data_3TZY # _model_server_result.job_id kzIkYNxE3yyxSvxMoYvEaA _model_server_result.datetime_utc '2025-07-27 15:01:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3tzy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":2002}' # _entry.id 3TZY # _exptl.entry_id 3TZY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3TZY _cell.length_a 105.89 _cell.length_b 105.89 _cell.length_c 259.62 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3TZY _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,G,H,I,J,P,R 1 1 B,C,K,L,M,N,O,Q 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N ? 4 L N N ? 4 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A OG SER 230 A SER 801 1_555 E C1 PLM . A PLM 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.363 ? covale ? covale2 B OG SER 230 B SER 801 1_555 K C1 PLM . B PLM 2001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.309 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3TZY _atom_sites.fract_transf_matrix[1][1] 0.009444 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009444 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003852 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 PLM A 1 2001 2001 PLM PLM . F 4 GOL A 1 2002 4 GOL GOL . G 4 GOL A 1 2003 5 GOL GOL . H 4 GOL A 1 2004 6 GOL GOL . I 4 GOL A 1 2005 7 GOL GOL . J 4 GOL A 1 2006 8 GOL GOL . K 3 PLM B 1 2001 2001 PLM PLM . L 4 GOL B 1 2002 2 GOL GOL . M 4 GOL B 1 2003 3 GOL GOL . N 5 SO4 B 1 2004 9 SO4 SO4 . O 5 SO4 C 1 101 13 SO4 SO4 . P 6 HOH A 1 2101 3 HOH HOH . P 6 HOH A 2 2102 9 HOH HOH . P 6 HOH A 3 2103 12 HOH HOH . P 6 HOH A 4 2104 14 HOH HOH . P 6 HOH A 5 2105 15 HOH HOH . P 6 HOH A 6 2106 16 HOH HOH . P 6 HOH A 7 2107 17 HOH HOH . P 6 HOH A 8 2108 18 HOH HOH . P 6 HOH A 9 2109 20 HOH HOH . P 6 HOH A 10 2110 22 HOH HOH . P 6 HOH A 11 2111 23 HOH HOH . P 6 HOH A 12 2112 24 HOH HOH . P 6 HOH A 13 2113 30 HOH HOH . P 6 HOH A 14 2114 33 HOH HOH . P 6 HOH A 15 2115 35 HOH HOH . P 6 HOH A 16 2116 38 HOH HOH . P 6 HOH A 17 2117 39 HOH HOH . P 6 HOH A 18 2118 41 HOH HOH . P 6 HOH A 19 2119 43 HOH HOH . P 6 HOH A 20 2120 46 HOH HOH . P 6 HOH A 21 2121 48 HOH HOH . P 6 HOH A 22 2122 52 HOH HOH . P 6 HOH A 23 2123 54 HOH HOH . P 6 HOH A 24 2124 57 HOH HOH . P 6 HOH A 25 2125 60 HOH HOH . P 6 HOH A 26 2126 61 HOH HOH . P 6 HOH A 27 2127 63 HOH HOH . P 6 HOH A 28 2128 64 HOH HOH . P 6 HOH A 29 2129 66 HOH HOH . P 6 HOH