data_3TZV # _model_server_result.job_id gaLXQzESi8Oru4_Z-HZgEg _model_server_result.datetime_utc '2025-01-10 12:12:08' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3tzv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":303}' # _entry.id 3TZV # _exptl.entry_id 3TZV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 522.675 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(4R,7R,18E)-4,7-dihydroxy-N,N,N-trimethyl-10-oxo-3,5,9-trioxa-4-phosphaheptacos-18-en-1-aminium 4-oxide' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3TZV _cell.length_a 66.591 _cell.length_b 117.605 _cell.length_c 190.656 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TZV _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression C,D,E,F,G,H,I,J,K,L,M 1 1 A,B 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id H _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 5 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 5 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 FUC _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O6 _pdbx_entity_branch_link.leaving_atom_id_2 HO6 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 5 n G NAG 1 E 1 NAG C 1000 NAG 5 n G FUC 2 E 2 FUC C 1001 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 25 A CYS 22 1_555 A SG CYS 92 A CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf2 A SG CYS 139 A CYS 136 1_555 A SG CYS 189 A CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 A SG CYS 164 A CYS 161 1_555 B SG CYS 176 B CYS 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf4 B SG CYS 25 B CYS 23 1_555 B SG CYS 93 B CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf5 B SG CYS 150 B CYS 148 1_555 B SG CYS 215 B CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf6 C SG CYS 101 C CYS 102 1_555 C SG CYS 165 C CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf7 C SG CYS 205 C CYS 207 1_555 C SG CYS 260 C CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf8 D SG CYS 25 D CYS 25 1_555 D SG CYS 80 D CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf9 E SG CYS 25 G CYS 22 1_555 E SG CYS 92 G CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf10 E SG CYS 139 G CYS 136 1_555 E SG CYS 189 G CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf11 E SG CYS 164 G CYS 161 1_555 F SG CYS 176 H CYS 174 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf12 F SG CYS 25 H CYS 23 1_555 F SG CYS 93 H CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf13 F SG CYS 150 H CYS 148 1_555 F SG CYS 215 H CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? covale ? covale1 C ND2 ASN 19 C ASN 20 1_555 G C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale2 G O6 NAG . E NAG 1 1_555 G C1 FUC . E FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? # _chem_comp.formula 'C26 H53 N O7 P 1' _chem_comp.formula_weight 522.675 _chem_comp.id LSC _chem_comp.mon_nstd_flag . _chem_comp.name '(4R,7R,18E)-4,7-dihydroxy-N,N,N-trimethyl-10-oxo-3,5,9-trioxa-4-phosphaheptacos-18-en-1-aminium 4-oxide' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C1 LSC sing 286 n n C1 H1 LSC sing 287 n n C1 H1A LSC sing 288 n n C1 H1B LSC sing 289 n n C3 C2 LSC sing 290 n n C2 H2 LSC sing 291 n n C2 H2A LSC sing 292 n n C4 C3 LSC sing 293 n n C3 H3 LSC sing 294 n n C3 H3A LSC sing 295 n n C5 C4 LSC sing 296 n n C4 H4 LSC sing 297 n n C4 H4A LSC sing 298 n n C6 C5 LSC sing 299 n n C5 H5 LSC sing 300 n n C5 H5A LSC sing 301 n n C7 C6 LSC sing 302 n n C6 H6 LSC sing 303 n n C6 H6A LSC sing 304 n n C8 C7 LSC sing 305 n n C7 H7 LSC sing 306 n n C7 H7A LSC sing 307 n n C9 C8 LSC sing 308 n n C8 H8 LSC sing 309 n n C8 H8A LSC sing 310 n n C10 C9 LSC doub 311 e n C9 H9 LSC sing 312 n n C11 C10 LSC sing 313 n n C10 H10 LSC sing 314 n n C11 C12 LSC sing 315 n n C11 H11 LSC sing 316 n n C11 H11A LSC sing 317 n n C13 C12 LSC sing 318 n n C12 H12 LSC sing 319 n n C12 H12A LSC sing 320 n n C14 C13 LSC sing 321 n n C13 H13 LSC sing 322 n n C13 H13A LSC sing 323 n n C15 C14 LSC sing 324 n n C14 H14 LSC sing 325 n n C14 H14A LSC sing 326 n n C16 C15 LSC sing 327 n n C15 H15 LSC sing 328 n n C15 H15A LSC sing 329 n n C17 C16 LSC sing 330 n n C16 H16 LSC sing 331 n n C16 H16A LSC sing 332 n n C18 C17 LSC sing 333 n n C17 H17 LSC sing 334 n n C17 H17A LSC sing 335 n n O19 C18 LSC sing 336 n n C18 O32 LSC doub 337 n n C20 O19 LSC sing 338 n n C21 C20 LSC sing 339 n n C20 H20 LSC sing 340 n n C20 H20A LSC sing 341 n n C22 C21 LSC sing 342 n n O33 C21 LSC sing 343 n n C21 H21 LSC sing 344 n n O23 C22 LSC sing 345 n n C22 H22 LSC sing 346 n n C22 H22A LSC sing 347 n n P24 O23 LSC sing 348 n n O35 P24 LSC sing 349 n n O34 P24 LSC doub 350 n n P24 O25 LSC sing 351 n n O25 HO25 LSC sing 352 n n C31 C30 LSC sing 353 n n C30 O35 LSC sing 354 n n C30 H30 LSC sing 355 n n C30 H30A LSC sing 356 n n N32 C31 LSC sing 357 n n C31 H31 LSC sing 358 n n C31 H31A LSC sing 359 n n C33 N32 LSC sing 360 n n C35 N32 LSC sing 361 n n N32 C34 LSC sing 362 n n C33 H33 LSC sing 363 n n C33 H33A LSC sing 364 n n C33 H33B LSC sing 365 n n O33 HO33 LSC sing 366 n n C34 H34 LSC sing 367 n n C34 H34A LSC sing 368 n n C34 H34B LSC sing 369 n n C35 H35 LSC sing 370 n n C35 H35A LSC sing 371 n n C35 H35B LSC sing 372 n n # _atom_sites.entry_id 3TZV _atom_sites.fract_transf_matrix[1][1] 0.015017 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008503 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005245 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 6 LSC C 1 303 2000 LSC LSC . I 7 HEX C 1 304 2002 HEX HEX . J 8 D12 C 1 305 2001 D12 D12 . K 9 GOL C 1 306 1 GOL GOL . L 10 HOH C 1 401 2003 HOH HOH . M 10 HOH G 1 1001 1001 HOH HOH . M 10 HOH G 2 1002 1002 HOH HOH . M 10 HOH G 3 1003 1003 HOH HOH . M 10 HOH G 4 1004 1000 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LSC . . . H 6 -45.257 -0.868 84.876 1 55.88 ? C1 LSC 303 C 1 HETATM 2 C C2 LSC . . . H 6 -45.133 -1.332 83.44 1 56.76 ? C2 LSC 303 C 1 HETATM 3 C C3 LSC . . . H 6 -43.678 -1.601 83.067 1 53.53 ? C3 LSC 303 C 1 HETATM 4 C C4 LSC . . . H 6 -43.566 -2.071 81.624 1 52.54 ? C4 LSC 303 C 1 HETATM 5 C C5 LSC . . . H 6 -42.115 -2.074 81.159 1 63.56 ? C5 LSC 303 C 1 HETATM 6 C C6 LSC . . . H 6 -42.034 -2.397 79.67 1 77.42 ? C6 LSC 303 C 1 HETATM 7 C C7 LSC . . . H 6 -41.596 -3.836 79.416 1 86.83 ? C7 LSC 303 C 1 HETATM 8 C C8 LSC . . . H 6 -40.162 -3.862 78.901 1 90.97 ? C8 LSC 303 C 1 HETATM 9 C C9 LSC . . . H 6 -40.11 -3.186 77.552 1 94.18 ? C9 LSC 303 C 1 HETATM 10 C C10 LSC . . . H 6 -39.062 -2.437 77.222 1 99.37 ? C10 LSC 303 C 1 HETATM 11 C C11 LSC . . . H 6 -39.018 -1.765 75.873 1 107.35 ? C11 LSC 303 C 1 HETATM 12 C C12 LSC . . . H 6 -38.28 -0.436 75.989 1 117.29 ? C12 LSC 303 C 1 HETATM 13 C C13 LSC . . . H 6 -36.993 -0.442 75.175 1 125.82 ? C13 LSC 303 C 1 HETATM 14 C C14 LSC . . . H 6 -36.645 0.967 74.707 1 131.61 ? C14 LSC 303 C 1 HETATM 15 C C15 LSC . . . H 6 -36.334 0.993 73.214 1 134.98 ? C15 LSC 303 C 1 HETATM 16 C C16 LSC . . . H 6 -34.961 0.397 72.919 1 137.05 ? C16 LSC 303 C 1 HETATM 17 C C17 LSC . . . H 6 -34.73 0.298 71.416 1 136.47 ? C17 LSC 303 C 1 HETATM 18 C C18 LSC . . . H 6 -33.321 -0.167 71.137 1 136.49 ? C18 LSC 303 C 1 HETATM 19 O O19 LSC . . . H 6 -32.334 0.747 70.583 1 140.46 ? O19 LSC 303 C 1 HETATM 20 C C20 LSC . . . H 6 -31.192 0.21 69.919 1 139.88 ? C20 LSC 303 C 1 HETATM 21 C C21 LSC . . . H 6 -30.059 1.229 69.868 1 139.5 ? C21 LSC 303 C 1 HETATM 22 C C22 LSC . . . H 6 -30.256 2.21 68.718 1 141.46 ? C22 LSC 303 C 1 HETATM 23 O O23 LSC . . . H 6 -28.978 2.723 68.337 1 142.97 ? O23 LSC 303 C 1 HETATM 24 P P24 LSC . . . H 6 -28.816 4.139 67.581 1 193.63 ? P24 LSC 303 C 1 HETATM 25 O O25 LSC . . . H 6 -29.593 5.18 68.348 1 193.09 ? O25 LSC 303 C 1 HETATM 26 C C30 LSC . . . H 6 -30.96 3.62 66.14 1 159.95 ? C30 LSC 303 C 1 HETATM 27 C C31 LSC . . . H 6 -31.564 4.136 64.84 1 153.93 ? C31 LSC 303 C 1 HETATM 28 N N32 LSC . . . H 6 -32.778 3.365 64.55 1 146.23 ? N32 LSC 303 C 1 HETATM 29 O O32 LSC . . . H 6 -32.988 -1.315 71.382 1 133.55 ? O32 LSC 303 C 1 HETATM 30 C C33 LSC . . . H 6 -33.657 4.137 63.661 1 144.62 ? C33 LSC 303 C 1 HETATM 31 O O33 LSC . . . H 6 -28.815 0.54 69.697 1 139.35 ? O33 LSC 303 C 1 HETATM 32 C C34 LSC . . . H 6 -33.475 3.067 65.81 1 142.08 ? C34 LSC 303 C 1 HETATM 33 O O34 LSC . . . H 6 -27.347 4.35 67.307 1 192.32 ? O34 LSC 303 C 1 HETATM 34 C C35 LSC . . . H 6 -32.399 2.111 63.886 1 145.06 ? C35 LSC 303 C 1 HETATM 35 O O35 LSC . . . H 6 -29.566 3.919 66.174 1 163.47 ? O35 LSC 303 C 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 35 #