data_3TZC # _model_server_result.job_id vWgCJWex32Pht2IBha6D1Q _model_server_result.datetime_utc '2025-01-03 05:17:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3tzc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":249}' # _entry.id 3TZC # _exptl.entry_id 3TZC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3TZC _cell.length_a 62.353 _cell.length_b 62.353 _cell.length_c 383.381 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TZC _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression C,D,I,J,K,L,M,N,O,R,S 1 1 A,B,E,F,G,H,P,Q 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 1_655 x+1,y,z 1 0 0 0 1 0 0 0 1 62.353 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 224 n n PA O2A NAP sing 225 n n PA O5B NAP sing 226 n n PA O3 NAP sing 227 n n O2A HOA2 NAP sing 228 n n O5B C5B NAP sing 229 n n C5B C4B NAP sing 230 n n C5B H51A NAP sing 231 n n C5B H52A NAP sing 232 n n C4B O4B NAP sing 233 n n C4B C3B NAP sing 234 n n C4B H4B NAP sing 235 n n O4B C1B NAP sing 236 n n C3B O3B NAP sing 237 n n C3B C2B NAP sing 238 n n C3B H3B NAP sing 239 n n O3B HO3A NAP sing 240 n n C2B O2B NAP sing 241 n n C2B C1B NAP sing 242 n n C2B H2B NAP sing 243 n n O2B P2B NAP sing 244 n n C1B N9A NAP sing 245 n n C1B H1B NAP sing 246 n n N9A C8A NAP sing 247 n y N9A C4A NAP sing 248 n y C8A N7A NAP doub 249 n y C8A H8A NAP sing 250 n n N7A C5A NAP sing 251 n y C5A C6A NAP sing 252 n y C5A C4A NAP doub 253 n y C6A N6A NAP sing 254 n n C6A N1A NAP doub 255 n y N6A H61A NAP sing 256 n n N6A H62A NAP sing 257 n n N1A C2A NAP sing 258 n y C2A N3A NAP doub 259 n y C2A H2A NAP sing 260 n n N3A C4A NAP sing 261 n y O3 PN NAP sing 262 n n PN O1N NAP doub 263 n n PN O2N NAP sing 264 n n PN O5D NAP sing 265 n n O5D C5D NAP sing 266 n n C5D C4D NAP sing 267 n n C5D H51N NAP sing 268 n n C5D H52N NAP sing 269 n n C4D O4D NAP sing 270 n n C4D C3D NAP sing 271 n n C4D H4D NAP sing 272 n n O4D C1D NAP sing 273 n n C3D O3D NAP sing 274 n n C3D C2D NAP sing 275 n n C3D H3D NAP sing 276 n n O3D HO3N NAP sing 277 n n C2D O2D NAP sing 278 n n C2D C1D NAP sing 279 n n C2D H2D NAP sing 280 n n O2D HO2N NAP sing 281 n n C1D N1N NAP sing 282 n n C1D H1D NAP sing 283 n n N1N C2N NAP sing 284 n y N1N C6N NAP doub 285 n y C2N C3N NAP doub 286 n y C2N H2N NAP sing 287 n n C3N C7N NAP sing 288 n n C3N C4N NAP sing 289 n y C7N O7N NAP doub 290 n n C7N N7N NAP sing 291 n n N7N H71N NAP sing 292 n n N7N H72N NAP sing 293 n n C4N C5N NAP doub 294 n y C4N H4N NAP sing 295 n n C5N C6N NAP sing 296 n y C5N H5N NAP sing 297 n n C6N H6N NAP sing 298 n n P2B O1X NAP doub 299 n n P2B O2X NAP