data_3TZ4
#
_model_server_result.job_id            NozzeS_naKHKAGAI1rT8ow 
_model_server_result.datetime_utc      '2024-11-14 21:51:36' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3tz4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":389}' 
#
_entry.id    3TZ4 
#
_exptl.entry_id    3TZ4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3TZ4 
_cell.length_a            127.953 
_cell.length_b            127.953 
_cell.length_c            73.399 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3TZ4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        94 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 42 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? dimeric 2 author_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F 1 1,2 
A,B,C,D,E,F 2 1,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 8_555 -y,-x,-z 0 -1 0 -1 0 0 0 0 -1 0 0 0 
3 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASN 279 A ASN 249 1_555 D MG MG . A MG 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.259 ? 
metalc ? metalc2 A O VAL 328 A VAL 298 1_555 E K K . A K 392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.905 ? 
metalc ? metalc3 A O ASP 330 A ASP 300 1_555 E K K . A K 392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.873 ? 
metalc ? metalc4 A O PHE 333 A PHE 303 1_555 E K K . A K 392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.923 ? 
metalc ? metalc5 A O GLY 367 A GLY 337 1_555 E K K . A K 392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.991 ? 
metalc ? metalc6 B O1A ADP . A ADP 389 1_555 D MG MG . A MG 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? 
metalc ? metalc7 B O1B ADP . A ADP 389 1_555 D MG MG . A MG 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? 
metalc ? metalc8 B O2A ADP . A ADP 389 1_555 E K K . A K 392 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.881 ? 
metalc ? metalc9 D MG MG . A MG 391 1_555 F O HOH . A HOH 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? 
metalc ? metalc10 D MG MG . A MG 391 1_555 F O HOH . A HOH 431 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? 
metalc ? metalc11 D MG MG . A MG 391 1_555 F O HOH . A HOH 443 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.23 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 20 n n 
PB O2B ADP sing 21 n n 
PB O3B ADP sing 22 n n 
PB O3A ADP sing 23 n n 
O2B HOB2 ADP sing 24 n n 
O3B HOB3 ADP sing 25 n n 
PA O1A ADP doub 26 n n 
PA O2A ADP sing 27 n n 
PA O3A ADP sing 28 n n 
PA O5' ADP sing 29 n n 
O2A HOA2 ADP sing 30 n n 
O5' C5' ADP sing 31 n n 
C5' C4' ADP sing 32 n n 
C5' "H5'1" ADP sing 33 n n 
C5' "H5'2" ADP sing 34 n n 
C4' O4' ADP sing 35 n n 
C4' C3' ADP sing 36 n n 
C4' H4' ADP sing 37 n n 
O4' C1' ADP sing 38 n n 
C3' O3' ADP sing 39 n n 
C3' C2' ADP sing 40 n n 
C3' H3' ADP sing 41 n n 
O3' HO3' ADP sing 42 n n 
C2' O2' ADP sing 43 n n 
C2' C1' ADP sing 44 n n 
C2' H2' ADP sing 45 n n 
O2' HO2' ADP sing 46 n n 
C1' N9 ADP sing 47 n n 
C1' H1' ADP sing 48 n n 
N9 C8 ADP sing 49 n y 
N9 C4 ADP sing 50 n y 
C8 N7 ADP doub 51 n y 
C8 H8 ADP sing 52 n n 
N7 C5 ADP sing 53 n y 
C5 C6 ADP sing 54 n y 
C5 C4 ADP doub 55 n y 
C6 N6 ADP sing 56 n n 
C6 N1 ADP doub 57 n y 
N6 HN61 ADP sing 58 n n 
N6 HN62 ADP sing 59 n n 
N1 C2 ADP sing 60 n y 
C2 N3 ADP doub 61 n y 
C2 H2 ADP sing 62 n n 
N3 C4 ADP sing 63 n y 
#
_atom_sites.entry_id                     3TZ4 
_atom_sites.fract_transf_matrix[1][1]    0.007815 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007815 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013624 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ADP A 1 389 1 ADP ADP . 
C 3 03H A 1 390 1 03H 03H . 
D 4 MG A 1 391 1 MG MG . 
E 5 K A 1 392 1 K K . 
F 6 HOH A 1 393 1 HOH HOH . 
F 6 HOH A 2 394 2 HOH HOH . 
F 6 HOH A 3 395 3 HOH HOH . 
F 6 HOH A 4 396 4 HOH HOH . 
F 6 HOH A 5 397 5 HOH HOH . 
F 6 HOH A 6 398 6 HOH HOH . 
F 6 HOH A 7 399 7 HOH HOH . 
F 6 HOH A 8 400 8 HOH HOH . 
F 6 HOH A 9 401 9 HOH HOH . 
F 6 HOH A 10 402 10 HOH HOH . 
F 6 HOH A 11 403 11 HOH HOH . 
F 6 HOH A 12 404 12 HOH HOH . 
F 6 HOH A 13 405 13 HOH HOH . 
F 6 HOH A 14 406 14 HOH HOH . 
F 6 HOH A 15 407 15 HOH HOH . 
F 6 HOH A 16 408 16 HOH HOH . 
F 6 HOH A 17 409 17 HOH HOH . 
F 6 HOH A 18 410 18 HOH HOH . 
F 6 HOH A 19 411 19 HOH HOH . 
F 6 HOH A 20 412 20 HOH HOH . 
F 6 HOH A 21 413 21 HOH HOH . 
F 6 HOH A 22 414 22 HOH HOH . 
F 6 HOH A 23 415 23 HOH HOH . 
F 6 HOH A 24 416 24 HOH HOH . 
F 6 HOH A 25 417 25 HOH HOH . 
F 6 HOH A 26 418 26 HOH HOH . 
F 6 HOH A 27 419 27 HOH HOH . 
F 6 HOH A 28 420 28 HOH HOH . 
F 6 HOH A 29 421 29 HOH HOH . 
F 6 HOH A 30 422 30 HOH HOH . 
F 6 HOH A 31 423 31 HOH HOH . 
F 6 HOH A 32 424 32 HOH HOH . 
F 6 HOH A 33 425 33 HOH HOH . 
F 6 HOH A 34 426 34 HOH HOH . 
F 6 HOH A 35 427 35 HOH HOH . 
F 6 HOH A 36 428 36 HOH HOH . 
F 6 HOH A 37 429 37 HOH HOH . 
F 6 HOH A 38 430 38 HOH HOH . 
F 6 HOH A 39 431 39 HOH HOH . 
F 6 HOH A 40 432 40 HOH HOH . 
F 6 HOH A 41 433 41 HOH HOH . 
F 6 HOH A 42 434 42 HOH HOH . 
F 6 HOH A 43 435 43 HOH HOH . 
F 6 HOH A 44 436 44 HOH HOH . 
F 6 HOH A 45 437 46 HOH HOH . 
F 6 HOH A 46 438 47 HOH HOH . 
F 6 HOH A 47 439 48 HOH HOH . 
F 6 HOH A 48 440 49 HOH HOH . 
F 6 HOH A 49 441 50 HOH HOH . 
F 6 HOH A 50 442 51 HOH HOH . 
F 6 HOH A 51 443 52 HOH HOH . 
F 6 HOH A 52 444 53 HOH HOH . 
F 6 HOH A 53 445 54 HOH HOH . 
F 6 HOH A 54 446 55 HOH HOH . 
F 6 HOH A 55 447 56 HOH HOH . 
F 6 HOH A 56 448 57 HOH HOH . 
F 6 HOH A 57 449 58 HOH HOH . 
F 6 HOH A 58 450 59 HOH HOH . 
F 6 HOH A 59 451 60 HOH HOH . 
F 6 HOH A 60 452 61 HOH HOH . 
F 6 HOH A 61 453 62 HOH HOH . 
F 6 HOH A 62 454 63 HOH HOH . 
F 6 HOH A 63 455 64 HOH HOH . 
F 6 HOH A 64 456 65 HOH HOH . 
F 6 HOH A 65 457 66 HOH HOH . 
F 6 HOH A 66 458 67 HOH HOH . 
F 6 HOH A 67 459 68 HOH HOH . 
F 6 HOH A 68 460 69 HOH HOH . 
F 6 HOH A 69 461 70 HOH HOH . 
F 6 HOH A 70 462 71 HOH HOH . 
F 6 HOH A 71 463 72 HOH HOH . 
F 6 HOH A 72 464 73 HOH HOH . 
F 6 HOH A 73 465 74 HOH HOH . 
