data_3U00 # _model_server_result.job_id 89JRpqAKQb4uHmNlRTIgZg _model_server_result.datetime_utc '2024-10-19 11:46:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3u00 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":109}' # _entry.id 3U00 # _exptl.entry_id 3U00 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 94.971 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHATE ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3U00 _cell.length_a 32.509 _cell.length_b 39.454 _cell.length_c 69.985 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3U00 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 19 A CYS 19 1_555 A SG CYS 68 A CYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 75 A CYS 75 1_555 ? A ? ? A ? ? ? ? ? ? ? 2.002 ? disulf ? disulf3 A SG CYS 30 A CYS 30 1_555 A SG CYS 75 A CYS 75 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.995 ? disulf ? disulf4 A SG CYS 48 A CYS 48 1_555 A SG CYS 90 A CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? disulf ? disulf5 A SG CYS 87 A CYS 87 1_555 A SG CYS 104 A CYS 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? covale ? covale1 A C PCA 1 A PCA 1 1_555 A N ASP 2 A ASP 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? # _chem_comp.formula 'O4 P -3' _chem_comp.formula_weight 94.971 _chem_comp.id PO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 PO4 doub 276 n n P O2 PO4 sing 277 n n P O3 PO4 sing 278 n n P O4 PO4 sing 279 n n # _atom_sites.entry_id 3U00 _atom_sites.fract_transf_matrix[1][1] 0.030761 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025346 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014289 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 105 1 PO4 PO4 . C 2 PO4 A 1 106 2 PO4 PO4 . D 2 PO4 A 1 107 3 PO4 PO4 . E 2 PO4 A 1 108 4 PO4 PO4 . F 2 PO4 A 1 109 5 PO4 PO4 . G 3 HOH A 1 110 110 HOH HOH . G 3 HOH A 2 111 111 HOH HOH . G 3 HOH A 3 112 112 HOH HOH . G 3 HOH A 4 113 1 HOH HOH . G 3 HOH A 5 114 2 HOH HOH . G 3 HOH A 6 115 3 HOH HOH . G 3 HOH A 7 116 4 HOH HOH . G 3 HOH A 8 117 5 HOH HOH . G 3 HOH A 9 118 6 HOH HOH . G 3 HOH A 10 119 7 HOH HOH . G 3 HOH A 11 120 8 HOH HOH . G 3 HOH A 12 121 9 HOH HOH . G 3 HOH A 13 122 10 HOH HOH . G 3 HOH A 14 123 11 HOH HOH . G 3 HOH A 15 124 12 HOH HOH . G 3 HOH A 16 125 13 HOH HOH . G 3 HOH A 17 126 14 HOH HOH . G 3 HOH A 18 127 15 HOH HOH . G 3 HOH A 19 128 16 HOH HOH . G 3 HOH A 20 129 17 HOH HOH . G 3 HOH A 21 130 18 HOH HOH . G 3 HOH A 22 131 19 HOH HOH . G 3 HOH A 23 132 20 HOH HOH . G 3 HOH A 24 133 21 HOH HOH . G 3 HOH A 25 134 22 HOH HOH . G 3 HOH A 26 135 23 HOH HOH . G 3 HOH A 27 136 24 HOH HOH . G 3 HOH A 28 137 25 HOH HOH . G 3 HOH A 29 138 26 HOH HOH . G 3 HOH A 30 139 27 HOH HOH . G 3 HOH A 31 140 28 HOH HOH . G 3 HOH A 32 141 29 HOH HOH . G 3 HOH A 33 142 30 HOH HOH . G 3 HOH A 34 143 31 HOH HOH . G 3 HOH A 35 144 32 HOH HOH . G 3 HOH A 36 145 33 HOH HOH . G 3 HOH A 37 146 34 HOH HOH . G 3 HOH A 38 147 35 HOH HOH . G 3 HOH A 39 148 36 HOH HOH . G 3 HOH A 40 149 37 HOH HOH . G 3 HOH A 41 150 38 HOH HOH . G 3 HOH A 42 151 39 HOH HOH . G 3 HOH A 43 152 40 HOH HOH . G 3 HOH A 44 153 42 HOH HOH . G 3 HOH A 45 154 43 HOH HOH . G 3 HOH A 46 155 44 HOH HOH . G 3 HOH A 47 156 45 HOH HOH . G 3 HOH A 48 157 46 HOH HOH . G 3 HOH A 49 158 47 HOH HOH . G 3 HOH A 50 159 48 HOH HOH . G 3 HOH A 51 160 49 HOH HOH . G 3 HOH A 52 161 50 HOH HOH . G 3 HOH A 53 162 51 HOH HOH . G 3 HOH A 54 163 52 HOH HOH . G 3 HOH A 55 164 53 HOH HOH . G 3 HOH A 56 165 54 HOH HOH . G 3 HOH A 57 166 55 HOH HOH . G 3 HOH A 58 167 56 HOH HOH . G 3 HOH A 59 168 57 HOH HOH . G 3 HOH A 60 169 60 HOH HOH . G 3 HOH A 61 170 61 HOH HOH . G 3 HOH A 62 171 62 HOH HOH . G 3 HOH A 63 172 63 HOH HOH . G 3 HOH A 64 173 64 HOH HOH . G 3 HOH A 65 174 65 HOH HOH . G 3 HOH A 66 175 66 HOH HOH . G 3 HOH A 67 176 67 HOH HOH . G 3 HOH A 68 177 68 HOH HOH . G 3 HOH A 69 178 69 HOH HOH . G 3 HOH A 70 179 71 HOH HOH . G 3 HOH A 71 180 72 HOH HOH . G 3 HOH A 72 181 73 HOH HOH . G 3 HOH A 73 182 74 HOH HOH . G 3 HOH A 74 183 75 HOH HOH . G 3 HOH A 75 184 76 HOH HOH . G 3 HOH A 76 185 77 HOH HOH . G 3 HOH A 77 186 78 HOH HOH . G 3 HOH A 78 187 80 HOH HOH . G 3 HOH A 79 188 81 HOH HOH . G 3 HOH A 80 189 82 HOH HOH . G 3 HOH A 81 190 83 HOH HOH . G 3 HOH A 82 191 85 HOH HOH . G 3 HOH A 83 192 87 HOH HOH . G 3 HOH A 84 193 89 HOH HOH . G 3 HOH A 85 194 90 HOH HOH . G 3 HOH A 86 195 92 HOH HOH . G 3 HOH A 87 196 93 HOH HOH . G 3 HOH A 88 197 94 HOH HOH . G 3 HOH A 89 198 95 HOH HOH . G 3 HOH A 90 199 96 HOH HOH . G 3 HOH A 91 200 97 HOH HOH . G 3 HOH A 92 201 101 HOH HOH . G 3 HOH A 93 202 102 HOH HOH . G 3 HOH A 94 203 103 HOH HOH . G 3 HOH A 95 204 104 HOH HOH . G 3 HOH A 96 205 105 HOH HOH . G 3 HOH A 97 206 108 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PO4 . . . F 2 17.872 3.805 -3.628 0.5 19.39 ? P PO4 109 A 1 HETATM 2 O O1 PO4 . . . F 2 17.39 3.387 -4.983 0.5 20.34 ? O1 PO4 109 A 1 HETATM 3 O O2 PO4 . . . F 2 19.338 4.114 -3.66 0.5 18.1 ? O2 PO4 109 A 1 HETATM 4 O O3 PO4 . . . F 2 17.538 2.681 -2.659 0.5 18.75 ? O3 PO4 109 A 1 HETATM 5 O O4 PO4 . . . F 2 17.289 5.13 -3.166 0.5 18.31 ? O4 PO4 109 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 5 #