sing 300 n n P2B O3X NAP sing 301 n n O2X HOP2 NAP sing 302 n n O3X HOP3 NAP sing 303 n n # _atom_sites.entry_id 3TZC _atom_sites.fract_transf_matrix[1][1] 0.016038 _atom_sites.fract_transf_matrix[1][2] 0.009259 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018519 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002608 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NAP A 1 249 1 NAP NAP . F 3 SO4 A 1 250 2 SO4 SO4 . G 3 SO4 A 1 251 9 SO4 SO4 . H 3 SO4 A 1 252 11 SO4 SO4 . I 3 SO4 C 1 249 5 SO4 SO4 . J 3 SO4 C 1 250 6 SO4 SO4 . K 3 SO4 C 1 251 7 SO4 SO4 . L 3 SO4 D 1 249 1 SO4 SO4 . M 3 SO4 D 1 250 3 SO4 SO4 . N 3 SO4 D 1 251 4 SO4 SO4 . O 3 SO4 D 1 252 10 SO4 SO4 . P 4 HOH A 1 253 18 HOH HOH . P 4 HOH A 2 254 20 HOH HOH . P 4 HOH A 3 255 34 HOH HOH . P 4 HOH A 4 256 37 HOH HOH . P 4 HOH A 5 257 38 HOH HOH . P 4 HOH A 6 258 43 HOH HOH . P 4 HOH A 7 259 44 HOH HOH . P 4 HOH A 8 260 46 HOH HOH . P 4 HOH A 9 261 54 HOH HOH . P 4 HOH A 10 262 58 HOH HOH . P 4 HOH A 11 263 67 HOH HOH . P 4 HOH A 12 264 71 HOH HOH . P 4 HOH A 13 265 72 HOH HOH . P 4 HOH A 14 266 75 HOH HOH . P 4 HOH A 15 267 76 HOH HOH . P 4 HOH A 16 268 79 HOH HOH . P 4 HOH A 17 269 83 HOH HOH . P 4 HOH A 18 270 86 HOH HOH . P 4 HOH A 19 271 87 HOH HOH . P 4 HOH A 20 272 101 HOH HOH . P 4 HOH A 21 273 113 HOH HOH . P 4 HOH A 22 274 114 HOH HOH . P 4 HOH A 23 275 115 HOH HOH . P 4 HOH A 24 276 116 HOH HOH . P 4 HOH A 25 277 122 HOH HOH . P 4 HOH A 26 278 123 HOH HOH . P 4 HOH A 27 279 126 HOH HOH . P 4 HOH A 28 280 136 HOH HOH . P 4 HOH A 29 281 137 HOH HOH . P 4 HOH A 30 282 138 HOH HOH . P 4 HOH A 31 283 139 HOH HOH . P 4 HOH A 32 284 140 HOH HOH . P 4 HOH A 33 285 141 HOH HOH . P 4 HOH A 34 286 142 HOH HOH . P 4 HOH A 35 287 143 HOH HOH . P 4 HOH A 36 288 144 HOH HOH . P 4 HOH A 37 289 145 HOH HOH . P 4 HOH A 38 290 146 HOH HOH . P 4 HOH A 39 291 147 HOH HOH . P 4 HOH A 40 292 148 HOH HOH . P 4 HOH A 41 293 150 HOH HOH . P 4 HOH A 42 294 153 HOH HOH . P 4 HOH A 43 295 158 HOH HOH . P 4 HOH A 44 296 171 HOH HOH . P 4 HOH A 45 297 172 HOH HOH . P 4 HOH A 46 298 185 HOH HOH . Q 4 HOH B 1 249 2 HOH HOH . Q 4 HOH B 2 250 4 HOH HOH . Q 4 HOH B 3 251 5 HOH HOH . Q 4 HOH B 4 252 10 HOH HOH . Q 4 HOH B 5 253 13 HOH HOH . Q 4 HOH B 6 254 16 HOH HOH . Q 4 HOH B 7 255 17 HOH HOH . Q 4 HOH B 8 256 24 HOH HOH . Q 4 HOH B 9 257 29 HOH HOH . Q 4 HOH B 10 258 30 HOH HOH . Q 4 HOH B 11 259 41 HOH HOH . Q 4 HOH B 12 260 42 HOH HOH . Q 4 HOH B 13 261 49 HOH HOH . Q 4 HOH B 14 262 50 HOH HOH . Q 4 HOH B 15 263 59 HOH HOH . Q 4 HOH B 16 264 65 HOH HOH . Q 4 HOH B 17 265 68 HOH HOH . Q 4 HOH B 18 266 73 HOH HOH . Q 4 HOH B 19 267 74 HOH HOH . Q 4 HOH B 20 268 77 HOH HOH . Q 4 HOH B 21 269 80 HOH HOH . Q 4 HOH B 22 270 81 HOH HOH . Q 4 HOH B 23 271 97 HOH HOH . Q 4 HOH B 24 272 117 HOH HOH . Q 4 HOH B 25 273 124 HOH HOH . Q 4 HOH B 26 274 155 HOH HOH . Q 4 HOH B 27 275 156 HOH HOH . Q 4 HOH B 28 276 157 HOH HOH . Q 4 HOH B 29 277 159 HOH HOH . Q 4 HOH B 30 278 160 HOH HOH . Q 4 HOH B 31 279 176 HOH HOH . Q 4 HOH B 32 280 183 HOH HOH . Q 4 HOH B 33 281 184 HOH HOH . R 4 HOH C 1 252 11 HOH HOH . R 4 HOH C 2 253 12 HOH HOH . R 4 HOH C 3 254 14 HOH HOH . R 4 HOH C 4 255 19 HOH HOH . R 4 HOH C 5 256 21 HOH HOH . R 4 HOH C 6 257 22 HOH HOH . R 4 HOH C 7 258 31 HOH HOH . R 4 HOH C 8 259 32 HOH HOH . R 4 HOH C 9 260 35 HOH HOH . R 4 HOH C 10 261 36 HOH HOH . R 4 HOH C 11 262 40 HOH HOH . R 4 HOH C 12 263 45 HOH HOH . R 4 HOH C 13 264 52 HOH HOH . R 4 HOH C 14 265 53 HOH HOH . R 4 HOH C 15 266 56 HOH HOH . R 4 HOH C 16 267 57 HOH HOH . R 4 HOH C 17 268 61 HOH HOH . R 4 HOH C 18 269 84 HOH HOH . R 4 HOH C 19 270 85 HOH HOH . R 4 HOH C 20 271 96 HOH HOH . R 4 HOH C 21 272 98 HOH HOH . R 4 HOH C 22 273 99 HOH HOH . R 4 HOH C 23 274 100 HOH HOH . R 4 HOH C 24 275 102 HOH HOH . R 4 HOH C 25 276 105 HOH HOH . R 4 HOH C 26 277 106 HOH HOH . R 4 HOH C 27 278 107 HOH HOH . R 4 HOH C 28 279 108 HOH HOH . R 4 HOH C 29 280 109 HOH HOH . R 4 HOH C 30 281 110 HOH HOH . R 4 HOH C 31 282 112 HOH HOH . R 4 HOH C 32 283 118 HOH HOH . R 4 HOH C 33 284 121 HOH HOH . R 4 HOH C 34 285 151 HOH HOH . R 4 HOH C 35 286 154 HOH HOH . R 4 HOH C 36 287 161 HOH HOH . R 4 HOH C 37 288 162 HOH HOH . R 4 HOH C 38 289 165 HOH HOH . R 4 HOH C 39 290 167 HOH HOH . R 4 HOH C 40 291 168 HOH HOH . R 4 HOH C 41 292 169 HOH HOH . R 4 HOH C 42 293 170 HOH HOH . R 4 HOH C 43 294 180 HOH HOH . R 4 HOH C 44 295 181 HOH HOH . R 4 HOH C 45 296 182 HOH HOH . S 4 HOH D 1 253 1 HOH HOH . S 4 HOH D 2 254 3 HOH HOH . S 4 HOH D 3 255 6 HOH HOH . S 4 HOH D 4 256 7 HOH HOH . S 4 HOH D 5 257 8 HOH HOH . S 4 HOH D 6 258 9 HOH HOH . S 4 HOH D 7 259 15 HOH HOH . S 4 HOH D 8 260 23 HOH HOH . S 4 HOH D 9 261 25 HOH HOH . S 4 HOH D 10 262 26 HOH HOH . S 4 HOH D 11 263 27 HOH HOH . S 4 HOH D 12 264 28 HOH HOH . S 4 HOH D 13 265 33 HOH HOH . S 4 HOH D 14 266 47 HOH HOH . S 4 HOH D 15 267 51 HOH HOH . S 4 HOH D 16 268 60 HOH HOH . S 4 HOH D 17 269 62 HOH HOH . S 4 HOH D 18 270 64 HOH HOH . S 4 HOH D 19 271 69 HOH HOH . S 4 HOH D 20 272 70 HOH HOH . S 4 HOH D 21 273 78 HOH HOH . S 4 HOH D 22 274 82 HOH HOH . S 4 HOH D 23 275 88 HOH HOH . S 4 HOH D 24 276 90 HOH HOH . S 4 HOH D 25 277 103 HOH HOH . S 4 HOH D 26 278 104 HOH HOH . S 