A 30 2130 70 HOH HOH . P 6 HOH A 31 2131 71 HOH HOH . P 6 HOH A 32 2132 77 HOH HOH . P 6 HOH A 33 2133 80 HOH HOH . P 6 HOH A 34 2134 81 HOH HOH . P 6 HOH A 35 2135 83 HOH HOH . P 6 HOH A 36 2136 84 HOH HOH . P 6 HOH A 37 2137 85 HOH HOH . P 6 HOH A 38 2138 86 HOH HOH . P 6 HOH A 39 2139 90 HOH HOH . P 6 HOH A 40 2140 93 HOH HOH . P 6 HOH A 41 2141 94 HOH HOH . P 6 HOH A 42 2142 95 HOH HOH . P 6 HOH A 43 2143 96 HOH HOH . P 6 HOH A 44 2144 97 HOH HOH . P 6 HOH A 45 2145 100 HOH HOH . P 6 HOH A 46 2146 101 HOH HOH . P 6 HOH A 47 2147 103 HOH HOH . P 6 HOH A 48 2148 104 HOH HOH . P 6 HOH A 49 2149 108 HOH HOH . P 6 HOH A 50 2150 110 HOH HOH . P 6 HOH A 51 2151 114 HOH HOH . P 6 HOH A 52 2152 115 HOH HOH . P 6 HOH A 53 2153 117 HOH HOH . P 6 HOH A 54 2154 127 HOH HOH . P 6 HOH A 55 2155 130 HOH HOH . P 6 HOH A 56 2156 131 HOH HOH . P 6 HOH A 57 2157 133 HOH HOH . P 6 HOH A 58 2158 134 HOH HOH . P 6 HOH A 59 2159 136 HOH HOH . P 6 HOH A 60 2160 138 HOH HOH . P 6 HOH A 61 2161 149 HOH HOH . P 6 HOH A 62 2162 152 HOH HOH . P 6 HOH A 63 2163 154 HOH HOH . P 6 HOH A 64 2164 155 HOH HOH . P 6 HOH A 65 2165 156 HOH HOH . P 6 HOH A 66 2166 157 HOH HOH . P 6 HOH A 67 2167 158 HOH HOH . P 6 HOH A 68 2168 159 HOH HOH . P 6 HOH A 69 2169 160 HOH HOH . P 6 HOH A 70 2170 161 HOH HOH . P 6 HOH A 71 2171 165 HOH HOH . P 6 HOH A 72 2172 166 HOH HOH . P 6 HOH A 73 2173 171 HOH HOH . P 6 HOH A 74 2174 176 HOH HOH . P 6 HOH A 75 2175 177 HOH HOH . P 6 HOH A 76 2176 178 HOH HOH . P 6 HOH A 77 2177 179 HOH HOH . P 6 HOH A 78 2178 180 HOH HOH . P 6 HOH A 79 2179 181 HOH HOH . P 6 HOH A 80 2180 182 HOH HOH . P 6 HOH A 81 2181 183 HOH HOH . P 6 HOH A 82 2182 184 HOH HOH . P 6 HOH A 83 2183 185 HOH HOH . P 6 HOH A 84 2184 190 HOH HOH . P 6 HOH A 85 2185 191 HOH HOH . P 6 HOH A 86 2186 192 HOH HOH . P 6 HOH A 87 2187 193 HOH HOH . P 6 HOH A 88 2188 194 HOH HOH . P 6 HOH A 89 2189 195 HOH HOH . P 6 HOH A 90 2190 196 HOH HOH . P 6 HOH A 91 2191 197 HOH HOH . P 6 HOH A 92 2192 198 HOH HOH . P 6 HOH A 93 2193 199 HOH HOH . P 6 HOH A 94 2194 200 HOH HOH . P 6 HOH A 95 2195 201 HOH HOH . P 6 HOH A 96 2196 203 HOH HOH . P 6 HOH A 97 2197 204 HOH HOH . P 6 HOH A 98 2198 205 HOH HOH . P 6 HOH A 99 2199 206 HOH HOH . P 6 HOH A 100 2200 207 HOH HOH . P 6 HOH A 101 2201 208 HOH HOH . P 6 HOH A 102 2202 210 HOH HOH . P 6 HOH A 103 2203 211 HOH HOH . P 6 HOH A 104 2204 213 HOH HOH . P 6 HOH A 105 2205 215 HOH HOH . P 6 HOH A 106 2206 217 HOH HOH . P 6 HOH A 107 2207 219 HOH HOH . P 6 HOH A 108 2208 220 HOH HOH . P 6 HOH A 109 2209 223 HOH HOH . P 6 HOH A 110 2210 234 HOH HOH . P 6 HOH A 111 2211 235 HOH HOH . P 6 HOH A 112 2212 236 HOH HOH . P 6 HOH A 113 2213 237 HOH HOH . Q 6 HOH B 1 2101 1 HOH HOH . Q 6 HOH B 2 2102 4 HOH HOH . Q 6 HOH B 3 2103 7 HOH HOH . Q 6 HOH B 4 2104 8 HOH HOH . Q 6 HOH B 5 2105 10 HOH HOH . Q 6 HOH B 6 2106 11 HOH HOH . Q 6 HOH B 7 2107 13 HOH HOH . Q 6 HOH B 8 2108 19 HOH HOH . Q 6 HOH B 9 2109 21 HOH HOH . Q 6 HOH B 10 2110 25 HOH HOH . Q 6 HOH B 11 2111 26 HOH HOH . Q 6 HOH B 12 2112 27 HOH HOH . Q 6 HOH B 13 2113 28 HOH HOH . Q 6 HOH B 14 2114 29 HOH HOH . Q 6 HOH B 15 2115 31 HOH HOH . Q 6 HOH B 16 2116 32 HOH HOH . Q 6 HOH B 17 2117 34 HOH HOH . Q 6 HOH B 18 2118 36 HOH HOH . Q 6 HOH B 19 2119 37 HOH HOH . Q 6 HOH B 20 2120 40 HOH HOH . Q 6 HOH B 21 2121 42 HOH HOH . Q 6 HOH B 22 2122 44 HOH HOH . Q 6 HOH B 23 2123 45 HOH HOH . Q 6 HOH B 24 2124 47 HOH HOH . Q 6 HOH B 25 2125 49 HOH HOH . Q 6 HOH B 26 2126 50 HOH HOH . Q 6 HOH B 27 2127 51 HOH HOH . Q 6 HOH B 28 2128 53 HOH HOH . Q 6 HOH B 29 2129 55 HOH HOH . Q 6 HOH B 30 2130 56 HOH HOH . Q 6 HOH B 31 2131 58 HOH HOH . Q 6 HOH B 32 2132 59 HOH HOH . Q 6 HOH B 33 2133 62 HOH HOH . Q 6 HOH B 34 2134 65 HOH HOH . Q 6 HOH B 35 2135 67 HOH HOH . Q 6 HOH B 36 2136 68 HOH HOH . Q 6 HOH B 37 2137 69 HOH HOH . Q 6 HOH B 38 2138 72 HOH HOH . Q 6 HOH B 39 2139 73 HOH HOH . Q 6 HOH B 40 2140 74 HOH HOH . Q 6 HOH B 41 2141 75 HOH HOH . Q 6 HOH B 42 2142 76 HOH HOH . Q 6 HOH B 43 2143 78 HOH HOH . Q 6 HOH B 44 2144 79 HOH HOH . Q 6 HOH B 45 2145 82 HOH HOH . Q 6 HOH B 46 2146 87 HOH HOH . Q 6 HOH B 47 2147 88 HOH HOH . Q 6 HOH B 48 2148 89 HOH HOH . Q 6 HOH B 49 2149 91 HOH HOH . Q 6 HOH B 50 2150 92 HOH HOH . Q 6 HOH B 51 2151 98 HOH HOH . Q 6 HOH B 52 2152 99 HOH HOH . Q 6 HOH B 53 2153 102 HOH HOH . Q 6 HOH B 54 2154 105 HOH HOH . Q 6 HOH B 55 2155 106 HOH HOH . Q 6 HOH B 56 2156 107 HOH HOH . Q 6 HOH B 57 2157 109 HOH HOH . Q 6 HOH B 58 2158 111 HOH HOH . Q 6 HOH B 59 2159 112 HOH HOH . Q 6 HOH B 60 2160 113 HOH HOH . Q 6 HOH B 61 2161 116 HOH HOH . Q 6 HOH B 62 2162 118 HOH HOH . Q 6 HOH B 63 2163 119 HOH HOH . Q 6 HOH B 64 2164 120 HOH HOH . Q 6 HOH B 65 2165 121 HOH HOH . Q 6 HOH B 66 2166 122 HOH HOH . Q 6 HOH B 67 2167 123 HOH HOH . Q 6 HOH B 68 2168 124 