data_3TYB # _model_server_result.job_id o77RIr7xXCiF8RmlAQrESQ _model_server_result.datetime_utc '2024-11-25 15:20:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3tyb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":701}' # _entry.id 3TYB # _exptl.entry_id 3TYB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 177.163 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-amino-6-methylidene-6,7-dihydropteridin-4(3H)-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3TYB _cell.length_a 98.676 _cell.length_b 98.676 _cell.length_c 264.297 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TYB _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,O 1 1,2 B,H,I,J,K,L,M,N,P 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_475 -x-1,-y+2,z -1 0 0 0 -1 0 0 0 1 -197.352 170.911845 0 3 'crystal symmetry operation' 4_465 -x-1,-y+1,z -1 0 0 0 -1 0 0 0 1 -148.014 85.455923 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 H N N # _chem_comp.formula 'C7 H7 N5 O' _chem_comp.formula_weight 177.163 _chem_comp.id XHP _chem_comp.mon_nstd_flag . _chem_comp.name 2-amino-6-methylidene-6,7-dihydropteridin-4(3H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C9 XHP sing 396 n n C2 N1 XHP doub 397 n n N2 C2 XHP sing 398 n n N2 HN2 XHP sing 399 n n N2 HN2A XHP sing 400 n n N3 C2 XHP sing 401 n n N3 C4 XHP sing 402 n n N3 HN3 XHP sing 403 n n C4 C10 XHP sing 404 n n O4 C4 XHP doub 405 n n N5 C6 XHP sing 406 n n C6 C7 XHP sing 407 n n C6 C6A XHP doub 408 n n C7 H7 XHP sing 409 n n C7 H5 XHP sing 410 n n N8 C7 XHP sing 411 n n C9 N8 XHP doub 412 n n C10 N5 XHP doub 413 n n C10 C9 XHP sing 414 n n C6A H6A XHP sing 415 n n C6A H6AA XHP sing 416 n n # _atom_sites.entry_id 3TYB _atom_sites.fract_transf_matrix[1][1] 0.010134 _atom_sites.fract_transf_matrix[1][2] 0.005851 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011702 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003784 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 XHP A 1 701 701 XHP XHP . D 3 PHB A 1 901 901 PHB PHB . E 4 SO4 A 1 278 1 SO4 SO4 . F 4 SO4 A 1 279 4 SO4 SO4 . G 4 SO4 A 1 280 8 SO4 SO4 . H 2 XHP B 1 702 702 XHP XHP . I 3 PHB B 1 902 902 PHB PHB . J 4 SO4 B 1 278 2 SO4 SO4 . K 4 SO4 B 1 279 3 SO4 SO4 . L 4 SO4 B 1 280 5 SO4 SO4 . M 4 SO4 B 1 281 6 SO4 SO4 . N 4 SO4 B 1 282 7 SO4 SO4 . O 5 HOH A 1 281 1 HOH HOH . O 5 HOH A 2 282 2 HOH HOH . O 5 HOH A 3 283 3 HOH HOH . O 5 HOH A 4 284 6 HOH HOH . O 5 HOH A 5 285 7 HOH HOH . O 5 HOH A 6 286 10 HOH HOH . O 5 HOH A 7 287 11 HOH HOH . O 5 HOH A 8 288 14 HOH HOH . O 5 HOH A 9 289 15 HOH HOH . O 5 HOH A 10 290 17 HOH HOH . O 5 HOH A 11 291 18 HOH HOH . O 5 HOH A 12 292 19 HOH HOH . P 5 HOH B 1 283 4 HOH HOH . P 5 HOH B 2 284 5 HOH HOH . P 5 HOH B 3 285 8 HOH HOH . P 5 HOH B 4 286 9 HOH HOH . P 5 HOH B 5 287 12 HOH HOH . P 5 HOH B 6 288 13 HOH HOH . P 5 HOH B 7 289 16 HOH HOH . P 5 HOH B 8 290 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 XHP . . . C 2 -77.778 84.207 92.501 1 88.86 ? N1 XHP 701 A 1 HETATM 2 C C2 XHP . . . C 2 -78.533 83.977 91.499 1 89.82 ? C2 XHP 701 A 1 HETATM 3 N N2 XHP . . . C 2 -78.258 82.974 90.715 1 89.28 ? N2 XHP 701 A 1 HETATM 4 N N3 XHP . . . C 2 -79.624 84.745 91.216 1 90.49 ? N3 XHP 701 A 1 HETATM 5 C C4 XHP . . . C 2 -79.988 85.802 91.974 1 89.07 ? C4 XHP 701 A 1 HETATM 6 O O4 XHP . . . C 2 -80.976 86.469 91.701 1 88.6 ? O4 XHP 701 A 1 HETATM 7 N N5 XHP . . . C 2 -79.464 87.109 93.934 1 89.83 ? N5 XHP 701 A 1 HETATM 8 C C6 XHP . . . C 2 -78.624 87.428 95.064 1 89.47 ? C6 XHP 701 A 1 HETATM 9 C C7 XHP . . . C 2 -77.378 86.606 95.29 1 88.08 ? C7 XHP 701 A 1 HETATM 10 N N8 XHP . . . C 2 -77.175 85.482 94.38 1 88.56 ? N8 XHP 701 A 1 HETATM 11 C C9 XHP . . . C 2 -77.997 85.306 93.415 1 89.48 ? C9 XHP 701 A 1 HETATM 12 C C10 XHP . . . C 2 -79.173 86.145 93.153 1 89.47 ? C10 XHP 701 A 1 HETATM 13 C C6A XHP . . . C 2 -78.955 88.439 95.875 1 88.31 ? C6A XHP 701 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 13 #