4 HOH D 27 279 119 HOH HOH . S 4 HOH D 28 280 120 HOH HOH . S 4 HOH D 29 281 125 HOH HOH . S 4 HOH D 30 282 149 HOH HOH . S 4 HOH D 31 283 152 HOH HOH . S 4 HOH D 32 284 163 HOH HOH . S 4 HOH D 33 285 164 HOH HOH . S 4 HOH D 34 286 166 HOH HOH . S 4 HOH D 35 287 173 HOH HOH . S 4 HOH D 36 288 174 HOH HOH . S 4 HOH D 37 289 175 HOH HOH . S 4 HOH D 38 290 178 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . E 2 -15.731 -2.19 21.726 1 90.66 ? PA NAP 249 A 1 HETATM 2 O O1A NAP . . . E 2 -16.257 -2.496 20.341 1 84.31 ? O1A NAP 249 A 1 HETATM 3 O O2A NAP . . . E 2 -14.728 -3.149 22.334 1 92.29 ? O2A NAP 249 A 1 HETATM 4 O O5B NAP . . . E 2 -15.164 -0.662 21.81 1 80.23 ? O5B NAP 249 A 1 HETATM 5 C C5B NAP . . . E 2 -15.221 0.317 20.758 1 70.12 ? C5B NAP 249 A 1 HETATM 6 C C4B NAP . . . E 2 -15.227 1.757 21.301 1 66.58 ? C4B NAP 249 A 1 HETATM 7 O O4B NAP . . . E 2 -16.479 2.082 21.942 1 68.35 ? O4B NAP 249 A 1 HETATM 8 C C3B NAP . . . E 2 -14.155 2.045 22.354 1 66.94 ? C3B NAP 249 A 1 HETATM 9 O O3B NAP . . . E 2 -13.509 3.302 22.071 1 64.66 ? O3B NAP 249 A 1 HETATM 10 C C2B NAP . . . E 2 -14.91 2.09 23.68 1 62.84 ? C2B NAP 249 A 1 HETATM 11 O O2B NAP . . . E 2 -14.233 2.846 24.692 1 61.88 ? O2B NAP 249 A 1 HETATM 12 C C1B NAP . . . E 2 -16.26 2.671 23.249 1 63.82 ? C1B NAP 249 A 1 HETATM 13 N N9A NAP . . . E 2 -17.38 2.393 24.221 1 58.81 ? N9A NAP 249 A 1 HETATM 14 C C8A NAP . . . E 2 -17.878 1.182 24.508 1 53.99 ? C8A NAP 249 A 1 HETATM 15 N N7A NAP . . . E 2 -18.874 1.277 25.414 1 53.94 ? N7A NAP 249 A 1 HETATM 16 C C5A NAP . . . E 2 -19.032 2.559 25.741 1 51.49 ? C5A NAP 249 A 1 HETATM 17 C C6A NAP . . . E 2 -19.921 3.308 26.66 1 52.62 ? C6A NAP 249 A 1 HETATM 18 N N6A NAP . . . E 2 -20.832 2.629 27.403 1 52.67 ? N6A NAP 249 A 1 HETATM 19 N N1A NAP . . . E 2 -19.779 4.664 26.721 1 48.79 ? N1A NAP 249 A 1 HETATM 20 C C2A NAP . . . E 2 -18.858 5.295 25.949 1 52.19 ? C2A NAP 249 A 1 HETATM 21 N N3A NAP . . . E 2 -18.005 4.651 25.095 1 51.85 ? N3A NAP 249 A 1 HETATM 22 C C4A NAP . . . E 2 -18.041 3.3 24.957 1 52.65 ? C4A NAP 249 A 1 HETATM 23 O O3 NAP . . . E 2 -16.965 -2.126 22.761 1 90.32 ? O3 NAP 249 A 1 HETATM 24 P P2B NAP . . . E 2 -13.011 2.174 25.516 1 64.8 ? P2B NAP 249 A 1 HETATM 25 O O1X NAP . . . E 2 -12.295 3.292 26.232 1 62.56 ? O1X NAP 249 A 1 HETATM 26 O O2X NAP . . . E 2 -13.712 1.199 26.414 1 57.78 ? O2X NAP 249 A 1 HETATM 27 O O3X NAP . . . E 2 -12.168 1.512 24.464 1 67.52 ? O3X NAP 249 A 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 43 _model_server_stats.query_time_ms 485 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 27 #