data_3TYD # _model_server_result.job_id -Bp3FDOh45Sof-serouGsQ _model_server_result.datetime_utc '2024-11-07 21:30:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3tyd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":283}' # _entry.id 3TYD # _exptl.entry_id 3TYD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3TYD _cell.length_a 99.44 _cell.length_b 99.44 _cell.length_c 262.13 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TYD _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,S 1 1,2 B,K,L,M,N,O,P,Q,R,T 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_475 -x-1,-y+2,z -1 0 0 0 -1 0 0 0 1 -198.88 172.235132 0 3 'crystal symmetry operation' 4_465 -x-1,-y+1,z -1 0 0 0 -1 0 0 0 1 -149.16 86.117566 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 M N N ? 4 N N N ? 4 O N N ? 4 P N N ? 4 Q N N ? 4 R N N # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 300 n n S O2 SO4 doub 301 n n S O3 SO4 sing 302 n n S O4 SO4 sing 303 n n # _atom_sites.entry_id 3TYD _atom_sites.fract_transf_matrix[1][1] 0.010056 _atom_sites.fract_transf_matrix[1][2] 0.005806 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011612 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003815 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 POP A 1 701 701 POP POP . D 3 XHP A 1 801 801 XHP XHP . E 4 SO4 A 1 278 1 SO4 SO4 . F 4 SO4 A 1 279 2 SO4 SO4 . G 4 SO4 A 1 280 3 SO4 SO4 . H 4 SO4 A 1 281 4 SO4 SO4 . I 4 SO4 A 1 282 5 SO4 SO4 . J 4 SO4 A 1 283 12 SO4 SO4 . K 2 POP B 1 702 702 POP POP . L 3 XHP B 1 802 802 XHP XHP . M 4 SO4 B 1 278 6 SO4 SO4 . N 4 SO4 B 1 279 7 SO4 SO4 . O 4 SO4 B 1 280 8 SO4 SO4 . P 4 SO4 B 1 281 9 SO4 SO4 . Q 4 SO4 B 1 282 10 SO4 SO4 . R 4 SO4 B 1 283 11 SO4 SO4 . S 5 HOH A 1 284 1 HOH HOH . S 5 HOH A 2 285 4 HOH HOH . S 5 HOH A 3 286 9 HOH HOH . S 5 HOH A 4 287 10 HOH HOH . S 5 HOH A 5 288 11 HOH HOH . S 5 HOH A 6 289 12 HOH HOH . S 5 HOH A 7 290 13 HOH HOH . S 5 HOH A 8 291 14 HOH HOH . S 5 HOH A 9 292 15 HOH HOH . S 5 HOH A 10 293 16 HOH HOH . S 5 HOH A 11 294 17 HOH HOH . S 5 HOH A 12 295 19 HOH HOH . S 5 HOH A 13 296 20 HOH HOH . S 5 HOH A 14 297 26 HOH HOH . S 5 HOH A 15 298 28 HOH HOH . T 5 HOH B 1 284 2 HOH HOH . T 5 HOH B 2 285 3 HOH HOH . T 5 HOH B 3 286 5 HOH HOH . T 5 HOH B 4 287 6 HOH HOH . T 5 HOH B 5 288 7 HOH HOH . T 5 HOH B 6 289 8 HOH HOH . T 5 HOH B 7 290 18 HOH HOH . T 5 HOH B 8 291 21 HOH HOH . T 5 HOH B 9 292 22 HOH HOH . T 5 HOH B 10 293 23 HOH HOH . T 5 HOH B 11 294 24 HOH HOH . T 5 HOH B 12 295 25 HOH HOH . T 5 HOH B 13 296 27 HOH HOH . T 5 HOH B 14 297 29 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . J 4 -57.483 69.681 91.371 1 153.56 ? S SO4 283 A 1 HETATM 2 O O1 SO4 . . . J 4 -56.118 69.156 91.452 1 153.57 ? O1 SO4 283 A 1 HETATM 3 O O2 SO4 . . . J 4 -57.913 69.677 89.975 1 153.75 ? O2 SO4 283 A 1 HETATM 4 O O3 SO4 . . . J 4 -58.393 68.821 92.123 1 153.45 ? O3 SO4 283 A 1 HETATM 5 O O4 SO4 . . . J 4 -57.524 71.037 91.918 1 152.93 ? O4 SO4 283 A 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 235 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 5 #