data_3U11
#
_model_server_result.job_id            5DnknLe2iOoM5s5uIGAfow 
_model_server_result.datetime_utc      '2024-11-28 23:16:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3u11 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"I","auth_seq_id":846}' 
#
_entry.id    3U11 
#
_exptl.entry_id    3U11 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              329.206 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3U11 
_cell.length_a            88.31 
_cell.length_b            88.31 
_cell.length_c            57.84 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3U11 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        75 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 4' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA tetrameric 4 author_and_software_defined_assembly 1 
PISA tetrameric 4 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,J 1 1,2,3,4 
B,I,K 2 1,5,6,7 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 
3 'crystal symmetry operation' 3_555 -y,x,z 0 -1 0 1 0 0 0 0 1 0 0 0 
4 'crystal symmetry operation' 4_555 y,-x,z 0 1 0 -1 0 0 0 0 1 0 0 0 
5 'crystal symmetry operation' 2_445 -x-1,-y-1,z -1 0 0 0 -1 0 0 0 1 -88.31 -88.31 0 
6 'crystal symmetry operation' 3_455 -y-1,x,z 0 -1 0 1 0 0 0 0 1 -88.31 0 0 
7 'crystal symmetry operation' 4_545 y,-x-1,z 0 1 0 -1 0 0 0 0 1 0 -88.31 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 I N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ASN 72 A ASN 585 1_555 A N CSO 73 A CSO 586 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 ? 
covale ? covale2 A C CSO 73 A CSO 586 1_555 A N ARG 74 A ARG 587 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? 
covale ? covale3 B C ASN 72 B ASN 585 1_555 B N CSO 73 B CSO 586 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale4 B C CSO 73 B CSO 586 1_555 B N ARG 74 B ARG 587 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
#
_chem_comp.formula           'C10 H12 N5 O6 P' 
_chem_comp.formula_weight    329.206 
_chem_comp.id                CMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'CYCLIC AMP;CAMP' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P CMP doub 70 n n 
P O2P CMP sing 71 n n 
P O5' CMP sing 72 n n 
P O3' CMP sing 73 n n 
O2P HOP2 CMP sing 74 n n 
O5' C5' CMP sing 75 n n 
C5' C4' CMP sing 76 n n 
C5' "H5'1" CMP sing 77 n n 
C5' "H5'2" CMP sing 78 n n 
C4' O4' CMP sing 79 n n 
C4' C3' CMP sing 80 n n 
C4' H4' CMP sing 81 n n 
O4' C1' CMP sing 82 n n 
C3' O3' CMP sing 83 n n 
C3' C2' CMP sing 84 n n 
C3' H3' CMP sing 85 n n 
C2' O2' CMP sing 86 n n 
C2' C1' CMP sing 87 n n 
C2' H2' CMP sing 88 n n 
O2' HO2' CMP sing 89 n n 
C1' N9 CMP sing 90 n n 
C1' H1' CMP sing 91 n n 
N9 C8 CMP sing 92 n y 
N9 C4 CMP sing 93 n y 
C8 N7 CMP doub 94 n y 
C8 H8 CMP sing 95 n n 
N7 C5 CMP sing 96 n y 
C5 C6 CMP sing 97 n y 
C5 C4 CMP doub 98 n y 
C6 N6 CMP sing 99 n n 
C6 N1 CMP doub 100 n y 
N6 HN61 CMP sing 101 n n 
N6 HN62 CMP sing 102 n n 
N1 C2 CMP sing 103 n y 
C2 N3 CMP doub 104 n y 
C2 H2 CMP sing 105 n n 
N3 C4 CMP sing 106 n y 
#
_atom_sites.entry_id                     3U11 
_atom_sites.fract_transf_matrix[1][1]    0.011324 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011324 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.017289 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CMP A 1 846 846 CMP CMP . 
D 3 GOL A 1 724 545 GOL GOL . 
E 3 GOL A 1 725 546 GOL GOL . 
F 3 GOL A 1 726 547 GOL GOL . 
G 3 GOL A 1 727 549 GOL GOL . 
H 3 GOL A 1 728 550 GOL GOL . 
I 2 CMP B 1 846 846 CMP CMP . 
J 4 HOH A 1 3 3 HOH HOH . 
