data_3TYC
#
_model_server_result.job_id            -j4_3s3IxhwMdCSLRdaY0g 
_model_server_result.datetime_utc      '2024-11-07 21:33:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3tyc 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":701}' 
#
_entry.id    3TYC 
#
_exptl.entry_id    3TYC 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              177.163 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-amino-6-methylidene-6,7-dihydropteridin-4(3H)-one 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            3TYC 
_cell.length_a            97.757 
_cell.length_b            97.757 
_cell.length_c            263.095 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3TYC 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        180 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 62 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,Q 1 1,2 
B,J,K,L,M,N,O,P,R 2 1,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_475 -x-1,-y+2,z -1 0 0 0 -1 0 0 0 1 -195.514 169.320091 0 
3 'crystal symmetry operation' 4_465 -x-1,-y+1,z -1 0 0 0 -1 0 0 0 1 -146.6355 84.660045 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 J N N 
#
_chem_comp.formula           'C7 H7 N5 O' 
_chem_comp.formula_weight    177.163 
_chem_comp.id                XHP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-amino-6-methylidene-6,7-dihydropteridin-4(3H)-one 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C9 XHP sing 380 n n 
C2 N1 XHP doub 381 n n 
N2 C2 XHP sing 382 n n 
N2 HN2 XHP sing 383 n n 
N2 HN2A XHP sing 384 n n 
N3 C2 XHP sing 385 n n 
N3 C4 XHP sing 386 n n 
N3 HN3 XHP sing 387 n n 
C4 C10 XHP sing 388 n n 
O4 C4 XHP doub 389 n n 
N5 C6 XHP sing 390 n n 
C6 C7 XHP sing 391 n n 
C6 C6A XHP doub 392 n n 
C7 H7 XHP sing 393 n n 
C7 H5 XHP sing 394 n n 
N8 C7 XHP sing 395 n n 
C9 N8 XHP doub 396 n n 
C10 N5 XHP doub 397 n n 
C10 C9 XHP sing 398 n n 
C6A H6A XHP sing 399 n n 
C6A H6AA XHP sing 400 n n 
#
_atom_sites.entry_id                     3TYC 
_atom_sites.fract_transf_matrix[1][1]    0.010229 
_atom_sites.fract_transf_matrix[1][2]    0.005906 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011812 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003801 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 XHP A 1 701 701 XHP XHP . 
D 3 SO4 A 1 801 801 SO4 SO4 . 
E 3 SO4 A 1 803 803 SO4 SO4 . 
F 3 SO4 A 1 804 804 SO4 SO4 . 
G 3 SO4 A 1 810 810 SO4 SO4 . 
H 3 SO4 A 1 811 811 SO4 SO4 . 
I 3 SO4 A 1 812 812 SO4 SO4 . 
J 2 XHP B 1 702 702 XHP XHP . 
K 3 SO4 B 1 802 802 SO4 SO4 . 
L 3 SO4 B 1 805 805 SO4 SO4 . 
M 3 SO4 B 1 806 806 SO4 SO4 . 
N 3 SO4 B 1 807 807 SO4 SO4 . 
O 3 SO4 B 1 808 808 SO4 SO4 . 
P 3 SO4 B 1 809 809 SO4 SO4 . 
Q 4 HOH A 1 278 1 HOH HOH . 
Q 4 HOH A 2 279 2 HOH HOH . 
Q 4 HOH A 3 280 3 HOH HOH . 
Q 4 HOH A 4 281 4 HOH HOH . 
Q 4 HOH A 5 282 5 HOH HOH . 
Q 4 HOH A 6 283 6 HOH HOH . 
Q 4 HOH A 7 284 7 HOH HOH . 
Q 4 HOH A 8 285 8 HOH HOH . 
Q 4 HOH A 9 286 15 HOH HOH . 
Q 4 HOH A 10 287 16 HOH HOH . 
Q 4 HOH A 11 288 22 HOH HOH . 
Q 4 HOH A 12 289 23 HOH HOH . 
Q 4 HOH A 13 290 27 HOH HOH . 
Q 4 HOH A 14 291 28 HOH HOH . 
Q 4 HOH A 15 292 37 HOH HOH . 
Q 4 HOH A 16 293 38 HOH HOH . 
Q 4 HOH A 17 294 39 HOH HOH . 
Q 4 HOH A 18 295 40 HOH HOH . 
Q 4 HOH A 19 296 41 HOH HOH . 
Q 4 HOH A 20 297 42 HOH HOH . 
