data_3TZR # _model_server_result.job_id baprhmdX4Mfsct6DifJbUA _model_server_result.datetime_utc '2024-11-09 23:25:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3tzr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1}' # _entry.id 3TZR # _exptl.entry_id 3TZR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3TZR _cell.length_a 32.054 _cell.length_b 33.582 _cell.length_c 81.046 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TZR _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N ? 3 G N N ? 3 L N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C MG MG . A MG 1 1_555 A OP1 U 9 A U 56 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? metalc ? metalc2 C MG MG . A MG 1 1_555 A O4 U 12 A U 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.764 ? metalc ? metalc3 C MG MG . A MG 1 1_555 M O HOH . A HOH 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.754 ? metalc ? metalc4 M O HOH . A HOH 8 1_555 L MG MG . B MG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.786 ? metalc ? metalc5 A OP2 U 9 A U 56 1_555 D MG MG . A MG 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.635 ? metalc ? metalc6 E MG MG . A MG 69 1_555 I O4 SO4 . A SO4 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.97 ? metalc ? metalc7 F MG MG . A MG 70 1_555 B OP2 C 8 B C 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.774 ? metalc ? metalc8 G MG MG . A MG 71 1_555 M O HOH . A HOH 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.642 ? metalc ? metalc9 L MG MG . B MG 1 1_555 B O2' C 14 B C 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.893 ? hydrog WATSON-CRICK hydrog1 A N3 C 1 A C 48 1_555 B N1 G 15 B G 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N4 C 1 A C 48 1_555 B O6 G 15 B G 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O2 C 1 A C 48 1_555 B N2 G 15 B G 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 G 2 A G 49 1_555 B N3 C 14 B C 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N2 G 2 A G 49 1_555 B O2 C 14 B C 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O6 G 2 A G 49 1_555 B N4 C 14 B C 114 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N1 A 3 A A 50 1_555 B N3 U 13 B U 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N6 A 3 A A 50 1_555 B O4 U 13 B U 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A N1 G 4 A G 51 1_555 B N3 C 12 B C 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N2 G 4 A G 51 1_555 B O2 C 12 B C 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A O6 G 4 A G 51 1_555 B N4 C 12 B C 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A N1 G 5 A G 52 1_555 B N3 C 11 B C 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N2 G 5 A G 52 1_555 B O2 C 11 B C 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A O6 G 5 A G 52 1_555 B N4 C 11 B C 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_5_PAIR hydrog15 A N1 A 6 A A 53 1_555 B N6 A 9 B A 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_5_PAIR hydrog16 A N6 A 6 A A 53 1_555 B N7 A 9 B A 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'A-C MISPAIR' hydrog17 A N6 A 10 A A 57 1_555 B O2 C 11 B C 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A N3 C 11 A C 58 1_555 B N1 G 10 B G 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N4 C 11 A C 58 1_555 B O6 G 10 B G 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A O2 C 11 A C 58 1_555 B N2 G 10 B G 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A N3 U 12 A U 59 1_555 B N1 A 9 B A 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A O4 U 12 A U 59 1_555 B N6 A 9 B A 109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A N1 G 13 A G 60 1_555 B N3 C 8 B C 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A N2 G 13 A G 60 1_555 B O2 C 8 B C 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A O6 G 13 A G 60 1_555 B N4 C 8 B C 108 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_28_PAIR hydrog26 A N3 U 14 A U 61 1_555 B O6 G 7 B G 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_28_PAIR hydrog27 A O2 U 14 A U 61 1_555 B N1 G 7 B G 107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 A N3 C 15 A C 62 1_555 B N1 G 5 B G 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 A N4 C 15 A C 62 1_555 B O6 G 5 B G 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 A O2 C 15 A C 62 1_555 B N2 G 5 B G 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_18_PAIR hydrog31 A N3 U 16 A U 63 1_555 B N3 C 4 B C 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_18_PAIR hydrog32 A O4 U 16 A U 63 1_555 B N4 C 4 B C 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_16_PAIR hydrog33 A N3 U 17 A U 64 1_555 B O2 U 3 B U 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_16_PAIR hydrog34 A O4 U 17 A U 64 1_555 B N3 U 3 B U 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog35 A N3 C 18 A C 65 1_555 B N1 G 2 B G 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog36 A N4 C 18 A C 65 1_555 B O6 G 2 B G 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog37 A O2 C 18 A C 65 1_555 B N2 G 2 B G 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog38 A N3 C 19 A C 66 1_555 B N1 G 1 B G 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog39 A N4 C 19 A C 66 1_555 B O6 G 1 B G 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog40 A O2 C 19 A C 66 1_555 B N2 G 1 B G 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3TZR _atom_sites.fract_transf_matrix[1][1] 0.031197 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.029778 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012339 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MG A 1 1 1 MG MG . D 3 MG A 1 68 1 MG MG . E 3 MG A 1 69 1 MG MG . F 3 MG A 1 70 1 MG MG . G 3 MG A 1 71 1 MG MG . H 4 SO4 A 1 72 1 SO4 SO4 . I 4 SO4 A 1 73 1 SO4 SO4 . J 4 SO4 A 1 74 1 SO4 SO4 . K 5 SS0 A 1 75 1 SS0 SS0 . L 3 MG B 1 1 1 MG MG . M 6 HOH A 1 2 2 HOH HOH . M 6 HOH A 2 4 4 HOH HOH . M 6 HOH A 3 5 5 HOH HOH . M 6 HOH A 4 8 8 HOH HOH . M 6 HOH A 5 10 10 HOH HOH . M 6 HOH A 6 12 12 HOH HOH . M 6 HOH A 7 15 15 HOH HOH . M 6 HOH A 8 16 16 HOH HOH . M 6 HOH A 9 18 18 HOH HOH . M 6 HOH A 10 19 19 HOH HOH . M 6 HOH A 11 20 20 HOH HOH . M 6 HOH A 12 26 26 HOH HOH . M 6 HOH A 13 27 27 HOH HOH . M 6 HOH A 14 28 28 HOH HOH . M 6 HOH A 15 30 30 HOH HOH . M 6 HOH A 16 31 31 HOH HOH . M 6 HOH A 17 32 32 HOH HOH . M 6 HOH A 18 35 35 HOH HOH . M 6 HOH A 19 40 40 HOH HOH . M 6 HOH A 20 41 41 HOH HOH . M 6 HOH A 21 43 43 HOH HOH . M 6 HOH A 22 44 44 HOH HOH . M 6 HOH A 23 46 46 HOH HOH . M 6 HOH A 24 47 47 HOH HOH . M 6 HOH A 25 76 76 HOH HOH . M 6 HOH A 26 77 77 HOH HOH . M 6 HOH A 27 78 78 HOH HOH . M 6 HOH A 28 79 48 HOH HOH . M 6 HOH A 29 80 80 HOH HOH . M 6 HOH A 30 81 50 HOH HOH . M 6 HOH A 31 82 51 HOH HOH . M 6 HOH A 32 83 52 HOH HOH . M 6 HOH A 33 84 54 HOH HOH . M 6 HOH A 34 85 55 HOH HOH . M 6 HOH A 35 86 57 HOH HOH . M 6 HOH A 36 87 61 HOH HOH . M 6 HOH A 37 88 63 HOH HOH . M 6 HOH A 38 89 64 HOH HOH . M 6 HOH A 39 90 65 HOH HOH . M 6 HOH A 40 91 68 HOH HOH . M 6 HOH A 41 92 72 HOH HOH . M 6 HOH A 42 93 75 HOH HOH . M 6 HOH A 43 94 53 HOH HOH . N 6 HOH B 1 3 3 HOH HOH . N 6 HOH B 2 6 6 HOH HOH . N 6 HOH B 3 7 7 HOH HOH . N 6 HOH B 4 9 9 HOH HOH . N 6 HOH B 5 11 11 HOH HOH . N 6 HOH B 6 13 13 HOH HOH . N 6 HOH B 7 14 14 HOH HOH . N 6 HOH B 8 17 17 HOH HOH . N 6 HOH B 9 21 21 HOH HOH . N 6 HOH B 10 22 22 HOH HOH . N 6 HOH B 11 23 23 HOH HOH . N 6 HOH B 12 24 24 HOH HOH . N 6 HOH B 13 25 25 HOH HOH . N 6 HOH B 14 29 29 HOH HOH . N 6 HOH B 15 33 33 HOH HOH . N 6 HOH B 16 34 34 HOH HOH . N 6 HOH B 17 36 36 HOH HOH . N 6 HOH B 18 37 37 HOH HOH . N 6 HOH B 19 38 38 HOH HOH . N 6 HOH B 20 39 39 HOH HOH . N 6 HOH B 21 42 42 HOH HOH . N 6 HOH B 22 45 45 HOH HOH . N 6 HOH B 23 49 49 HOH HOH . N 6 HOH B 24 56 56 HOH HOH . N 6 HOH B 25 58 58 HOH HOH . N 6 HOH B 26 59 59 HOH HOH . N 6 HOH B 27 60 60 HOH HOH . N 6 HOH B 28 62 62 HOH HOH . N 6 HOH B 29 66 66 HOH HOH . N 6 HOH B 30 67 67 HOH HOH . N 6 HOH B 31 69 69 HOH HOH . N 6 HOH B 32 70 70 HOH HOH . N 6 HOH B 33 71 71 HOH HOH . N 6 HOH B 34 73 73 HOH HOH . N 6 HOH B 35 74 74 HOH HOH . N 6 HOH B 36 79 79 HOH HOH . N 6 HOH B 37 81 81 HOH HOH . N 6 HOH B 38 117 1 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x 11.411 _atom_site.Cartn_y 0.658 _atom_site.Cartn_z -8.54 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 32.64 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 1 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 280 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #