data_3U06
#
_model_server_result.job_id            U37KbPLfw7zodUxcXa3HBA 
_model_server_result.datetime_utc      '2024-11-15 05:42:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3u06 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":2}' 
#
_entry.id    3U06 
#
_exptl.entry_id    3U06 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          98.91 
_cell.angle_gamma         90 
_cell.entry_id            3U06 
_cell.length_a            160.539 
_cell.length_b            67.094 
_cell.length_c            94.369 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3U06 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 E N N 
? 4 F N N 
? 4 G N N 
? 4 H N N 
? 4 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 C O3B ADP . A ADP 1 1_555 D MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? 
metalc ? metalc2 A OG1 THR 153 A THR 441 1_555 D MG MG . A MG 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.135 ? 
metalc ? metalc3 D MG MG . A MG 701 1_555 K O HOH . A HOH 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? 
metalc ? metalc4 D MG MG . A MG 701 1_555 K O HOH . A HOH 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? 
metalc ? metalc5 D MG MG . A MG 701 1_555 K O HOH . A HOH 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? 
metalc ? metalc6 D MG MG . A MG 701 1_555 K O HOH . A HOH 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 173 n n 
C1 C2 GOL sing 174 n n 
C1 H11 GOL sing 175 n n 
C1 H12 GOL sing 176 n n 
O1 HO1 GOL sing 177 n n 
C2 O2 GOL sing 178 n n 
C2 C3 GOL sing 179 n n 
C2 H2 GOL sing 180 n n 
O2 HO2 GOL sing 181 n n 
C3 O3 GOL sing 182 n n 
C3 H31 GOL sing 183 n n 
C3 H32 GOL sing 184 n n 
O3 HO3 GOL sing 185 n n 
#
_atom_sites.entry_id                     3U06 
_atom_sites.fract_transf_matrix[1][1]    0.006229 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000977 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014904 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010726 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ADP A 1 1 1 ADP ADP . 
D 3 MG A 1 701 1 MG MG . 
E 4 GOL A 1 702 1 GOL GOL . 
F 4 GOL A 1 2 2 GOL GOL . 
G 4 GOL A 1 3 3 GOL GOL . 
H 4 GOL A 1 4 4 GOL GOL . 
I 2 ADP B 1 1 1 ADP ADP . 
J 4 GOL B 1 5 5 GOL GOL . 
K 5 HOH A 1 5 5 HOH HOH . 
K 5 HOH A 2 6 6 HOH HOH . 
K 5 HOH A 3 7 7 HOH HOH . 
K 5 HOH A 4 9 9 HOH HOH . 
K 5 HOH A 5 14 14 HOH HOH . 
K 5 HOH A 6 15 15 HOH HOH . 
K 5 HOH A 7 18 18 HOH HOH . 
K 5 HOH A 8 19 19 HOH HOH . 
K 5 HOH A 9 20 20 HOH HOH . 
K 5 HOH A 10 21 21 HOH HOH . 
K 5 HOH A 11 22 22 HOH HOH . 
K 5 HOH A 12 24 24 HOH HOH . 
K 5 HOH A 13 25 25 HOH HOH . 
K 5 HOH A 14 26 26 HOH HOH . 
K 5 HOH A 15 28 28 HOH HOH . 
K 5 HOH A 16 30 30 HOH HOH . 
K 5 HOH A 17 31 31 HOH HOH . 
K 5 HOH A 18 34 34 HOH HOH . 
K 5 HOH A 19 35 35 HOH HOH . 
K 5 HOH A 20 36 36 HOH HOH . 
K 5 HOH A 21 37 37 HOH HOH . 
K 5 HOH A 22 38 38 HOH HOH . 
K 5 HOH A 23 39 39 HOH HOH . 
K 5 HOH A 24 40 40 HOH HOH . 
K 5 HOH A 25 41 41 HOH HOH . 
K 5 HOH A 26 42 42 HOH HOH . 
K 5 HOH A 27 44 44 HOH HOH . 
K 5 HOH A 28 45 45 HOH HOH . 
K 5 HOH A 29 46 46 HOH HOH . 
K 5 HOH A 30 48 48 HOH HOH . 
K 5 HOH A 31 49 49 HOH HOH . 
K 5 HOH A 32 51 51 HOH HOH . 
K 5 HOH A 33 52 52 HOH HOH . 
K 5 HOH A 34 53 53 HOH HOH . 
K 5 HOH A 35 54 54 HOH HOH . 
K 5 HOH A 36 58 58 HOH HOH . 
K 5 HOH A 37 60 60 HOH HOH . 
K 5 HOH A 38 61 61 HOH HOH . 
K 5 HOH A 39 62 62 HOH HOH . 
K 5 HOH A 40 63 63 HOH HOH . 
K 5 HOH A 41 64 64 HOH HOH . 
K 5 HOH A 42 65 65 HOH HOH . 
K 5 HOH A 43 66 66 HOH HOH . 
K 5 HOH A 44 67 67 HOH HOH . 
K 5 HOH A 45 68 68 HOH HOH . 
K 5 HOH A 46 69 69 HOH HOH . 
K 5 HOH A 47 70 70 HOH HOH . 
K 5 HOH A 48 71 71 HOH HOH . 
K 5 HOH A 49 72 72 HOH HOH . 
K 5 HOH A 50 73 73 HOH HOH . 
K 5 HOH A 51 75 75 HOH HOH . 
K 5 HOH A 52 77 77 HOH HOH . 
K 5 HOH A 53 78 78 HOH HOH . 
K 5 HOH A 54 79 79 HOH HOH . 
K 5 HOH A 55 82 82 HOH HOH . 
K 5 HOH A 56 83 83 HOH HOH . 
K 5 HOH A 57 84 84 HOH HOH . 
K 5 HOH A 58 85 85 HOH HOH . 
K 5 HOH A 59 86 86 HOH HOH . 
K 5 HOH A 60 88 88 HOH HOH . 
K 5 HOH A 61 89 89 HOH HOH . 
K 5 HOH A 62 91 91 HOH HOH . 
K 5 HOH A 63 92 92 HOH HOH . 
K 5 HOH A 64 94 94 HOH HOH . 
K 5 HOH A 65 95 95 HOH HOH . 
K 5 HOH A 66 96 96 HOH HOH . 
K 5 HOH A 67 97 97 HOH HOH . 
K 5 HOH A 68 98 98 HOH HOH . 
K 5 HOH A 69 99 99 HOH HOH . 
K 5 HOH A 70 101 101 HOH HOH . 
K 5 HOH A 71 103 103 HOH HOH . 
K 5 HOH A 72 104 104 HOH HOH . 
K 5 HOH A 73 105 105 HOH HOH . 
K 5 HOH A 74 106 106 HOH HOH . 
K 5 HOH A 75 107 107 HOH HOH . 
K 5 HOH A 76 108 108 HOH HOH . 
K 5 HOH A 77 109 109 HOH HOH . 
K 5 HOH A 78 110 110 HOH HOH . 
K 5 HOH A 79 111 111 HOH HOH . 
K 5 HOH A 80 112 112 HOH HOH . 
K 5 HOH A 81 113 113 HOH HOH . 
K 5 HOH A 82 114 114 HOH HOH . 
K 5 HOH A 83 120 120 HOH HOH . 
K 5 HOH A 84 122 122 HOH HOH . 
K 5 HOH A 85 703 1 HOH HOH . 
K 5 HOH A 86 704 2 HOH HOH . 
K 5 HOH A 87 705 3 HOH HOH . 
K 5 HOH A 88 706 4 HOH HOH . 
L 5 HOH B 1 8 8 HOH HOH . 
L 5 HOH B 2 10 10 HOH HOH . 
L 5 HOH B 3 11 11 HOH HOH . 
L 5 HOH B 4 12 12 HOH HOH . 
L 5 HOH B 5 13 13 HOH HOH . 
L 5 HOH B 6 16 16 HOH HOH . 
L 5 HOH B 7 17 17 HOH HOH . 
L 5 HOH B 8 23 23 HOH HOH . 
L 5 HOH B 9 27 27 HOH HOH . 
L 5 HOH B 10 29 29 HOH HOH . 
L 5 HOH B 11 32 32 HOH HOH . 
L 5 HOH B 12 33 33 HOH HOH . 
L 5 HOH B 13 43 43 HOH HOH . 
L 5 HOH B 14 47 47 HOH HOH . 
L 5 HOH B 15 50 50 HOH HOH . 
L 5 HOH B 16 55 55 HOH HOH . 
L 5 HOH B 17 56 56 HOH HOH . 
L 5 HOH B 18 57 57 HOH HOH . 
L 5 HOH B 19 59 59 HOH HOH . 
L 5 HOH B 20 74 74 HOH HOH . 
L 5 HOH B 21 76 76 HOH HOH . 
L 5 HOH B 22 80 80 HOH HOH . 
L 5 HOH B 23 81 81 HOH HOH . 
L 5 HOH B 24 87 87 HOH HOH . 
L 5 HOH B 25 90 90 HOH HOH . 
L 5 HOH B 26 93 93 HOH HOH . 
L 5 HOH B 27 100 100 HOH HOH . 
L 5 HOH B 28 102 102 HOH HOH . 
L 5 HOH B 29 115 115 HOH HOH . 
L 5 HOH B 30 116 116 HOH HOH . 
L 5 HOH B 31 117 117 HOH HOH . 
L 5 HOH B 32 118 118 HOH HOH . 
L 5 HOH B 33 119 119 HOH HOH . 
L 5 HOH B 34 121 121 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . F 4 2.945 -14.674 16.263 1 82.08 ? C1 GOL 2 A 1 
HETATM 2 O O1 GOL . . . F 4 3.876 -13.705 15.838 1 82.89 ? O1 GOL 2 A 1 
HETATM 3 C C2 GOL . . . F 4 2.812 -14.633 17.782 1 81.71 ? C2 GOL 2 A 1 
HETATM 4 O O2 GOL . . . F 4 3.914 -15.241 18.409 1 81.97 ? O2 GOL 2 A 1 
HETATM 5 C C3 GOL . . . F 4 1.546 -15.358 18.214 1 81.14 ? C3 GOL 2 A 1 
HETATM 6 O O3 GOL . . . F 4 1.616 -15.637 19.597 1 80 ? O3 GOL 2 A 1 
HETATM 7 H H11 GOL . . . F 4 3.276 -15.664 15.95 1 98.5 ? H11 GOL 2 A 1 
HETATM 8 H H12 GOL . . . F 4 1.975 -14.48 15.804 1 98.5 ? H12 GOL 2 A 1 
HETATM 9 H HO1 GOL . . . F 4 4.006 -13.78 14.869 1 99.47 ? HO1 GOL 2 A 1 
HETATM 10 H H2 GOL . . . F 4 2.739 -13.591 18.095 1 98.05 ? H2 GOL 2 A 1 
HETATM 11 H HO2 GOL . . . F 4 3.804 -15.19 19.382 1 98.37 ? HO2 GOL 2 A 1 
HETATM 12 H H31 GOL . . . F 4 1.444 -16.287 17.655 1 97.36 ? H31 GOL 2 A 1 
HETATM 13 H H32 GOL . . . F 4 0.675 -14.736 18.006 1 97.36 ? H32 GOL 2 A 1 
HETATM 14 H HO3 GOL . . . F 4 2.267 -16.352 19.754 1 96 ? HO3 GOL 2 A 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           256 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           14 
#