HOH HOH . Q 6 HOH B 69 2169 125 HOH HOH . Q 6 HOH B 70 2170 126 HOH HOH . Q 6 HOH B 71 2171 128 HOH HOH . Q 6 HOH B 72 2172 129 HOH HOH . Q 6 HOH B 73 2173 132 HOH HOH . Q 6 HOH B 74 2174 135 HOH HOH . Q 6 HOH B 75 2175 137 HOH HOH . Q 6 HOH B 76 2176 139 HOH HOH . Q 6 HOH B 77 2177 140 HOH HOH . Q 6 HOH B 78 2178 141 HOH HOH . Q 6 HOH B 79 2179 142 HOH HOH . Q 6 HOH B 80 2180 143 HOH HOH . Q 6 HOH B 81 2181 144 HOH HOH . Q 6 HOH B 82 2182 145 HOH HOH . Q 6 HOH B 83 2183 146 HOH HOH . Q 6 HOH B 84 2184 147 HOH HOH . Q 6 HOH B 85 2185 148 HOH HOH . Q 6 HOH B 86 2186 150 HOH HOH . Q 6 HOH B 87 2187 151 HOH HOH . Q 6 HOH B 88 2188 153 HOH HOH . Q 6 HOH B 89 2189 162 HOH HOH . Q 6 HOH B 90 2190 163 HOH HOH . Q 6 HOH B 91 2191 164 HOH HOH . Q 6 HOH B 92 2192 167 HOH HOH . Q 6 HOH B 93 2193 168 HOH HOH . Q 6 HOH B 94 2194 169 HOH HOH . Q 6 HOH B 95 2195 170 HOH HOH . Q 6 HOH B 96 2196 172 HOH HOH . Q 6 HOH B 97 2197 173 HOH HOH . Q 6 HOH B 98 2198 174 HOH HOH . Q 6 HOH B 99 2199 175 HOH HOH . Q 6 HOH B 100 2200 186 HOH HOH . Q 6 HOH B 101 2201 187 HOH HOH . Q 6 HOH B 102 2202 188 HOH HOH . Q 6 HOH B 103 2203 189 HOH HOH . Q 6 HOH B 104 2204 209 HOH HOH . Q 6 HOH B 105 2205 212 HOH HOH . Q 6 HOH B 106 2206 214 HOH HOH . Q 6 HOH B 107 2207 216 HOH HOH . Q 6 HOH B 108 2208 218 HOH HOH . Q 6 HOH B 109 2209 221 HOH HOH . Q 6 HOH B 110 2210 222 HOH HOH . Q 6 HOH B 111 2211 224 HOH HOH . Q 6 HOH B 112 2212 225 HOH HOH . Q 6 HOH B 113 2213 226 HOH HOH . Q 6 HOH B 114 2214 227 HOH HOH . Q 6 HOH B 115 2215 228 HOH HOH . Q 6 HOH B 116 2216 229 HOH HOH . Q 6 HOH B 117 2217 230 HOH HOH . Q 6 HOH B 118 2218 231 HOH HOH . Q 6 HOH B 119 2219 232 HOH HOH . Q 6 HOH B 120 2220 233 HOH HOH . R 6 HOH D 1 101 233 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . L 4 -2.887 14.181 -50.217 1 58.71 ? C1 GOL 2002 B 1 HETATM 2 O O1 GOL . . . L 4 -2.995 15.095 -49.081 1 47.15 ? O1 GOL 2002 B 1 HETATM 3 C C2 GOL . . . L 4 -1.503 14.173 -50.899 1 54.42 ? C2 GOL 2002 B 1 HETATM 4 O O2 GOL . . . L 4 -1.29 15.399 -51.592 1 52.55 ? O2 GOL 2002 B 1 HETATM 5 C C3 GOL . . . L 4 -1.32 13.056 -51.927 1 62.32 ? C3 GOL 2002 B 1 HETATM 6 O O3 GOL . . . L 4 -0.428 13.512 -52.969 1 58.72 ? O3 GOL 2002 B 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 77 _model_server_stats.create_model_time_ms 92 _model_server_stats.query_time_ms 363 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #