data_3TZ5 # _model_server_result.job_id YrVNVirXwWVmRFTYgi6Sbw _model_server_result.datetime_utc '2024-11-14 15:45:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3tz5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":392}' # _entry.id 3TZ5 # _exptl.entry_id 3TZ5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 164.201 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-PHENYL-BUTANOIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3TZ5 _cell.length_a 127.703 _cell.length_b 127.703 _cell.length_c 73.871 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TZ5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 94 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 279 A ASN 249 1_555 C MG MG . A MG 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc2 A O VAL 328 A VAL 298 1_555 D K K . A K 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.96 ? metalc ? metalc3 A O ASP 330 A ASP 300 1_555 D K K . A K 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.854 ? metalc ? metalc4 A O PHE 333 A PHE 303 1_555 D K K . A K 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.881 ? metalc ? metalc5 A O GLY 367 A GLY 337 1_555 D K K . A K 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.058 ? metalc ? metalc6 B O1A ADP . A ADP 389 1_555 C MG MG . A MG 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.182 ? metalc ? metalc7 B O1B ADP . A ADP 389 1_555 C MG MG . A MG 390 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.218 ? metalc ? metalc8 B O2A ADP . A ADP 389 1_555 D K K . A K 391 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.975 ? metalc ? metalc9 C MG MG . A MG 390 1_555 F O HOH . A HOH 397 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc10 C MG MG . A MG 390 1_555 F O HOH . A HOH 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc11 C MG MG . A MG 390 1_555 F O HOH . A HOH 412 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? # _chem_comp.formula 'C10 H12 O2' _chem_comp.formula_weight 164.201 _chem_comp.id CLT _chem_comp.mon_nstd_flag . _chem_comp.name '4-PHENYL-BUTANOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'GAMMA-PHENYL-BUTYRIC ACID' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CA CB1 CLT sing 114 n n CA CB2 CLT sing 115 n n CA HA1 CLT sing 116 n n CA HA2 CLT sing 117 n n CB1 CG CLT sing 118 n n CB1 HB11 CLT sing 119 n n CB1 HB12 CLT sing 120 n n CG CD CLT sing 121 n n CG HG1 CLT sing 122 n n CG HG2 CLT sing 123 n n CD CE1 CLT doub 124 n y CD CE2 CLT sing 125 n y CE1 CZ1 CLT sing 126 n y CE1 HE1 CLT sing 127 n n CE2 CZ2 CLT doub 128 n y CE2 HE2 CLT sing 129 n n CZ1 CH CLT doub 130 n y CZ1 HZ1 CLT sing 131 n n CZ2 CH CLT sing 132 n y CZ2 HZ2 CLT sing 133 n n CH HH CLT sing 134 n n CB2 OG1 CLT doub 135 n n CB2 OG2 CLT sing 136 n n OG2 HO2 CLT sing 137 n n # _atom_sites.entry_id 3TZ5 _atom_sites.fract_transf_matrix[1][1] 0.007831 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007831 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013537 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADP A 1 389 1 ADP ADP . C 3 MG A 1 390 1 MG MG . D 4 K A 1 391 1 K K . E 5 CLT A 1 392 1 CLT CLT . F 6 HOH A 1 393 1 HOH HOH . F 6 HOH A 2 394 2 HOH HOH . F 6 HOH A 3 395 3 HOH HOH . F 6 HOH A 4 396 4 HOH HOH . F 6 HOH A 5 397 5 HOH HOH . F 6 HOH A 6 398 6 HOH HOH . F 6 HOH A 7 399 7 HOH HOH . F 6 HOH A 8 400 8 HOH HOH . F 6 HOH A 9 401 9 HOH HOH . F 6 HOH A 10 402 10 HOH HOH . F 6 HOH A 11 403 11 HOH HOH . F 6 HOH A 12 404 12 HOH HOH . F 6 HOH A 13 405 13 HOH HOH . F 6 HOH A 14 406 14 HOH HOH . F 6 HOH A 15 407 15 HOH HOH . F 6 HOH A 16 408 16 HOH HOH . F 6 HOH A 17 409 17 HOH HOH . F 6 HOH A 18 410 18 HOH HOH . F 6 HOH A 19 411 19 HOH HOH . F 6 HOH A 20 412 20 HOH HOH . F 6 HOH A 21 413 21 HOH HOH . F 6 HOH A 22 414 22 HOH HOH . F 6 HOH A 23 415 23 HOH HOH . F 6 HOH A 24 416 24 HOH HOH . F 6 HOH A 25 417 25 HOH HOH . F 6 HOH A 26 418 26 HOH HOH . F 6 HOH A 27 419 27 HOH HOH . F 6 HOH A 28 420 28 HOH HOH . F 6 HOH A 29 421 29 HOH HOH . F 6 HOH A 30 422 30 HOH HOH . F 6 HOH A 31 423 32 HOH HOH . F 6 HOH A 32 424 33 HOH HOH . F 6 HOH A 33 425 34 HOH HOH . F 6 HOH A 34 426 35 HOH HOH . F 6 HOH A 35 427 36 HOH HOH . F 6 HOH A 36 428 37 HOH HOH . F 6 HOH A 37 429 38 HOH HOH . F 6 HOH A 38 430 39 HOH HOH . F 6 HOH A 39 431 40 HOH HOH . F 6 HOH A 40 432 41 HOH HOH . F 6 HOH A 41 433 42 HOH HOH . F 6 HOH A 42 434 43 HOH HOH . F 6 HOH A 43 435 44 HOH HOH . F 6 HOH A 44 436 45 HOH HOH . F 6 HOH A 45 437 46 HOH HOH . F 6 HOH A 46 438 47 HOH HOH . F 6 HOH A 47 439 48 HOH HOH . F 6 HOH A 48 440 49 HOH HOH . F 6 HOH A 49 441 51 HOH HOH . F 6 HOH A 50 442 52 HOH HOH . F 6 HOH A 51 443 53 HOH HOH . F 6 HOH A 52 444 54 HOH HOH . F 6 HOH A 53 445 55 HOH HOH . F 6 HOH A 54 446 56 HOH HOH . F 6 HOH A 55 447 57 HOH HOH . F 6 HOH A 56 448 58 HOH HOH . F 6 HOH A 57 449 61 HOH HOH . F 6 HOH A 58 450 62 HOH HOH . F 6 HOH A 59 451 63 HOH HOH . F 6 HOH A 60 452 65 HOH HOH . F 6 HOH A 61 453 66 HOH HOH . F 6 HOH A 62 454 67 HOH HOH . F 6 HOH A 63 455 68 HOH HOH . F 6 HOH A 64 456 69 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CA CLT . . . E 5 -8.626 -30.465 13.939 0.95 52.48 ? CA CLT 392 A 1 HETATM 2 C CB1 CLT . . . E 5 -8.752 -30.811 15.414 0.95 41.03 ? CB1 CLT 392 A 1 HETATM 3 C CG CLT . . . E 5 -9.753 -31.924 15.781 0.95 43.99 ? CG CLT 392 A 1 HETATM 4 C CD CLT . . . E 5 -9.477 -32.021 17.257 0.95 44.01 ? CD CLT 392 A 1 HETATM 5 C CE1 CLT . . . E 5 -8.487 -32.873 17.719 0.95 34.16 ? CE1 CLT 392 A 1 HETATM 6 C CE2 CLT . . . E 5 -10.147 -31.186 18.142 0.95 41.09 ? CE2 CLT 392 A 1 HETATM 7 C CZ1 CLT . . . E 5 -8.202 -32.909 19.079 0.95 43.93 ? CZ1 CLT 392 A 1 HETATM 8 C CZ2 CLT . . . E 5 -9.853 -31.221 19.504 0.95 35.52 ? CZ2 CLT 392 A 1 HETATM 9 C CH CLT . . . E 5 -8.879 -32.091 19.976 0.95 42.33 ? CH CLT 392 A 1 HETATM 10 C CB2 CLT . . . E 5 -8.031 -31.606 13.156 0.95 43.33 ? CB2 CLT 392 A 1 HETATM 11 O OG1 CLT . . . E 5 -8.394 -31.71 11.969 0.95 40.67 ? OG1 CLT 392 A 1 HETATM 12 O OG2 CLT . . . E 5 -7.22 -32.387 13.715 0.95 37.36 ? OG2 CLT 392 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 12 #