Q 4 HOH A 21 298 43 HOH HOH . 
Q 4 HOH A 22 299 44 HOH HOH . 
Q 4 HOH A 23 300 45 HOH HOH . 
Q 4 HOH A 24 301 46 HOH HOH . 
Q 4 HOH A 25 302 47 HOH HOH . 
Q 4 HOH A 26 303 48 HOH HOH . 
Q 4 HOH A 27 304 49 HOH HOH . 
Q 4 HOH A 28 305 50 HOH HOH . 
Q 4 HOH A 29 306 51 HOH HOH . 
Q 4 HOH A 30 307 52 HOH HOH . 
Q 4 HOH A 31 308 53 HOH HOH . 
Q 4 HOH A 32 309 54 HOH HOH . 
Q 4 HOH A 33 310 55 HOH HOH . 
Q 4 HOH A 34 311 56 HOH HOH . 
Q 4 HOH A 35 312 57 HOH HOH . 
Q 4 HOH A 36 313 63 HOH HOH . 
Q 4 HOH A 37 314 64 HOH HOH . 
R 4 HOH B 1 278 9 HOH HOH . 
R 4 HOH B 2 279 10 HOH HOH . 
R 4 HOH B 3 280 11 HOH HOH . 
R 4 HOH B 4 281 12 HOH HOH . 
R 4 HOH B 5 282 13 HOH HOH . 
R 4 HOH B 6 283 14 HOH HOH . 
R 4 HOH B 7 284 17 HOH HOH . 
R 4 HOH B 8 285 18 HOH HOH . 
R 4 HOH B 9 286 19 HOH HOH . 
R 4 HOH B 10 287 20 HOH HOH . 
R 4 HOH B 11 288 21 HOH HOH . 
R 4 HOH B 12 289 24 HOH HOH . 
R 4 HOH B 13 290 25 HOH HOH . 
R 4 HOH B 14 291 26 HOH HOH . 
R 4 HOH B 15 292 29 HOH HOH . 
R 4 HOH B 16 293 30 HOH HOH . 
R 4 HOH B 17 294 31 HOH HOH . 
R 4 HOH B 18 295 32 HOH HOH . 
R 4 HOH B 19 296 33 HOH HOH . 
R 4 HOH B 20 297 34 HOH HOH . 
R 4 HOH B 21 298 35 HOH HOH . 
R 4 HOH B 22 299 36 HOH HOH . 
R 4 HOH B 23 300 58 HOH HOH . 
R 4 HOH B 24 301 59 HOH HOH . 
R 4 HOH B 25 302 60 HOH HOH . 
R 4 HOH B 26 303 61 HOH HOH . 
R 4 HOH B 27 304 62 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 XHP . . . C 2 -76.854 83.272 91.749 1 57.27 ? N1 XHP 701 A 1 
HETATM 2 C C2 XHP . . . C 2 -77.67 83.154 90.76 1 60.74 ? C2 XHP 701 A 1 
HETATM 3 N N2 XHP . . . C 2 -77.501 82.125 89.956 1 59.26 ? N2 XHP 701 A 1 
HETATM 4 N N3 XHP . . . C 2 -78.736 84.023 90.55 1 60.05 ? N3 XHP 701 A 1 
HETATM 5 C C4 XHP . . . C 2 -78.98 85.102 91.35 1 58.92 ? C4 XHP 701 A 1 
HETATM 6 O O4 XHP . . . C 2 -79.949 85.87 91.126 1 57.47 ? O4 XHP 701 A 1 
HETATM 7 N N5 XHP . . . C 2 -78.275 86.248 93.332 1 59.35 ? N5 XHP 701 A 1 
HETATM 8 C C6 XHP . . . C 2 -77.374 86.49 94.447 1 59.75 ? C6 XHP 701 A 1 
HETATM 9 C C7 XHP . . . C 2 -76.193 85.551 94.64 1 57.12 ? C7 XHP 701 A 1 
HETATM 10 N N8 XHP . . . C 2 -76.092 84.443 93.667 1 56.95 ? N8 XHP 701 A 1 
HETATM 11 C C9 XHP . . . C 2 -76.966 84.34 92.707 1 60.71 ? C9 XHP 701 A 1 
HETATM 12 C C10 XHP . . . C 2 -78.085 85.301 92.51 1 58.17 ? C10 XHP 701 A 1 
HETATM 13 C C6A XHP . . . C 2 -77.632 87.565 95.289 1 60.35 ? C6A XHP 701 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           222 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           13 
#