J 4 HOH A 2 5 5 HOH HOH . 
J 4 HOH A 3 6 6 HOH HOH . 
J 4 HOH A 4 7 7 HOH HOH . 
J 4 HOH A 5 9 9 HOH HOH . 
J 4 HOH A 6 10 10 HOH HOH . 
J 4 HOH A 7 13 13 HOH HOH . 
J 4 HOH A 8 17 17 HOH HOH . 
J 4 HOH A 9 18 18 HOH HOH . 
J 4 HOH A 10 19 19 HOH HOH . 
J 4 HOH A 11 21 21 HOH HOH . 
J 4 HOH A 12 22 22 HOH HOH . 
J 4 HOH A 13 23 23 HOH HOH . 
J 4 HOH A 14 25 25 HOH HOH . 
J 4 HOH A 15 27 27 HOH HOH . 
J 4 HOH A 16 28 28 HOH HOH . 
J 4 HOH A 17 29 29 HOH HOH . 
J 4 HOH A 18 30 30 HOH HOH . 
J 4 HOH A 19 31 31 HOH HOH . 
J 4 HOH A 20 32 32 HOH HOH . 
J 4 HOH A 21 37 37 HOH HOH . 
J 4 HOH A 22 38 38 HOH HOH . 
J 4 HOH A 23 40 40 HOH HOH . 
J 4 HOH A 24 43 43 HOH HOH . 
J 4 HOH A 25 46 46 HOH HOH . 
J 4 HOH A 26 49 49 HOH HOH . 
J 4 HOH A 27 50 50 HOH HOH . 
J 4 HOH A 28 54 54 HOH HOH . 
J 4 HOH A 29 60 60 HOH HOH . 
J 4 HOH A 30 63 63 HOH HOH . 
J 4 HOH A 31 64 64 HOH HOH . 
J 4 HOH A 32 65 65 HOH HOH . 
J 4 HOH A 33 66 66 HOH HOH . 
J 4 HOH A 34 69 69 HOH HOH . 
J 4 HOH A 35 70 70 HOH HOH . 
J 4 HOH A 36 72 72 HOH HOH . 
J 4 HOH A 37 74 74 HOH HOH . 
J 4 HOH A 38 75 75 HOH HOH . 
J 4 HOH A 39 78 78 HOH HOH . 
J 4 HOH A 40 80 80 HOH HOH . 
J 4 HOH A 41 81 81 HOH HOH . 
J 4 HOH A 42 83 83 HOH HOH . 
J 4 HOH A 43 85 85 HOH HOH . 
J 4 HOH A 44 86 86 HOH HOH . 
J 4 HOH A 45 90 90 HOH HOH . 
J 4 HOH A 46 91 91 HOH HOH . 
J 4 HOH A 47 92 92 HOH HOH . 
J 4 HOH A 48 94 94 HOH HOH . 
J 4 HOH A 49 100 100 HOH HOH . 
J 4 HOH A 50 102 102 HOH HOH . 
J 4 HOH A 51 103 103 HOH HOH . 
J 4 HOH A 52 104 104 HOH HOH . 
J 4 HOH A 53 105 105 HOH HOH . 
J 4 HOH A 54 108 108 HOH HOH . 
J 4 HOH A 55 109 109 HOH HOH . 
J 4 HOH A 56 111 111 HOH HOH . 
J 4 HOH A 57 112 112 HOH HOH . 
J 4 HOH A 58 114 114 HOH HOH . 
J 4 HOH A 59 116 116 HOH HOH . 
J 4 HOH A 60 119 119 HOH HOH . 
J 4 HOH A 61 121 121 HOH HOH . 
J 4 HOH A 62 122 122 HOH HOH . 
J 4 HOH A 63 125 125 HOH HOH . 
J 4 HOH A 64 130 130 HOH HOH . 
J 4 HOH A 65 132 132 HOH HOH . 
J 4 HOH A 66 134 134 HOH HOH . 
J 4 HOH A 67 135 135 HOH HOH . 
J 4 HOH A 68 139 139 HOH HOH . 
J 4 HOH A 69 144 144 HOH HOH . 
J 4 HOH A 70 146 146 HOH HOH . 
