data_3U0Z
#
_model_server_result.job_id            jLz7eXWYtYXZsggOQ-2onA 
_model_server_result.datetime_utc      '2024-11-26 02:52:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3u0z 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":646}' 
#
_entry.id    3U0Z 
#
_exptl.entry_id    3U0Z 
_exptl.method      'X-RAY DIFFRACTION' 
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_entity.details                     ? 
_entity.formula_weight              329.206 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3U0Z 
_cell.length_a            97.67 
_cell.length_b            97.67 
_cell.length_c            113.2 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
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_symmetry.entry_id                 3U0Z 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        79 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 4' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1,2,3,4 
B,D,F 2 1,5,6,7 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_445 -x-1,-y-1,z -1 0 0 0 -1 0 0 0 1 -97.67 -97.67 0 
3 'crystal symmetry operation' 3_455 -y-1,x,z 0 -1 0 1 0 0 0 0 1 -97.67 0 0 
4 'crystal symmetry operation' 4_545 y,-x-1,z 0 1 0 -1 0 0 0 0 1 0 -97.67 0 
5 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
6 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 
7 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C10 H12 N5 O6 P' 
_chem_comp.formula_weight    329.206 
_chem_comp.id                CMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'CYCLIC AMP;CAMP' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P CMP doub 70 n n 
P O2P CMP sing 71 n n 
P O5' CMP sing 72 n n 
P O3' CMP sing 73 n n 
O2P HOP2 CMP sing 74 n n 
O5' C5' CMP sing 75 n n 
C5' C4' CMP sing 76 n n 
C5' "H5'1" CMP sing 77 n n 
C5' "H5'2" CMP sing 78 n n 
C4' O4' CMP sing 79 n n 
C4' C3' CMP sing 80 n n 
C4' H4' CMP sing 81 n n 
O4' C1' CMP sing 82 n n 
C3' O3' CMP sing 83 n n 
C3' C2' CMP sing 84 n n 
C3' H3' CMP sing 85 n n 
C2' O2' CMP sing 86 n n 
C2' C1' CMP sing 87 n n 
C2' H2' CMP sing 88 n n 
O2' HO2' CMP sing 89 n n 
C1' N9 CMP sing 90 n n 
C1' H1' CMP sing 91 n n 
N9 C8 CMP sing 92 n y 
N9 C4 CMP sing 93 n y 
C8 N7 CMP doub 94 n y 
C8 H8 CMP sing 95 n n 
N7 C5 CMP sing 96 n y 
C5 C6 CMP sing 97 n y 
C5 C4 CMP doub 98 n y 
C6 N6 CMP sing 99 n n 
C6 N1 CMP doub 100 n y 
N6 HN61 CMP sing 101 n n 
N6 HN62 CMP sing 102 n n 
N1 C2 CMP sing 103 n y 
C2 N3 CMP doub 104 n y 
C2 H2 CMP sing 105 n n 
N3 C4 CMP sing 106 n y 
#
_atom_sites.entry_id                     3U0Z 
_atom_sites.fract_transf_matrix[1][1]    0.010239 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.010239 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008834 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CMP A 1 646 646 CMP CMP . 
D 2 CMP B 1 646 646 CMP CMP . 
E 3 HOH A 1 3 3 HOH HOH . 
E 3 HOH A 2 5 5 HOH HOH . 
E 3 HOH A 3 8 8 HOH HOH . 
E 3 HOH A 4 9 9 HOH HOH . 
E 3 HOH A 5 10 10 HOH HOH . 
E 3 HOH A 6 15 15 HOH HOH . 
E 3 HOH A 7 16 16 HOH HOH . 
E 3 HOH A 8 20 20 HOH HOH . 
E 3 HOH A 9 23 23 HOH HOH . 
E 3 HOH A 10 24 24 HOH HOH . 
E 3 HOH A 11 27 27 HOH HOH . 
E 3 HOH A 12 28 28 HOH HOH . 
E 3 HOH A 13 29 29 HOH HOH . 
E 3 HOH A 14 31 31 HOH HOH . 
E 3 HOH A 15 33 33 HOH HOH . 
E 3 HOH A 16 34 34 HOH HOH . 
E 3 HOH A 17 36 36 HOH HOH . 
E 3 HOH A 18 37 37 HOH HOH . 
E 3 HOH A 19 38 38 HOH HOH . 
E 3 HOH A 20 41 41 HOH HOH . 
E 3 HOH A 21 44 44 HOH HOH . 
E 3 HOH A 22 45 45 HOH HOH . 
E 3 HOH A 23 48 48 HOH HOH . 
E 3 HOH A 24 50 50 HOH HOH . 
F 3 HOH B 1 1 1 HOH HOH . 
