data_3U0P # _model_server_result.job_id JvcoUx4KHK9-YmEZkP4WrA _model_server_result.datetime_utc '2025-03-02 23:50:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3u0p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"U","auth_seq_id":305}' # _entry.id 3U0P # _exptl.entry_id 3U0P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 11 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3U0P _cell.length_a 108.609 _cell.length_b 127.189 _cell.length_c 332.641 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3U0P _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,G,J,K,L,M,N,O,P,Q,R,S,GA,HA 1 1 C,D,H,T,U,V,W,X,Y,Z,AA,BA,CA,DA,IA,JA 2 1 E,F,I,EA,FA,KA,LA 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 8 L N N ? 8 M N N ? 8 N N N ? 8 U N N ? 8 V N N ? 8 W N N ? 8 Y N N ? 8 Z N N ? 8 AA N N ? 8 CA N N ? 8 FA N N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 3 oligosaccharide 4 oligosaccharide 5 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 3 2 1 FUC NAG C1 O1 . O3 HO3 . sing 2 ? 3 3 1 NAG NAG C1 O1 . O4 HO4 . sing 3 ? 3 4 1 FUC NAG C1 O1 . O6 HO6 . sing 4 ? 4 2 1 FUC NAG C1 O1 . O3 HO3 . sing 5 ? 4 3 1 FUC NAG C1 O1 . O6 HO6 . sing 6 ? 5 2 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 3 n G NAG 1 G 1 NAG A 1000 NAG 3 n G FUC 2 G 2 FUC A 1001 FUC 3 n G NAG 3 G 3 NAG A 1002 NAG 3 n G FUC 4 G 4 FUC A 1003 FUC 4 n H NAG 1 H 1 NAG C 1000 NAG 4 n H FUC 2 H 2 FUC C 1002 FUC 4 n H FUC 3 H 3 FUC C 1001 FUC 5 n I NAG 1 I 1 NAG E 1000 NAG 5 n I FUC 2 I 2 FUC E 1001 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 103 A CYS 102 1_555 A SG CYS 167 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf2 A SG CYS 207 A CYS 206 1_555 A SG CYS 262 A CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 B SG CYS 28 B CYS 25 1_555 B SG CYS 83 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 C SG CYS 103 C CYS 102 1_555 C SG CYS 167 C CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf5 C SG CYS 207 C CYS 206 1_555 C SG CYS 262 C CYS 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf6 D SG CYS 28 D CYS 25 1_555 D SG CYS 83 D CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 E SG CYS 103 E CYS 102 1_555 E SG CYS 167 E CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf8 F SG CYS 28 F CYS 25 1_555 F SG CYS 83 F CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A ND2 ASN 21 A ASN 20 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale2 C ND2 ASN 21 C ASN 20 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale3 E ND2 ASN 21 E ASN 20 1_555 I C1 NAG . I NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale4 G O3 NAG . G NAG 1 1_555 G C1 FUC . G FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale5 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? covale ? covale6 G O6 NAG . G NAG 1 1_555 G C1 FUC . G FUC 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale7 H O3 NAG . H NAG 1 1_555 H C1 FUC . H FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? covale ? covale8 H O6 NAG . H NAG 1 