data_3U04 # _model_server_result.job_id SRbtlQgCqYBQx68IXheTzA _model_server_result.datetime_utc '2024-10-19 17:21:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3u04 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":200}' # _entry.id 3U04 # _exptl.entry_id 3U04 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.17 _cell.angle_gamma 90 _cell.entry_id 3U04 _cell.length_a 83.89 _cell.length_b 33.02 _cell.length_c 68.14 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3U04 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 113 A CYS 111 1_555 B ZN ZN . A ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc2 A NE2 HIS 155 A HIS 153 1_555 B ZN ZN . A ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc3 A NE2 HIS 159 A HIS 157 1_555 B ZN ZN . A ZN 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc4 B ZN ZN . A ZN 200 1_555 E O4 BB2 . A BB2 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc5 B ZN ZN . A ZN 200 1_555 E O2 BB2 . A BB2 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.263 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3U04 _atom_sites.fract_transf_matrix[1][1] 0.01192 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000243 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.030285 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014679 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 200 200 ZN ZN . C 3 CL A 1 201 201 CL CL . D 3 CL A 1 202 202 CL CL . E 4 BB2 A 1 210 210 BB2 BB2 . F 5 HOH A 1 189 1 HOH HOH . F 5 HOH A 2 190 2 HOH HOH . F 5 HOH A 3 191 3 HOH HOH . F 5 HOH A 4 192 4 HOH HOH . F 5 HOH A 5 193 5 HOH HOH . F 5 HOH A 6 194 6 HOH HOH . F 5 HOH A 7 195 7 HOH HOH . F 5 HOH A 8 196 8 HOH HOH . F 5 HOH A 9 197 9 HOH HOH . F 5 HOH A 10 198 10 HOH HOH . F 5 HOH A 11 199 11 HOH HOH . F 5 HOH A 12 203 12 HOH HOH . F 5 HOH A 13 204 13 HOH HOH . F 5 HOH A 14 205 14 HOH HOH . F 5 HOH A 15 206 15 HOH HOH . F 5 HOH A 16 207 16 HOH HOH . F 5 HOH A 17 208 17 HOH HOH . F 5 HOH A 18 209 18 HOH HOH . F 5 HOH A 19 211 19 HOH HOH . F 5 HOH A 20 212 20 HOH HOH . F 5 HOH A 21 213 21 HOH HOH . F 5 HOH A 22 214 22 HOH HOH . F 5 HOH A 23 215 23 HOH HOH . F 5 HOH A 24 216 24 HOH HOH . F 5 HOH A 25 217 25 HOH HOH . F 5 HOH A 26 218 26 HOH HOH . F 5 HOH A 27 219 27 HOH HOH . F 5 HOH A 28 220 28 HOH HOH . F 5 HOH A 29 221 29 HOH HOH . F 5 HOH A 30 222 30 HOH HOH . F 5 HOH A 31 223 31 HOH HOH . F 5 HOH A 32 224 32 HOH HOH . F 5 HOH A 33 225 33 HOH HOH . F 5 HOH A 34 226 34 HOH HOH . F 5 HOH A 35 227 35 HOH HOH . F 5 HOH A 36 228 36 HOH HOH . F 5 HOH A 37 229 37 HOH HOH . F 5 HOH A 38 230 38 HOH HOH . F 5 HOH A 39 231 39 HOH HOH . F 5 HOH A 40 232 40 HOH HOH . F 5 HOH A 41 233 41 HOH HOH . F 5 HOH A 42 234 42 HOH HOH . F 5 HOH A 43 235 43 HOH HOH . F 5 HOH A 44 236 44 HOH HOH . F 5 HOH A 45 237 45 HOH HOH . F 5 HOH A 46 238 46 HOH HOH . F 5 HOH A 47 239 47 HOH HOH . F 5 HOH A 48 240 48 HOH HOH . F 5 HOH A 49 241 49 HOH HOH . F 5 HOH A 50 242 50 HOH HOH . F 5 HOH A 51 243 51 HOH HOH . F 5 HOH A 52 244 52 HOH HOH . F 5 HOH A 53 245 53 HOH HOH . F 5 HOH A 54 246 54 HOH HOH . F 5 HOH A 55 247 55 HOH HOH . F 5 HOH A 56 248 56 HOH HOH . F 5 HOH A 57 249 57 HOH HOH . F 5 HOH A 58 250 58 HOH HOH . F 5 HOH A 59 251 59 HOH HOH . F 5 HOH A 60 252 60 HOH HOH . F 5 HOH A 61 253 61 HOH HOH . F 5 HOH A 62 254 62 HOH HOH . F 5 HOH A 63 255 63 HOH HOH . F 5 HOH A 64 256 64 HOH HOH . F 5 HOH A 65 257 65 HOH HOH . F 5 HOH A 66 258 66 HOH HOH . F 5 HOH A 67 259 67 HOH HOH . F 5 HOH A 68 260 68 HOH HOH . F 5 HOH A 69 261 69 HOH HOH . F 5 HOH A 70 262 70 HOH HOH . F 5 HOH A 71 263 71 HOH HOH . F 5 HOH A 72 264 72 HOH HOH . F 5 HOH A 73 265 73 HOH HOH . F 5 HOH A 74 266 74 HOH HOH . F 5 HOH A 75 267 75 HOH HOH . F 5 HOH A 76 268 