data_3TYB # _model_server_result.job_id N7alCFYhTJiD7jvzdVaWbA _model_server_result.datetime_utc '2024-11-25 15:36:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3tyb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":902}' # _entry.id 3TYB # _exptl.entry_id 3TYB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 138.121 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'P-HYDROXYBENZOIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3TYB _cell.length_a 98.676 _cell.length_b 98.676 _cell.length_c 264.297 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TYB _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,O 1 1,2 B,H,I,J,K,L,M,N,P 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_475 -x-1,-y+2,z -1 0 0 0 -1 0 0 0 1 -197.352 170.911845 0 3 'crystal symmetry operation' 4_465 -x-1,-y+1,z -1 0 0 0 -1 0 0 0 1 -148.014 85.455923 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 I N N # _chem_comp.formula 'C7 H6 O3' _chem_comp.formula_weight 138.121 _chem_comp.id PHB _chem_comp.mon_nstd_flag . _chem_comp.name 'P-HYDROXYBENZOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1' O1' PHB doub 237 n n C1' O2' PHB sing 238 n n C1' C1 PHB sing 239 n n O2' HO2' PHB sing 240 n n C1 C2 PHB sing 241 n y C1 C6 PHB doub 242 n y C2 C3 PHB doub 243 n y C2 H2 PHB sing 244 n n C3 C4 PHB sing 245 n y C3 H3 PHB sing 246 n n C4 C5 PHB doub 247 n y C4 O4 PHB sing 248 n n C5 C6 PHB sing 249 n y C5 H5 PHB sing 250 n n C6 H6 PHB sing 251 n n O4 HO4 PHB sing 252 n n # _atom_sites.entry_id 3TYB _atom_sites.fract_transf_matrix[1][1] 0.010134 _atom_sites.fract_transf_matrix[1][2] 0.005851 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011702 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003784 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 XHP A 1 701 701 XHP XHP . D 3 PHB A 1 901 901 PHB PHB . E 4 SO4 A 1 278 1 SO4 SO4 . F 4 SO4 A 1 279 4 SO4 SO4 . G 4 SO4 A 1 280 8 SO4 SO4 . H 2 XHP B 1 702 702 XHP XHP . I 3 PHB B 1 902 902 PHB PHB . J 4 SO4 B 1 278 2 SO4 SO4 . K 4 SO4 B 1 279 3 SO4 SO4 . L 4 SO4 B 1 280 5 SO4 SO4 . M 4 SO4 B 1 281 6 SO4 SO4 . N 4 SO4 B 1 282 7 SO4 SO4 . O 5 HOH A 1 281 1 HOH HOH . O 5 HOH A 2 282 2 HOH HOH . O 5 HOH A 3 283 3 HOH HOH . O 5 HOH A 4 284 6 HOH HOH . O 5 HOH A 5 285 7 HOH HOH . O 5 HOH A 6 286 10 HOH HOH . O 5 HOH A 7 287 11 HOH HOH . O 5 HOH A 8 288 14 HOH HOH . O 5 HOH A 9 289 15 HOH HOH . O 5 HOH A 10 290 17 HOH HOH . O 5 HOH A 11 291 18 HOH HOH . O 5 HOH A 12 292 19 HOH HOH . P 5 HOH B 1 283 4 HOH HOH . P 5 HOH B 2 284 5 HOH HOH . P 5 HOH B 3 285 8 HOH HOH . P 5 HOH B 4 286 9 HOH HOH . P 5 HOH B 5 287 12 HOH HOH . P 5 HOH B 6 288 13 HOH HOH . P 5 HOH B 7 289 16 HOH HOH . P 5 HOH B 8 290 20 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1' PHB . . . I 3 -57.96 53.064 135.412 1 137.19 ? C1' PHB 902 B 1 HETATM 2 O O1' PHB . . . I 3 -57.797 52.428 136.482 1 137.59 ? O1' PHB 902 B 1 HETATM 3 O O2' PHB . . . I 3 -58.138 52.473 134.327 1 136.48 ? O2' PHB 902 B 1 HETATM 4 C C1 PHB . . . I 3 -57.936 54.568 135.411 1 137.41 ? C1 PHB 902 B 1 HETATM 5 C C2 PHB . . . I 3 -58.088 55.266 134.214 1 137.51 ? C2 PHB 902 B 1 HETATM 6 C C3 PHB . . . I 3 -58.058 56.659 134.199 1 138.26 ? C3 PHB 902 B 1 HETATM 7 C C4 PHB . . . I 3 -57.877 57.369 135.385 1 138.75 ? C4 PHB 902 B 1 HETATM 8 C C5 PHB . . . I 3 -57.726 56.671 136.585 1 138.51 ? C5 PHB 902 B 1 HETATM 9 C C6 PHB . . . I 3 -57.752 55.276 136.597 1 137.86 ? C6 PHB 902 B 1 HETATM 10 O O4 PHB . . . I 3 -57.849 58.739 135.373 1 139.29 ? O4 PHB 902 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 10 #