data_3TYF
#
_model_server_result.job_id            hCDS32uZ7i0p1qbngV1_ig 
_model_server_result.datetime_utc      '2025-01-10 12:17:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3tyf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":301}' 
#
_entry.id    3TYF 
#
_exptl.entry_id    3TYF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    9 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         103.89 
_cell.angle_beta          106.32 
_cell.angle_gamma         100.84 
_cell.entry_id            3TYF 
_cell.length_a            64.602 
_cell.length_b            65.755 
_cell.length_c            66.993 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3TYF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,E,F,G,H,I,N,O 1 1 
C,D,J,K,L,M,P,Q 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
? 3 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 25 A CYS 22 1_555 A SG CYS 92 A CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf2 A SG CYS 139 A CYS 136 1_555 A SG CYS 189 A CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf3 A SG CYS 164 A CYS 161 1_555 B SG CYS 176 B CYS 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf4 B SG CYS 25 B CYS 23 1_555 B SG CYS 93 B CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf5 B SG CYS 150 B CYS 148 1_555 B SG CYS 215 B CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf6 C SG CYS 25 C CYS 22 1_555 C SG CYS 92 C CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf7 C SG CYS 139 C CYS 136 1_555 C SG CYS 189 C CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
disulf ? disulf8 C SG CYS 164 C CYS 161 1_555 D SG CYS 176 D CYS 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf9 D SG CYS 25 D CYS 23 1_555 D SG CYS 93 D CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf10 D SG CYS 150 D CYS 148 1_555 D SG CYS 215 D CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     3TYF 
_atom_sites.fract_transf_matrix[1][1]    0.015479 
_atom_sites.fract_transf_matrix[1][2]    0.002964 
_atom_sites.fract_transf_matrix[1][3]    0.005737 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015484 
_atom_sites.fract_transf_matrix[2][3]    0.005062 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016364 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 GOL A 1 301 1000 GOL GOL . 
F 3 GOL A 1 302 1002 GOL GOL . 
G 3 GOL A 1 303 1003 GOL GOL . 
H 3 GOL B 1 301 1000 GOL GOL . 
I 3 GOL B 1 302 1002 GOL GOL . 
J 3 GOL C 1 301 1000 GOL GOL . 
K 3 GOL C 1 302 1001 GOL GOL . 
L 3 GOL C 1 303 1003 GOL GOL . 
M 3 GOL D 1 1000 1000 GOL GOL . 
N 4 HOH A 1 401 4 HOH HOH . 
N 4 HOH A 2 402 8 HOH HOH . 
N 4 HOH A 3 403 12 HOH HOH . 
N 4 HOH A 4 404 13 HOH HOH . 
N 4 HOH A 5 405 14 HOH HOH . 
N 4 HOH A 6 406 19 HOH HOH . 
N 4 HOH A 7 407 28 HOH HOH . 
O 4 HOH B 1 401 15 HOH HOH . 
O 4 HOH B 2 402 17 HOH HOH . 
O 4 HOH B 3 403 20 HOH HOH . 
O 4 HOH B 4 404 23 HOH HOH . 
O 4 HOH B 5 405 24 HOH HOH . 
O 4 HOH B 6 406 25 HOH HOH . 
O 4 HOH B 7 407 30 HOH HOH . 
O 4 HOH B 8 408 32 HOH HOH . 
O 4 HOH B 9 409 33 HOH HOH . 
O 4 HOH B 10 410 36 HOH HOH . 
P 4 HOH C 1 401 2 HOH HOH . 
P 4 HOH C 2 402 3 HOH HOH . 
P 4 HOH C 3 403 6 HOH HOH . 
P 4 HOH C 4 404 7 HOH HOH . 
P 4 HOH C 5 405 18 HOH HOH . 
P 4 HOH C 6 406 21 HOH HOH . 
P 4 HOH C 7 407 22 HOH HOH . 
P 4 HOH C 8 408 35 HOH HOH . 
Q 4 HOH D 1 1101 1 HOH HOH . 
Q 4 HOH D 2 1102 5 HOH HOH . 
Q 4 HOH D 3 1103 9 HOH HOH . 
Q 4 HOH D 4 1104 10 HOH HOH . 
Q 4 HOH D 5 1105 11 HOH HOH . 
Q 4 HOH D 6 1106 16 HOH HOH . 
Q 4 HOH D 7 1107 26 HOH HOH . 
Q 4 HOH D 8 1108 27 HOH HOH . 
Q 4 HOH D 9 1109 29 HOH HOH . 
Q 4 HOH D 10 1110 31 HOH HOH . 
Q 4 HOH D 11 1111 34 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . H 3 3.625 -35.922 11.039 1 77.85 ? C1 GOL 301 B 1 
HETATM 2 O O1 GOL . . . H 3 4.889 -35.428 11.428 1 74.5 ? O1 GOL 301 B 1 
HETATM 3 C C2 GOL . . . H 3 3.792 -37.314 10.445 1 79.58 ? C2 GOL 301 B 1 
HETATM 4 O O2 GOL . . . H 3 3.953 -37.238 9.048 1 82.27 ? O2 GOL 301 B 1 
HETATM 5 C C3 GOL . . . H 3 2.577 -38.17 10.766 1 78.68 ? C3 GOL 301 B 1 
HETATM 6 O O3 GOL . . . H 3 2.641 -39.334 9.977 1 78.33 ? O3 GOL 301 B 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    24 
_model_server_stats.query_time_ms           302 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#