76 HOH HOH . F 5 HOH A 77 269 77 HOH HOH . F 5 HOH A 78 270 78 HOH HOH . F 5 HOH A 79 271 79 HOH HOH . F 5 HOH A 80 272 80 HOH HOH . F 5 HOH A 81 273 81 HOH HOH . F 5 HOH A 82 274 82 HOH HOH . F 5 HOH A 83 275 83 HOH HOH . F 5 HOH A 84 276 84 HOH HOH . F 5 HOH A 85 277 85 HOH HOH . F 5 HOH A 86 278 86 HOH HOH . F 5 HOH A 87 279 87 HOH HOH . F 5 HOH A 88 280 88 HOH HOH . F 5 HOH A 89 281 89 HOH HOH . F 5 HOH A 90 282 90 HOH HOH . F 5 HOH A 91 283 91 HOH HOH . F 5 HOH A 92 284 92 HOH HOH . F 5 HOH A 93 285 93 HOH HOH . F 5 HOH A 94 286 94 HOH HOH . F 5 HOH A 95 287 95 HOH HOH . F 5 HOH A 96 288 96 HOH HOH . F 5 HOH A 97 289 97 HOH HOH . F 5 HOH A 98 290 98 HOH HOH . F 5 HOH A 99 291 99 HOH HOH . F 5 HOH A 100 292 100 HOH HOH . F 5 HOH A 101 293 101 HOH HOH . F 5 HOH A 102 294 102 HOH HOH . F 5 HOH A 103 295 103 HOH HOH . F 5 HOH A 104 296 104 HOH HOH . F 5 HOH A 105 297 105 HOH HOH . F 5 HOH A 106 298 106 HOH HOH . F 5 HOH A 107 299 107 HOH HOH . F 5 HOH A 108 300 108 HOH HOH . F 5 HOH A 109 301 109 HOH HOH . F 5 HOH A 110 302 110 HOH HOH . F 5 HOH A 111 303 111 HOH HOH . F 5 HOH A 112 304 112 HOH HOH . F 5 HOH A 113 305 113 HOH HOH . F 5 HOH A 114 306 114 HOH HOH . F 5 HOH A 115 307 115 HOH HOH . F 5 HOH A 116 308 116 HOH HOH . F 5 HOH A 117 309 117 HOH HOH . F 5 HOH A 118 310 118 HOH HOH . F 5 HOH A 119 311 119 HOH HOH . F 5 HOH A 120 312 120 HOH HOH . F 5 HOH A 121 313 121 HOH HOH . F 5 HOH A 122 314 122 HOH HOH . F 5 HOH A 123 315 123 HOH HOH . F 5 HOH A 124 316 124 HOH HOH . F 5 HOH A 125 317 125 HOH HOH . F 5 HOH A 126 318 126 HOH HOH . F 5 HOH A 127 319 127 HOH HOH . F 5 HOH A 128 320 128 HOH HOH . F 5 HOH A 129 321 129 HOH HOH . F 5 HOH A 130 322 130 HOH HOH . F 5 HOH A 131 323 131 HOH HOH . F 5 HOH A 132 324 132 HOH HOH . F 5 HOH A 133 325 133 HOH HOH . F 5 HOH A 134 326 134 HOH HOH . F 5 HOH A 135 327 135 HOH HOH . F 5 HOH A 136 328 136 HOH HOH . F 5 HOH A 137 329 137 HOH HOH . F 5 HOH A 138 330 138 HOH HOH . F 5 HOH A 139 331 139 HOH HOH . F 5 HOH A 140 332 140 HOH HOH . F 5 HOH A 141 333 141 HOH HOH . F 5 HOH A 142 334 142 HOH HOH . F 5 HOH A 143 335 143 HOH HOH . F 5 HOH A 144 336 144 HOH HOH . F 5 HOH A 145 337 145 HOH HOH . F 5 HOH A 146 338 146 HOH HOH . F 5 HOH A 147 339 147 HOH HOH . F 5 HOH A 148 340 148 HOH HOH . F 5 HOH A 149 341 149 HOH HOH . F 5 HOH A 150 342 150 HOH HOH . F 5 HOH A 151 343 151 HOH HOH . F 5 HOH A 152 344 152 HOH HOH . F 5 HOH A 153 345 153 HOH HOH . F 5 HOH A 154 346 154 HOH HOH . F 5 HOH A 155 347 155 HOH HOH . F 5 HOH A 156 348 156 HOH HOH . F 5 HOH A 157 349 157 HOH HOH . F 5 HOH A 158 350 158 HOH HOH . F 5 HOH A 159 351 159 HOH HOH . F 5 HOH A 160 352 160 HOH HOH . F 5 HOH A 161 353 161 HOH HOH . F 5 HOH A 162 354 162 HOH HOH . F 5 HOH A 163 355 163 HOH HOH . F 5 HOH A 164 356 164 HOH HOH . F 5 HOH A 165 357 165 HOH HOH . F 5 HOH A 166 358 166 HOH HOH . F 5 HOH A 167 359 167 HOH HOH . F 5 HOH A 168 360 168 HOH HOH . F 5 HOH A 169 361 169 HOH HOH . F 5 HOH A 170 362 170 HOH HOH . F 5 HOH A 171 363 171 HOH HOH . F 5 HOH A 172 364 172 HOH HOH . F 5 HOH A 173 365 173 HOH HOH . F 5 HOH A 174 366 174 HOH HOH . F 5 HOH A 175 367 175 HOH HOH . F 5 HOH A 176 368 176 HOH HOH . F 5 HOH A 177 369 177 HOH HOH . F 5 HOH A 178 370 178 HOH HOH . F 5 HOH A 179 371 179 HOH HOH . F 5 HOH A 180 372 180 HOH HOH . F 5 HOH A 181 373 181 HOH HOH . F 5 HOH A 182 374 182 HOH HOH . F 5 HOH A 183 375 183 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x -11.012 _atom_site.Cartn_y 7.539 _atom_site.Cartn_z 11.45 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 16.96 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 200 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 79 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #