data_3U05 # _model_server_result.job_id HQbR2yHxtpSiZCwAcqUxAw _model_server_result.datetime_utc '2024-11-22 05:18:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3u05 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":101}' # _entry.id 3U05 # _exptl.entry_id 3U05 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3U05 _cell.length_a 24.1 _cell.length_b 39.88 _cell.length_c 65.79 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3U05 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C MG MG . A MG 101 1_555 E O HOH . A HOH 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc2 C MG MG . A MG 101 1_555 E O HOH . A HOH 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc3 C MG MG . A MG 101 1_555 E O HOH . A HOH 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc4 C MG MG . A MG 101 1_555 E O HOH . A HOH 232 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? hydrog WATSON-CRICK hydrog1 A N3 DC 1 A DC 1 1_555 B N1 DG 12 B DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 A N4 DC 1 A DC 1 1_555 B O6 DG 12 B DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 A O2 DC 1 A DC 1 1_555 B N2 DG 12 B DG 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 A N1 DG 2 A DG 2 1_555 B N3 DC 11 B DC 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 A N2 DG 2 A DG 2 1_555 B O2 DC 11 B DC 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 A O6 DG 2 A DG 2 1_555 B N4 DC 11 B DC 23 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 A N3 DC 3 A DC 3 1_555 B N1 DG 10 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 A N4 DC 3 A DC 3 1_555 B O6 DG 10 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 A O2 DC 3 A DC 3 1_555 B N2 DG 10 B DG 22 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 A N1 DG 4 A DG 4 1_555 B N3 DC 9 B DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 A N2 DG 4 A DG 4 1_555 B O2 DC 9 B DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 A O6 DG 4 A DG 4 1_555 B N4 DC 9 B DC 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 A N1 DA 5 A DA 5 1_555 B N3 DT 8 B DT 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 A N6 DA 5 A DA 5 1_555 B O4 DT 8 B DT 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 A N1 DA 6 A DA 6 1_555 B N3 DT 7 B DT 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 A N6 DA 6 A DA 6 1_555 B O4 DT 7 B DT 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 A N3 DT 7 A DT 7 1_555 B N1 DA 6 B DA 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 A O4 DT 7 A DT 7 1_555 B N6 DA 6 B DA 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 A N3 DT 8 A DT 8 1_555 B N1 DA 5 B DA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 A O4 DT 8 A DT 8 1_555 B N6 DA 5 B DA 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 A N3 DC 9 A DC 9 1_555 B N1 DG 4 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 A N4 DC 9 A DC 9 1_555 B O6 DG 4 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 A O2 DC 9 A DC 9 1_555 B N2 DG 4 B DG 16 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 