F 3 HOH B 2 2 2 HOH HOH . 
F 3 HOH B 3 4 4 HOH HOH . 
F 3 HOH B 4 6 6 HOH HOH . 
F 3 HOH B 5 7 7 HOH HOH . 
F 3 HOH B 6 11 11 HOH HOH . 
F 3 HOH B 7 12 12 HOH HOH . 
F 3 HOH B 8 13 13 HOH HOH . 
F 3 HOH B 9 14 14 HOH HOH . 
F 3 HOH B 10 17 17 HOH HOH . 
F 3 HOH B 11 18 18 HOH HOH . 
F 3 HOH B 12 19 19 HOH HOH . 
F 3 HOH B 13 21 21 HOH HOH . 
F 3 HOH B 14 22 22 HOH HOH . 
F 3 HOH B 15 25 25 HOH HOH . 
F 3 HOH B 16 26 26 HOH HOH . 
F 3 HOH B 17 30 30 HOH HOH . 
F 3 HOH B 18 32 32 HOH HOH . 
F 3 HOH B 19 35 35 HOH HOH . 
F 3 HOH B 20 39 39 HOH HOH . 
F 3 HOH B 21 40 40 HOH HOH . 
F 3 HOH B 22 42 42 HOH HOH . 
F 3 HOH B 23 46 46 HOH HOH . 
F 3 HOH B 24 47 47 HOH HOH . 
F 3 HOH B 25 49 49 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P CMP . . . D 2 -26.272 4.528 -19.568 1 25.18 ? P CMP 646 B 1 
HETATM 2 O O1P CMP . . . D 2 -26.294 5.212 -20.924 1 24.2 ? O1P CMP 646 B 1 
HETATM 3 O O2P CMP . . . D 2 -24.871 4.069 -19.203 1 23.66 ? O2P CMP 646 B 1 
HETATM 4 O O5' CMP . . . D 2 -26.794 5.578 -18.487 1 25.35 ? O5' CMP 646 B 1 
HETATM 5 C C5' CMP . . . D 2 -28.171 5.847 -18.324 1 26.08 ? C5' CMP 646 B 1 
HETATM 6 C C4' CMP . . . D 2 -28.812 4.529 -17.987 1 26.16 ? C4' CMP 646 B 1 
HETATM 7 O O4' CMP . . . D 2 -30.234 4.573 -17.803 1 26.82 ? O4' CMP 646 B 1 
HETATM 8 C C3' CMP . . . D 2 -28.669 3.65 -19.199 1 27.24 ? C3' CMP 646 B 1 
HETATM 9 O O3' CMP . . . D 2 -27.307 3.308 -19.395 1 26.23 ? O3' CMP 646 B 1 
HETATM 10 C C2' CMP . . . D 2 -29.626 2.538 -18.837 1 27.78 ? C2' CMP 646 B 1 
HETATM 11 O O2' CMP . . . D 2 -28.918 1.54 -18.093 1 30.01 ? O2' CMP 646 B 1 
HETATM 12 C C1' CMP . . . D 2 -30.747 3.266 -18.058 1 27.59 ? C1' CMP 646 B 1 
HETATM 13 N N9 CMP . . . D 2 -31.936 3.207 -18.963 1 29.77 ? N9 CMP 646 B 1 
HETATM 14 C C8 CMP . . . D 2 -32.005 3.712 -20.215 1 28.44 ? C8 CMP 646 B 1 
HETATM 15 N N7 CMP . . . D 2 -33.196 3.423 -20.794 1 28.96 ? N7 CMP 646 B 1 
HETATM 16 C C5 CMP . . . D 2 -33.923 2.7 -19.929 1 30.3 ? C5 CMP 646 B 1 
HETATM 17 C C6 CMP . . . D 2 -35.26 2.065 -19.926 1 31.1 ? C6 CMP 646 B 1 
HETATM 18 N N6 CMP . . . D 2 -36.064 2.155 -21.001 1 33.54 ? N6 CMP 646 B 1 
HETATM 19 N N1 CMP . . . D 2 -35.668 1.402 -18.828 1 31.83 ? N1 CMP 646 B 1 
HETATM 20 C C2 CMP . . . D 2 -34.85 1.295 -17.763 1 31.61 ? C2 CMP 646 B 1 
HETATM 21 N N3 CMP . . . D 2 -33.615 1.827 -17.687 1 30.69 ? N3 CMP 646 B 1 
HETATM 22 C C4 CMP . . . D 2 -33.092 2.545 -18.722 1 31.03 ? C4 CMP 646 B 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           15 
_model_server_stats.create_model_time_ms    11 
_model_server_stats.query_time_ms           309 
_model_server_stats.encode_time_ms          12 
_model_server_stats.element_count           22 
#