data_3TYE # _model_server_result.job_id 9lPhXY3jiXXPm3WBHB9F3g _model_server_result.datetime_utc '2024-11-07 20:44:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3tye # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":901}' # _entry.id 3TYE # _exptl.entry_id 3TYE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 177.163 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-amino-6-methylidene-6,7-dihydropteridin-4(3H)-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3TYE _cell.length_a 97.329 _cell.length_b 97.329 _cell.length_c 263.829 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TYE _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 62 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,F,G,O 1 1,2 B,H,I,J,K,L,M,N,P 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_475 -x-1,-y+2,z -1 0 0 0 -1 0 0 0 1 -194.658 168.578773 0 3 'crystal symmetry operation' 4_465 -x-1,-y+1,z -1 0 0 0 -1 0 0 0 1 -145.9935 84.289387 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C7 H7 N5 O' _chem_comp.formula_weight 177.163 _chem_comp.id XHP _chem_comp.mon_nstd_flag . _chem_comp.name 2-amino-6-methylidene-6,7-dihydropteridin-4(3H)-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C9 XHP sing 380 n n C2 N1 XHP doub 381 n n N2 C2 XHP sing 382 n n N2 HN2 XHP sing 383 n n N2 HN2A XHP sing 384 n n N3 C2 XHP sing 385 n n N3 C4 XHP sing 386 n n N3 HN3 XHP sing 387 n n C4 C10 XHP sing 388 n n O4 C4 XHP doub 389 n n N5 C6 XHP sing 390 n n C6 C7 XHP sing 391 n n C6 C6A XHP doub 392 n n C7 H7 XHP sing 393 n n C7 H5 XHP sing 394 n n N8 C7 XHP sing 395 n n C9 N8 XHP doub 396 n n C10 N5 XHP doub 397 n n C10 C9 XHP sing 398 n n C6A H6A XHP sing 399 n n C6A H6AA XHP sing 400 n n # _atom_sites.entry_id 3TYE _atom_sites.fract_transf_matrix[1][1] 0.010274 _atom_sites.fract_transf_matrix[1][2] 0.005932 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011864 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00379 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 XTZ A 1 801 801 XTZ XTZ . D 3 SO4 A 1 278 1 SO4 SO4 . E 3 SO4 A 1 279 2 SO4 SO4 . F 3 SO4 A 1 280 3 SO4 SO4 . G 3 SO4 A 1 281 4 SO4 SO4 . H 4 XHP B 1 901 901 XHP XHP . I 5 YTZ B 1 902 902 YTZ YTZ . J 3 SO4 B 1 278 5 SO4 SO4 . K 3 SO4 B 1 279 6 SO4 SO4 . L 3 SO4 B 1 280 7 SO4 SO4 . M 3 SO4 B 1 281 8 SO4 SO4 . N 3 SO4 B 1 282 9 SO4 SO4 . O 6 HOH A 1 282 1 HOH HOH . O 6 HOH A 2 283 2 HOH HOH . O 6 HOH A 3 284 3 HOH HOH . O 6 HOH A 4 285 4 HOH HOH . O 6 HOH A 5 286 5 HOH HOH . O 6 HOH A 6 287 6 HOH HOH . O 6 HOH A 7 288 7 HOH HOH . O 6 HOH A 8 289 8 HOH HOH . O 6 HOH A 9 290 9 HOH HOH . O 6 HOH A 10 291 17 HOH HOH . O 6 HOH A 11 292 18 HOH HOH . O 6 HOH A 12 293 19 HOH HOH . O 6 HOH A 13 294 21 HOH HOH . O 6 HOH A 14 295 24 HOH HOH . O 6 HOH A 15 296 25 HOH HOH . O 6 HOH A 16 297 26 HOH HOH . O 6 HOH A 17 298 27 HOH HOH . O 6 HOH A 18 299 31 HOH HOH . O 6 HOH A 19 300 34 HOH HOH . O 6 HOH A 20 301 35 HOH HOH . O 6 HOH A 21 302 36 HOH HOH . O 6 HOH A 22 303 39 HOH HOH . O 6 HOH A 23 304 43 HOH HOH . O 6 HOH A 24 305 48 HOH HOH . O 6 HOH A 25 306 51 HOH HOH . O 6 HOH A 26 307 52 HOH HOH . O 6 HOH A 27 308 53 HOH HOH . O 6 HOH A 28 309 54 HOH HOH . O 6 HOH A 29 310 55 HOH HOH . O 6 HOH A 30 311 56 HOH HOH . O 6 HOH A 31 312 57 HOH HOH . O 6 HOH A 32 313 58 HOH HOH . O 6 HOH A 33 314 59 HOH HOH . O 6 HOH A 34 315 60 HOH HOH . O 6 HOH A 35 316 61 HOH HOH . O 6 HOH A 36 317 62 HOH HOH . O 6 HOH A 37 318 63 HOH HOH . O 6 HOH A 38 319 68 HOH HOH . O 6 HOH A 39 320 69 HOH HOH . O 6 HOH A 40 321 71 HOH HOH . O 6 HOH A 41 322 72 HOH HOH . O 6 HOH A 42 323 73 HOH HOH . P 6 HOH B 1 283 10 HOH HOH . P 6 HOH B 2 284 11 HOH HOH . P 6 HOH B 3 285 12 HOH HOH . P 6 HOH B 4 286 13 HOH HOH . P 6 HOH B 5 287 14 HOH HOH . P 6 HOH B 6 288 15 HOH HOH . P 6 HOH B 7 289 16 HOH HOH . P 6 HOH B 8 290 20 HOH HOH . P 6 HOH B 9 291 22 HOH HOH . P 6 HOH B 10 292 23 HOH HOH . P 6 HOH B 11 293 28 HOH HOH . P 6 HOH B 12 294 29 HOH HOH . P 6 HOH B 13 295 30 HOH HOH . P 6 HOH B 14 296 32 HOH HOH . P 6 HOH B 15 297 33 HOH HOH . P 6 HOH B 16 298 37 HOH HOH . P 6 HOH B 17 299 38 HOH HOH . P 6 HOH B 18 300 40 HOH HOH . P 6 HOH B 19 301 41 HOH HOH . P 6 HOH B 20 302 42 HOH HOH . P 6 HOH B 21 303 44 HOH HOH . P 6 HOH B 22 304 45 HOH HOH . P 6 HOH B 23 305 46 HOH HOH . P 6 HOH B 24 306 47 HOH HOH . P 6 HOH B 25 307 49 HOH HOH . P 6 HOH B 26 308 50 HOH HOH . P 6 HOH B 27 309 64 HOH HOH . P 6 HOH B 28 310 65 HOH HOH . P 6 HOH B 29 311 66 HOH HOH . P 6 HOH B 30 312 67 HOH HOH . P 6 HOH B 31 313 70 HOH HOH . P 6 HOH B 32 314 74 HOH HOH . P 6 HOH B 33 315 75 HOH HOH . P 6 HOH B 34 316 76 HOH HOH . P 6 HOH B 35 317 77 HOH HOH . P 6 HOH B 36 318 78 HOH HOH . P 6 HOH B 37 319 79 HOH HOH . P 6 HOH B 38 320 80 HOH HOH . P 6 HOH B 39 321 81 HOH HOH . P 6 HOH B 40 322 82 HOH HOH . P 6 HOH B 41 323 83 HOH HOH . P 6 HOH B 42 324 84 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 XHP . . . H 4 -63.037 60.719 138.889 1 90.73 ? N1 XHP 901 B 1 HETATM 2 C C2 XHP . . . H 4 -63.705 60.167 139.831 1 89.65 ? C2 XHP 901 B 1 HETATM 3 N N2 XHP . . . H 4 -64.433 60.917 140.604 1 88.43 ? N2 XHP 901 B 1 HETATM 4 N N3 XHP . . . H 4 -63.685 58.819 140.043 1 89.48 ? N3 XHP 901 B 1 HETATM 5 C C4 XHP . . . H 4 -62.958 57.961 139.29 1 89.43 ? C4 XHP 901 B 1 HETATM 6 O O4 XHP . . . H 4 -62.952 56.753 139.503 1 89.01 ? O4 XHP 901 B 1 HETATM 7 N N5 XHP . . . H 4 -61.47 57.746 137.457 1 90.94 ? N5 XHP 901 B 1 HETATM 8 C C6 XHP . . . H 4 -60.687 58.306 136.386 1 91.35 ? C6 XHP 901 B 1 HETATM 9 C C7 XHP . . . H 4 -60.678 59.8 136.125 1 90.38 ? C7 XHP 901 B 1 HETATM 10 N N8 XHP . . . H 4 -61.538 60.534 137.055 1 89.91 ? N8 XHP 901 B 1 HETATM 11 C C9 XHP . . . H 4 -62.205 59.952 137.985 1 90.41 ? C9 XHP 901 B 1 HETATM 12 C C10 XHP . . . H 4 -62.163 58.504 138.193 1 90.1 ? C10 XHP 901 B 1 HETATM 13 C C6A XHP . . . H 4 -59.969 57.476 135.625 1 91.31 ? C6A XHP 901 B 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 329 _model_server_stats.encode_time_ms 19 _model_server_stats.element_count 13 #