1_555 H C1 FUC . H FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.453 ? covale ? covale9 I O6 NAG . I NAG 1 1_555 I C1 FUC . I FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 475 n n S O2 SO4 doub 476 n n S O3 SO4 sing 477 n n S O4 SO4 sing 478 n n # _atom_sites.entry_id 3U0P _atom_sites.fract_transf_matrix[1][1] 0.009207 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007862 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003006 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code J 6 LSC A 1 305 2000 LSC LSC . K 7 HEX A 1 306 2003 HEX HEX . L 8 SO4 A 1 307 3000 SO4 SO4 . M 8 SO4 A 1 308 3001 SO4 SO4 . N 8 SO4 A 1 309 3002 SO4 SO4 . O 9 GOL A 1 310 3003 GOL GOL . P 9 GOL A 1 311 3004 GOL GOL . Q 10 UND A 1 312 2001 UND UND . R 9 GOL B 1 3000 3000 GOL GOL . S 9 GOL B 1 3001 3001 GOL GOL . T 6 LSC C 1 304 2000 LSC LSC . U 8 SO4 C 1 305 3000 SO4 SO4 . V 8 SO4 C 1 306 3001 SO4 SO4 . W 8 SO4 C 1 307 3002 SO4 SO4 . X 9 GOL C 1 308 3003 GOL GOL . Y 8 SO4 C 1 309 284 SO4 SO4 . Z 8 SO4 D 1 101 3000 SO4 SO4 . AA 8 SO4 D 1 102 3001 SO4 SO4 . BA 9 GOL D 1 103 3003 GOL GOL . CA 8 SO4 D 1 104 3004 SO4 SO4 . DA 9 GOL D 1 105 3005 GOL GOL . EA 11 NBU E 1 303 284 NBU NBU . FA 8 SO4 F 1 3000 3000 SO4 SO4 . GA 12 HOH A 1 401 286 HOH HOH . GA 12 HOH A 2 402 287 HOH HOH . GA 12 HOH A 3 403 288 HOH HOH . GA 12 HOH A 4 404 289 HOH HOH . GA 12 HOH A 5 405 290 HOH HOH . GA 12 HOH A 6 406 291 HOH HOH . GA 12 HOH A 7 407 292 HOH HOH . GA 12 HOH A 8 408 293 HOH HOH . GA 12 HOH A 9 409 294 HOH HOH . GA 12 HOH A 10 410 295 HOH HOH . GA 12 HOH A 11 411 296 HOH HOH . GA 12 HOH A 12 412 297 HOH HOH . GA 12 HOH A 13 413 298 HOH HOH . GA 12 HOH A 14 414 299 HOH HOH . GA 12 HOH A 15 415 300 HOH HOH . GA 12 HOH A 16 416 301 HOH HOH . GA 12 HOH A 17 417 302 HOH HOH . GA 12 HOH A 18 418 303 HOH HOH . GA 12 HOH A 19 419 304 HOH HOH . GA 12 HOH A 20 420 305 HOH HOH . GA 12 HOH A 21 421 306 HOH HOH . GA 12 HOH A 22 422 307 HOH HOH . GA 12 HOH A 23 423 308 HOH HOH . GA 12 HOH A 24 424 309 HOH HOH . GA 12 HOH A 25 425 310 HOH HOH . GA 12 HOH A 26 426 311 HOH HOH . GA 12 HOH A 27 427 312 HOH HOH . GA 12 HOH A 28 428 313 HOH HOH . GA 12 HOH A 29 429 314 HOH HOH . GA 12 HOH A 30 430 315 HOH HOH . GA 12 HOH A 31 431 316 HOH HOH . GA 12 HOH A 32 432 317 HOH HOH . GA 12 HOH A 33 433 318 HOH HOH . GA 12 HOH A 34 434 319 HOH HOH . GA 12 HOH A 35 435 320 HOH HOH . GA 12 HOH A 36 436 321 HOH HOH . GA 12 HOH A 37 437 322 HOH HOH . GA 12 HOH A 38 438 323 HOH HOH . GA 12 HOH A 39 439 324 HOH HOH . GA 12 HOH A 40 440 325 HOH HOH . GA 12 HOH A 41 441 326 HOH HOH . GA 12 HOH A 42 442 327 HOH HOH . GA 12 HOH A 43 443 328 HOH HOH . GA 12 HOH A 44 444 329 HOH HOH . GA 12 HOH A 45 445 330 HOH HOH . GA 12 HOH A 46 446 331 HOH HOH . GA 12 HOH A 47 447 332 HOH HOH . GA 12 HOH A 48 448 333 HOH HOH . GA 12 HOH A 49 449 334 HOH HOH . GA 12 HOH A 50 450 335 HOH HOH . GA 12 HOH A 51 451 336 HOH HOH . GA 12 HOH A 52 452 103 HOH HOH . GA 12 HOH A 53 453 104 HOH HOH . GA 12 HOH A 54 454 1 HOH HOH . GA 12 HOH A 55 455 1 HOH HOH . GA 12 HOH A 56 456 1 HOH HOH . GA 12 HOH A 57 457 1 HOH HOH . GA 12 HOH A 58 458 1 HOH HOH . HA 12 HOH B 1 3101 285 HOH HOH . HA 12 HOH B 2 3102 100 HOH HOH . HA 12 HOH B 3 3103 101 HOH HOH . HA 12 HOH B 4 3104 102 HOH HOH . HA 12 HOH B 5 3105 105 HOH HOH . HA 12 HOH B 6 3106 106 HOH HOH . HA 12 HOH B 7 3107 107 HOH HOH . HA 12 HOH B 8 3108 108 HOH HOH . HA 12 HOH B 9 3109 109 HOH HOH . HA 12 HOH B 10 3110 110 HOH HOH . HA 12 HOH B 11 3111 111 HOH HOH . HA 12 HOH B 12 3112 112 HOH HOH . HA 12 HOH B 13 3113 113 HOH HOH . HA 12 HOH B 14 3114 114 HOH HOH . HA 12 HOH B 15 3115 115 HOH HOH . HA 12 HOH B 16 3116 117 HOH HOH . HA 12 HOH B 17 3117 129 HOH HOH . HA 12 HOH B 18 3118 151 HOH HOH . HA 12 HOH B 19 3119 152 HOH HOH . HA 12 HOH B 20 3120 159 HOH HOH . IA 12 HOH C 1 401 285 HOH HOH . IA 12 HOH C 2 402 286 HOH HOH . IA 12 HOH C 3 403 287 HOH HOH . IA 12 HOH C 4 404 288 HOH HOH . IA 12 HOH C 5 405 289 HOH HOH . IA 12 HOH C 6 406 290 HOH HOH . IA 12 HOH C 7 407 291 HOH HOH . IA 12 HOH C 8 408 292 HOH HOH . IA 12 HOH C 9 409 293 HOH HOH . IA 12 HOH C 10 410 294 HOH HOH . IA 12 HOH C 11 411 295 HOH HOH . IA 12 HOH C 12 412 296 HOH HOH . IA 12 HOH C 13 413 297 HOH HOH . IA 12 HOH C 14 414 298 HOH HOH . IA 12 HOH C 15 415 299 HOH HOH . IA 12 HOH C 16 416 300 HOH HOH . IA 12 HOH C 17 417 301 HOH HOH . IA 12 HOH C 18 418 302 HOH HOH . IA 12 HOH C 19 419 303 HOH HOH . IA 12 HOH C 20 420 304 HOH HOH . IA 12 HOH C 21 421 305 HOH HOH . IA 12 HOH C 22 422 306 HOH HOH . IA 12 HOH C 23 423 307 HOH HOH . IA 12 HOH C 24 424 308 HOH HOH . IA 12 HOH C 25 425 309 HOH HOH . IA 12 HOH C 26 426 310 HOH HOH . IA 12 HOH C 27 427 311 HOH HOH . IA 12 HOH C 28 428 312 HOH HOH . IA 12 HOH C 29 429 313 HOH HOH . IA 12 HOH C 30 430 314 HOH HOH . IA 12 HOH C 31 431 315 HOH HOH . JA 12 HOH D 1 201 100 HOH HOH . JA 12 HOH D 2 202 101 HOH HOH . JA 12 HOH D 3 203 102 HOH HOH . JA 12 HOH D 4 204 103 HOH HOH . JA 12 HOH D 5 205 104 HOH HOH . JA 12 HOH D 6 206 105 HOH HOH . JA 12 HOH D 7 207 107 HOH HOH . JA 12 HOH D 8 208 127 HOH HOH . JA 12 HOH D 9 209 147 HOH HOH . JA 12 HOH D 10 210 1 HOH HOH . KA 12 HOH E 1 401 285 HOH HOH . KA 12 HOH E 2 402 286 HOH HOH . KA 12 HOH E 3 403 287 HOH HOH . KA 12 HOH E 4 404 288 HOH HOH . KA 12 HOH E 5 405 289 HOH HOH . KA 12 HOH E 6 406 290 HOH HOH . KA 12 HOH E 7 407 291 HOH HOH . KA 12 HOH E 8 408 292 HOH HOH . LA 12 HOH F 1 3101 100 HOH HOH . LA 12 HOH F 2 3102 124 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . U 8 35.396 15.404 83.754 1 108.46 ? S SO4 305 C 1 HETATM 2 O O1 SO4 . . . U 8 35.82 14.505 82.686 1 98.26 ? O1 SO4 305 C 1 HETATM 3 O O2 SO4 . . . U 8 36.161 15.101 84.962 1 121.35 ? O2 SO4 305 C 1 HETATM 4 O O3 SO4 . . . U 8 33.97 15.218 84.011 1 103.77 ? O3 SO4 305 C 1 HETATM 5 O O4 SO4 . . . U 8 35.641 16.791 83.364 1 108.67 ? O4 SO4 305 C 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 35 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 824 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 5 #