F 6 HOH A 74 466 75 HOH HOH . 
F 6 HOH A 75 467 77 HOH HOH . 
F 6 HOH A 76 468 79 HOH HOH . 
F 6 HOH A 77 469 81 HOH HOH . 
F 6 HOH A 78 470 82 HOH HOH . 
F 6 HOH A 79 471 83 HOH HOH . 
F 6 HOH A 80 472 84 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . B 2 4.758 -32.738 -4.67 1 50.56 ? PB ADP 389 A 1 
HETATM 2 O O1B ADP . . . B 2 6.024 -33.264 -4.066 1 46.7 ? O1B ADP 389 A 1 
HETATM 3 O O2B ADP . . . B 2 4.896 -32.397 -6.133 1 53.17 ? O2B ADP 389 A 1 
HETATM 4 O O3B ADP . . . B 2 3.507 -33.502 -4.28 1 53.23 ? O3B ADP 389 A 1 
HETATM 5 P PA ADP . . . B 2 5.596 -30.389 -3.262 1 45.49 ? PA ADP 389 A 1 
HETATM 6 O O1A ADP . . . B 2 6.373 -31.131 -2.235 1 44.7 ? O1A ADP 389 A 1 
HETATM 7 O O2A ADP . . . B 2 4.88 -29.213 -2.715 1 43.64 ? O2A ADP 389 A 1 
HETATM 8 O O3A ADP . . . B 2 4.471 -31.332 -3.938 1 50.45 ? O3A ADP 389 A 1 
HETATM 9 O O5' ADP . . . B 2 6.579 -29.995 -4.477 1 49.67 ? O5' ADP 389 A 1 
HETATM 10 C C5' ADP . . . B 2 6.154 -29.056 -5.454 1 47.93 ? C5' ADP 389 A 1 
HETATM 11 C C4' ADP . . . B 2 7.012 -29.194 -6.692 1 49.8 ? C4' ADP 389 A 1 
HETATM 12 O O4' ADP . . . B 2 8.235 -28.496 -6.459 1 49.07 ? O4' ADP 389 A 1 
HETATM 13 C C3' ADP . . . B 2 7.405 -30.63 -7 1 47.16 ? C3' ADP 389 A 1 
HETATM 14 O O3' ADP . . . B 2 6.422 -31.304 -7.808 1 48.44 ? O3' ADP 389 A 1 
HETATM 15 C C2' ADP . . . B 2 8.728 -30.452 -7.711 1 50.56 ? C2' ADP 389 A 1 
HETATM 16 O O2' ADP . . . B 2 8.511 -30.171 -9.097 1 53.07 ? O2' ADP 389 A 1 
HETATM 17 C C1' ADP . . . B 2 9.293 -29.177 -7.115 1 49 ? C1' ADP 389 A 1 
HETATM 18 N N9 ADP . . . B 2 10.33 -29.453 -6.099 1 46.58 ? N9 ADP 389 A 1 
HETATM 19 C C8 ADP . . . B 2 10.173 -29.454 -4.759 1 48.69 ? C8 ADP 389 A 1 
HETATM 20 N N7 ADP . . . B 2 11.349 -29.749 -4.146 1 44.26 ? N7 ADP 389 A 1 
HETATM 21 C C5 ADP . . . B 2 12.274 -29.928 -5.11 1 42.74 ? C5 ADP 389 A 1 
HETATM 22 C C6 ADP . . . B 2 13.713 -30.244 -5.168 1 37.73 ? C6 ADP 389 A 1 
HETATM 23 N N6 ADP . . . B 2 14.425 -30.452 -4.032 1 39.6 ? N6 ADP 389 A 1 
HETATM 24 N N1 ADP . . . B 2 14.278 -30.339 -6.396 1 45.39 ? N1 ADP 389 A 1 
HETATM 25 C C2 ADP . . . B 2 13.591 -30.165 -7.54 1 47 ? C2 ADP 389 A 1 
HETATM 26 N N3 ADP . . . B 2 12.283 -29.872 -7.562 1 48.09 ? N3 ADP 389 A 1 
HETATM 27 C C4 ADP . . . B 2 11.595 -29.737 -6.398 1 44.89 ? C4 ADP 389 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    35 
_model_server_stats.query_time_ms           320 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           27 
#