A N1 DG 10 A DG 10 1_555 B N3 DC 3 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 A N2 DG 10 A DG 10 1_555 B O2 DC 3 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 A O6 DG 10 A DG 10 1_555 B N4 DC 3 B DC 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 A N3 DC 11 A DC 11 1_555 B N1 DG 2 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 A N4 DC 11 A DC 11 1_555 B O6 DG 2 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 A O2 DC 11 A DC 11 1_555 B N2 DG 2 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 A N1 DG 12 A DG 12 1_555 B N3 DC 1 B DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 A N2 DG 12 A DG 12 1_555 B O2 DC 1 B DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 A O6 DG 12 A DG 12 1_555 B N4 DC 1 B DC 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3U05 _atom_sites.fract_transf_matrix[1][1] 0.041494 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025075 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0152 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 101 13 MG MG . D 3 804 B 1 101 1 804 804 . E 4 HOH A 1 201 14 HOH HOH . E 4 HOH A 2 202 16 HOH HOH . E 4 HOH A 3 203 17 HOH HOH . E 4 HOH A 4 204 18 HOH HOH . E 4 HOH A 5 205 19 HOH HOH . E 4 HOH A 6 206 20 HOH HOH . E 4 HOH A 7 207 21 HOH HOH . E 4 HOH A 8 208 22 HOH HOH . E 4 HOH A 9 209 23 HOH HOH . E 4 HOH A 10 210 24 HOH HOH . E 4 HOH A 11 211 25 HOH HOH . E 4 HOH A 12 212 26 HOH HOH . E 4 HOH A 13 213 27 HOH HOH . E 4 HOH A 14 214 28 HOH HOH . E 4 HOH A 15 215 29 HOH HOH . E 4 HOH A 16 216 30 HOH HOH . E 4 HOH A 17 217 31 HOH HOH . E 4 HOH A 18 218 32 HOH HOH . E 4 HOH A 19 219 33 HOH HOH . E 4 HOH A 20 220 34 HOH HOH . E 4 HOH A 21 221 35 HOH HOH . E 4 HOH A 22 222 36 HOH HOH . E 4 HOH A 23 223 37 HOH HOH . E 4 HOH A 24 224 38 HOH HOH . E 4 HOH A 25 225 39 HOH HOH . E 4 HOH A 26 226 40 HOH HOH . E 4 HOH A 27 227 41 HOH HOH . E 4 HOH A 28 228 42 HOH HOH . E 4 HOH A 29 229 43 HOH HOH . E 4 HOH A 30 230 44 HOH HOH . E 4 HOH A 31 231 45 HOH HOH . E 4 HOH A 32 232 46 HOH HOH . E 4 HOH A 33 233 47 HOH HOH . E 4 HOH A 34 234 48 HOH HOH . E 4 HOH A 35 235 49 HOH HOH . E 4 HOH A 36 236 50 HOH HOH . E 4 HOH A 37 237 51 HOH HOH . E 4 HOH A 38 238 52 HOH HOH . E 4 HOH A 39 239 53 HOH HOH . E 4 HOH A 40 240 54 HOH HOH . E 4 HOH A 41 241 55 HOH HOH . E 4 HOH A 42 242 56 HOH HOH . E 4 HOH A 43 243 57 HOH HOH . E 4 HOH A 44 244 58 HOH HOH . E 4 HOH A 45 245 59 HOH HOH . E 4 HOH A 46 246 61 HOH HOH . E 4 HOH A 47 247 62 HOH HOH . E 4 HOH A 48 248 63 HOH HOH . E 4 HOH A 49 249 64 HOH HOH . E 4 HOH A 50 250 65 HOH HOH . E 4 HOH A 51 251 69 HOH HOH . E 4 HOH A 52 252 71 HOH HOH . E 4 HOH A 53 253 72 HOH HOH . E 4 HOH A 54 254 73 HOH HOH . E 4 HOH A 55 255 74 HOH HOH . E 4 HOH A 56 256 75 HOH HOH . E 4 HOH A 57 257 76 HOH HOH . E 4 HOH A 58 258 77 HOH HOH . E 4 HOH A 59 259 78 HOH HOH . E 4 HOH A 60 260 34 HOH HOH . E 4 HOH A 61 261 71 HOH HOH . E 4 HOH A 62 262 75 HOH HOH . E 4 HOH A 63 263 2 HOH HOH . E 4 HOH A 64 264 3 HOH HOH . E 4 HOH A 65 265 4 HOH HOH . E 4 HOH A 66 266 8 HOH HOH . E 4 HOH A 67 267 21 HOH HOH . E 4 HOH A 68 268 22 HOH HOH . E 4 HOH A 69 269 24 HOH HOH . E 4 HOH A 70 270 25 HOH HOH . E 4 HOH A 71 271 28 HOH HOH . E 4 HOH A 72 272 60 HOH HOH . F 4 HOH B 1 201 66 HOH HOH . F 4 HOH B 2 202 67 HOH HOH . F 4 HOH B 3 203 68 HOH HOH . F 4 HOH B 4 204 2 HOH HOH . F 4 HOH B 5 205 3 HOH HOH . F 4 HOH B 6 206 4 HOH HOH . F 4 HOH B 7 207 5 HOH HOH . F 4 HOH B 8 208 6 HOH HOH . F 4 HOH B 9 209 7 HOH HOH . F 4 HOH B 10 210 8 HOH HOH . F 4 HOH B 11 211 9 HOH HOH . F 4 HOH B 12 212 10 HOH HOH . F 4 HOH B 13 213 11 HOH HOH . F 4 HOH B 14 214 12 HOH HOH . F 4 HOH B 15 215 25 HOH HOH . F 4 HOH B 16 216 26 HOH HOH . F 4 HOH B 17 217 27 HOH HOH . F 4 HOH B 18 218 28 HOH HOH . F 4 HOH B 19 219 29 HOH HOH . F 4 HOH B 20 220 30 HOH HOH . F 4 HOH B 21 221 31 HOH HOH . F 4 HOH B 22 222 32 HOH HOH . F 4 HOH B 23 223 33 HOH HOH . F 4 HOH B 24 224 35 HOH HOH . F 4 HOH B 25 225 36 HOH HOH . F 4 HOH B 26 226 37 HOH HOH . F 4 HOH B 27 227 38 HOH HOH . F 4 HOH B 28 228 39 HOH HOH . F 4 HOH B 29 229 40 HOH HOH . F 4 HOH B 30 230 41 HOH HOH . F 4 HOH B 31 231 42 HOH HOH . F 4 HOH B 32 232 43 HOH HOH . F 4 HOH B 33 233 44 HOH HOH . F 4 HOH B 34 234 45 HOH HOH . F 4 HOH B 35 235 46 HOH HOH . F 4 HOH B 36 236 47 HOH HOH . F 4 HOH B 37 237 48 HOH HOH . F 4 HOH B 38 238 49 HOH HOH . F 4 HOH B 39 239 50 HOH HOH . F 4 HOH B 40 240 51 HOH HOH . F 4 HOH B 41 241 52 HOH HOH . F 4 HOH B 42 242 53 HOH HOH . F 4 HOH B 43 243 54 HOH HOH . F 4 HOH B 44 244 55 HOH HOH . F 4 HOH B 45 245 56 HOH HOH . F 4 HOH B 46 246 57 HOH HOH . F 4 HOH B 47 247 58 HOH HOH . F 4 HOH B 48 248 59 HOH HOH . F 4 HOH B 49 249 60 HOH HOH . F 4 HOH B 50 250 61 HOH HOH . F 4 HOH B 51 251 62 HOH HOH . F 4 HOH B 52 252 63 HOH HOH . F 4 HOH B 53 253 64 HOH HOH . F 4 HOH B 54 254 65 HOH HOH . F 4 HOH B 55 255 66 HOH HOH . F 4 HOH B 56 256 67 HOH HOH . F 4 HOH B 57 257 68 HOH HOH . F 4 HOH B 58 258 69 HOH HOH . F 4 HOH B 59 259 70 HOH HOH . F 4 HOH B 60 260 72 HOH HOH . F 4 HOH B 61 261 73 HOH HOH . F 4 HOH B 62 262 1 HOH HOH . F 4 HOH B 63 263 5 HOH HOH . F 4 HOH B 64 264 6 HOH HOH . F 4 HOH B 65 265 7 HOH HOH . F 4 HOH B 66 266 9 HOH HOH . F 4 HOH B 67 267 10 HOH HOH . F 4 HOH B 68 268 11 HOH HOH . F 4 HOH B 69 269 12 HOH HOH . F 4 HOH B 70 270 13 HOH HOH . F 4 HOH B 71 271 14 HOH HOH . F 4 HOH B 72 272 15 HOH HOH . F 4 HOH B 73 273 16 HOH HOH . F 4 HOH B 74 274 17 HOH HOH . F 4 HOH B 75 275 18 HOH HOH . F 4 HOH B 76 276 19 HOH HOH . F 4 HOH B 77 277 20 HOH HOH . F 4 HOH B 78 278 23 HOH HOH . F 4 HOH B 79 279 26 HOH HOH . F 4 HOH B 80 280 27 HOH HOH . F 4 HOH B 81 281 29 HOH HOH . F 4 HOH B 82 282 30 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 10.354 _atom_site.Cartn_y 8.533 _atom_site.Cartn_z 12.773 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 10.39 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 101 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 101 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #