data_3TYD # _model_server_result.job_id FY6xyTxTR6ZGi5qMkH7W6A _model_server_result.datetime_utc '2024-11-23 10:46:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3tyd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":701}' # _entry.id 3TYD # _exptl.entry_id 3TYD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 175.959 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PYROPHOSPHATE 2-' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3TYD _cell.length_a 99.44 _cell.length_b 99.44 _cell.length_c 262.13 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TYD _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,H,I,J,S 1 1,2 B,K,L,M,N,O,P,Q,R,T 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_475 -x-1,-y+2,z -1 0 0 0 -1 0 0 0 1 -198.88 172.235132 0 3 'crystal symmetry operation' 4_465 -x-1,-y+1,z -1 0 0 0 -1 0 0 0 1 -149.16 86.117566 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 K N N # _chem_comp.formula 'H2 O7 P2 -2' _chem_comp.formula_weight 175.959 _chem_comp.id POP _chem_comp.mon_nstd_flag . _chem_comp.name 'PYROPHOSPHATE 2-' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P1 O1 POP doub 260 n n P1 O2 POP sing 261 n n P1 O3 POP sing 262 n n P1 O POP sing 263 n n O2 HO2 POP sing 264 n n O P2 POP sing 265 n n P2 O4 POP doub 266 n n P2 O5 POP sing 267 n n P2 O6 POP sing 268 n n O5 HO5 POP sing 269 n n # _atom_sites.entry_id 3TYD _atom_sites.fract_transf_matrix[1][1] 0.010056 _atom_sites.fract_transf_matrix[1][2] 0.005806 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011612 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003815 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 POP A 1 701 701 POP POP . D 3 XHP A 1 801 801 XHP XHP . E 4 SO4 A 1 278 1 SO4 SO4 . F 4 SO4 A 1 279 2 SO4 SO4 . G 4 SO4 A 1 280 3 SO4 SO4 . H 4 SO4 A 1 281 4 SO4 SO4 . I 4 SO4 A 1 282 5 SO4 SO4 . J 4 SO4 A 1 283 12 SO4 SO4 . K 2 POP B 1 702 702 POP POP . L 3 XHP B 1 802 802 XHP XHP . M 4 SO4 B 1 278 6 SO4 SO4 . N 4 SO4 B 1 279 7 SO4 SO4 . O 4 SO4 B 1 280 8 SO4 SO4 . P 4 SO4 B 1 281 9 SO4 SO4 . Q 4 SO4 B 1 282 10 SO4 SO4 . R 4 SO4 B 1 283 11 SO4 SO4 . S 5 HOH A 1 284 1 HOH HOH . S 5 HOH A 2 285 4 HOH HOH . S 5 HOH A 3 286 9 HOH HOH . S 5 HOH A 4 287 10 HOH HOH . S 5 HOH A 5 288 11 HOH HOH . S 5 HOH A 6 289 12 HOH HOH . S 5 HOH A 7 290 13 HOH HOH . S 5 HOH A 8 291 14 HOH HOH . S 5 HOH A 9 292 15 HOH HOH . S 5 HOH A 10 293 16 HOH HOH . S 5 HOH A 11 294 17 HOH HOH . S 5 HOH A 12 295 19 HOH HOH . S 5 HOH A 13 296 20 HOH HOH . S 5 HOH A 14 297 26 HOH HOH . S 5 HOH A 15 298 28 HOH HOH . T 5 HOH B 1 284 2 HOH HOH . T 5 HOH B 2 285 3 HOH HOH . T 5 HOH B 3 286 5 HOH HOH . T 5 HOH B 4 287 6 HOH HOH . T 5 HOH B 5 288 7 HOH HOH . T 5 HOH B 6 289 8 HOH HOH . T 5 HOH B 7 290 18 HOH HOH . T 5 HOH B 8 291 21 HOH HOH . T 5 HOH B 9 292 22 HOH HOH . T 5 HOH B 10 293 23 HOH HOH . T 5 HOH B 11 294 24 HOH HOH . T 5 HOH B 12 295 25 HOH HOH . T 5 HOH B 13 296 27 HOH HOH . T 5 HOH B 14 297 29 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 POP . . . C 2 -79.199 90.317 98.945 1 106.81 ? P1 POP 701 A 1 HETATM 2 O O1 POP . . . C 2 -78.618 91.287 99.965 1 105.96 ? O1 POP 701 A 1 HETATM 3 O O2 POP . . . C 2 -80.157 91.026 97.988 1 105.43 ? O2 POP 701 A 1 HETATM 4 O O3 POP . . . C 2 -78.031 89.674 98.203 1 106.01 ? O3 POP 701 A 1 HETATM 5 O O POP . . . C 2 -80.049 89.192 99.754 1 104.66 ? O POP 701 A 1 HETATM 6 P P2 POP . . . C 2 -80.556 87.831 99.065 1 102.52 ? P2 POP 701 A 1 HETATM 7 O O4 POP . . . C 2 -79.354 87.02 98.644 1 101.85 ? O4 POP 701 A 1 HETATM 8 O O5 POP . . . C 2 -81.509 88.16 97.94 1 103.06 ? O5 POP 701 A 1 HETATM 9 O O6 POP . . . C 2 -81.308 87.094 100.131 1 104.01 ? O6 POP 701 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 9 #