data_3TYC # _model_server_result.job_id iKLLbPipeAHDOA83hekI4Q _model_server_result.datetime_utc '2024-11-07 22:05:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3tyc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":702}' # _entry.id 3TYC # _exptl.entry_id 3TYC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 177.163 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-amino-6-methylidene-6,7-dihydropteridin-4(3H)-one _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3TYC _cell.length_a 97.757 _cell.length_b 97.757 _cell.length_c 263.095 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TYC _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,Q 1 1,2 B,J,K,L,M,N,O,P,R 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_475 -x-1,-y+2,z -1 0 0 0 -1 0 0 0 1 -195.514 169.320091 0 3 'crystal symmetry operation' 4_465 -x-1,-y+1,z -1 0 0 0 -1 0 0 0 1 -146.6355 84.660045 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 J N N # _chem_comp.formula 'C7 H7 N5 O' _chem_comp.formula_weight 177.163 _chem_comp.id XHP _chem_comp.mon_nstd_flag . _chem_comp.name 2-amino-6-methylidene-6,7-dihydropteridin-4(3H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C9 XHP sing 380 n n C2 N1 XHP doub 381 n n N2 C2 XHP sing 382 n n N2 HN2 XHP sing 383 n n N2 HN2A XHP sing 384 n n N3 C2 XHP sing 385 n n N3 C4 XHP sing 386 n n N3 HN3 XHP sing 387 n n C4 C10 XHP sing 388 n n O4 C4 XHP doub 389 n n N5 C6 XHP sing 390 n n C6 C7 XHP sing 391 n n C6 C6A XHP doub 392 n n C7 H7 XHP sing 393 n n C7 H5 XHP sing 394 n n N8 C7 XHP sing 395 n n C9 N8 XHP doub 396 n n C10 N5 XHP doub 397 n n C10 C9 XHP sing 398 n n C6A H6A XHP sing 399 n n C6A H6AA XHP sing 400 n n # _atom_sites.entry_id 3TYC _atom_sites.fract_transf_matrix[1][1] 0.010229 _atom_sites.fract_transf_matrix[1][2] 0.005906 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011812 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003801 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 XHP A 1 701 701 XHP XHP . D 3 SO4 A 1 801 801 SO4 SO4 . E 3 SO4 A 1 803 803 SO4 SO4 . F 3 SO4 A 1 804 804 SO4 SO4 . G 3 SO4 A 1 810 810 SO4 SO4 . H 3 SO4 A 1 811 811 SO4 SO4 . I 3 SO4 A 1 812 812 SO4 SO4 . J 2 XHP B 1 702 702 XHP XHP . K 3 SO4 B 1 802 802 SO4 SO4 . L 3 SO4 B 1 805 805 SO4 SO4 . M 3 SO4 B 1 806 806 SO4 SO4 . N 3 SO4 B 1 807 807 SO4 SO4 . O 3 SO4 B 1 808 808 SO4 SO4 . P 3 SO4 B 1 809 809 SO4 SO4 . Q 4 HOH A 1 278 1 HOH HOH . Q 4 HOH A 2 279 2 HOH HOH . Q 4 HOH A 3 280 3 HOH HOH . Q 4 HOH A 4 281 4 HOH HOH . Q 4 HOH A 5 282 5 HOH HOH . Q 4 HOH A 6 283 6 HOH HOH . Q 4 HOH A 7 284 7 HOH HOH . Q 4 HOH A 8 285 8 HOH HOH . Q 4 HOH A 9 286 15 HOH HOH . Q 4 HOH A 10 287 16 HOH HOH . Q 4 HOH A 11 288 22 HOH HOH . Q 4 HOH A 12 289 23 HOH HOH . Q 4 HOH A 13 290 27 HOH HOH . Q 4 HOH A 14 291 28 HOH HOH . Q 4 HOH A 15 292 37 HOH HOH . Q 4 HOH A 16 293 38 HOH HOH . Q 4 HOH A 17 294 39 HOH HOH . Q 4 HOH A 18 295 40 HOH HOH . Q 4 HOH A 19 296 41 HOH HOH . Q 4 HOH A 20 297 42 HOH HOH . Q 4 HOH A 21 298 43 HOH HOH . Q 4 HOH A 22 299 44 HOH HOH . Q 4 HOH A 23 300 45 HOH HOH . Q 4 HOH A 24 301 46 HOH HOH . Q 4 HOH A 25 302 47 HOH HOH . Q 4 HOH A 26 303 48 HOH HOH . Q 4 HOH A 27 304 49 HOH HOH . Q 4 HOH A 28 305 50 HOH HOH . Q 4 HOH A 29 306 51 HOH HOH . Q 4 HOH A 30 307 52 HOH HOH . Q 4 HOH A 31 308 53 HOH HOH . Q 4 HOH A 32 309 54 HOH HOH . Q 4 HOH A 33 310 55 HOH HOH . Q 4 HOH A 34 311 56 HOH HOH . Q 4 HOH A 35 312 57 HOH HOH . Q 4 HOH A 36 313 63 HOH HOH . Q 4 HOH A 37 314 64 HOH HOH . R 4 HOH B 1 278 9 HOH HOH . R 4 HOH B 2 279 10 HOH HOH . R 4 HOH B 3 280 11 HOH HOH . R 4 HOH B 4 281 12 HOH HOH . R 4 HOH B 5 282 13 HOH HOH . R 4 HOH B 6 283 14 HOH HOH . R 4 HOH B 7 284 17 HOH HOH . R 4 HOH B 8 285 18 HOH HOH . R 4 HOH B 9 286 19 HOH HOH . R 4 HOH B 10 287 20 HOH HOH . R 4 HOH B 11 288 21 HOH HOH . R 4 HOH B 12 289 24 HOH HOH . R 4 HOH B 13 290 25 HOH HOH . R 4 HOH B 14 291 26 HOH HOH . R 4 HOH B 15 292 29 HOH HOH . R 4 HOH B 16 293 30 HOH HOH . R 4 HOH B 17 294 31 HOH HOH . R 4 HOH B 18 295 32 HOH HOH . R 4 HOH B 19 296 33 HOH HOH . R 4 HOH B 20 297 34 HOH HOH . R 4 HOH B 21 298 35 HOH HOH . R 4 HOH B 22 299 36 HOH HOH . R 4 HOH B 23 300 58 HOH HOH . R 4 HOH B 24 301 59 HOH HOH . R 4 HOH B 25 302 60 HOH HOH . R 4 HOH B 26 303 61 HOH HOH . R 4 HOH B 27 304 62 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 XHP . . . J 2 -63.834 60.893 137.847 1 58.34 ? N1 XHP 702 B 1 HETATM 2 C C2 XHP . . . J 2 -64.373 60.286 138.853 1 58.6 ? C2 XHP 702 B 1 HETATM 3 N N2 XHP . . . J 2 -65.155 60.964 139.673 1 51.55 ? N2 XHP 702 B 1 HETATM 4 N N3 XHP . . . J 2 -64.152 58.945 139.081 1 56.74 ? N3 XHP 702 B 1 HETATM 5 C C4 XHP . . . J 2 -63.35 58.206 138.309 1 56.44 ? C4 XHP 702 B 1 HETATM 6 O O4 XHP . . . J 2 -63.201 56.999 138.562 1 58.29 ? O4 XHP 702 B 1 HETATM 7 N N5 XHP . . . J 2 -61.952 58.104 136.337 1 59.37 ? N5 XHP 702 B 1 HETATM 8 C C6 XHP . . . J 2 -61.302 58.724 135.181 1 61.14 ? C6 XHP 702 B 1 HETATM 9 C C7 XHP . . . J 2 -61.484 60.23 134.955 1 56.55 ? C7 XHP 702 B 1 HETATM 10 N N8 XHP . . . J 2 -62.388 60.861 135.931 1 59.37 ? N8 XHP 702 B 1 HETATM 11 C C9 XHP . . . J 2 -62.939 60.211 136.916 1 58.88 ? C9 XHP 702 B 1 HETATM 12 C C10 XHP . . . J 2 -62.71 58.796 137.133 1 57.57 ? C10 XHP 702 B 1 HETATM 13 C C6A XHP . . . J 2 -60.512 57.972 134.359 1 57.78 ? C6A XHP 702 B 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 337 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 13 #