J 4 HOH A 71 147 147 HOH HOH . 
J 4 HOH A 72 148 148 HOH HOH . 
J 4 HOH A 73 149 149 HOH HOH . 
J 4 HOH A 74 151 151 HOH HOH . 
J 4 HOH A 75 152 152 HOH HOH . 
J 4 HOH A 76 157 157 HOH HOH . 
K 4 HOH B 1 1 1 HOH HOH . 
K 4 HOH B 2 2 2 HOH HOH . 
K 4 HOH B 3 4 4 HOH HOH . 
K 4 HOH B 4 12 12 HOH HOH . 
K 4 HOH B 5 14 14 HOH HOH . 
K 4 HOH B 6 15 15 HOH HOH . 
K 4 HOH B 7 16 16 HOH HOH . 
K 4 HOH B 8 20 20 HOH HOH . 
K 4 HOH B 9 24 24 HOH HOH . 
K 4 HOH B 10 33 33 HOH HOH . 
K 4 HOH B 11 34 34 HOH HOH . 
K 4 HOH B 12 36 36 HOH HOH . 
K 4 HOH B 13 39 39 HOH HOH . 
K 4 HOH B 14 41 41 HOH HOH . 
K 4 HOH B 15 42 42 HOH HOH . 
K 4 HOH B 16 44 44 HOH HOH . 
K 4 HOH B 17 45 45 HOH HOH . 
K 4 HOH B 18 47 47 HOH HOH . 
K 4 HOH B 19 48 48 HOH HOH . 
K 4 HOH B 20 51 51 HOH HOH . 
K 4 HOH B 21 52 52 HOH HOH . 
K 4 HOH B 22 53 53 HOH HOH . 
K 4 HOH B 23 55 55 HOH HOH . 
K 4 HOH B 24 56 56 HOH HOH . 
K 4 HOH B 25 57 57 HOH HOH . 
K 4 HOH B 26 58 58 HOH HOH . 
K 4 HOH B 27 59 59 HOH HOH . 
K 4 HOH B 28 61 61 HOH HOH . 
K 4 HOH B 29 62 62 HOH HOH . 
K 4 HOH B 30 67 67 HOH HOH . 
K 4 HOH B 31 68 68 HOH HOH . 
K 4 HOH B 32 73 73 HOH HOH . 
K 4 HOH B 33 76 76 HOH HOH . 
K 4 HOH B 34 77 77 HOH HOH . 
K 4 HOH B 35 79 79 HOH HOH . 
K 4 HOH B 36 82 82 HOH HOH . 
K 4 HOH B 37 84 84 HOH HOH . 
K 4 HOH B 38 87 87 HOH HOH . 
K 4 HOH B 39 88 88 HOH HOH . 
K 4 HOH B 40 89 89 HOH HOH . 
K 4 HOH B 41 93 93 HOH HOH . 
K 4 HOH B 42 95 95 HOH HOH . 
K 4 HOH B 43 96 96 HOH HOH . 
K 4 HOH B 44 98 98 HOH HOH . 
K 4 HOH B 45 99 99 HOH HOH . 
K 4 HOH B 46 101 101 HOH HOH . 
K 4 HOH B 47 106 106 HOH HOH . 
K 4 HOH B 48 107 107 HOH HOH . 
K 4 HOH B 49 115 115 HOH HOH . 
K 4 HOH B 50 117 117 HOH HOH . 
K 4 HOH B 51 118 118 HOH HOH . 
K 4 HOH B 52 123 123 HOH HOH . 
K 4 HOH B 53 124 124 HOH HOH . 
K 4 HOH B 54 126 126 HOH HOH . 
K 4 HOH B 55 127 127 HOH HOH . 
K 4 HOH B 56 128 128 HOH HOH . 
K 4 HOH B 57 129 129 HOH HOH . 
K 4 HOH B 58 131 131 HOH HOH . 
K 4 HOH B 59 133 133 HOH HOH . 
K 4 HOH B 60 136 136 HOH HOH . 
K 4 HOH B 61 137 137 HOH HOH . 
K 4 HOH B 62 138 138 HOH HOH . 
K 4 HOH B 63 140 140 HOH HOH . 
K 4 HOH B 64 142 142 HOH HOH . 
K 4 HOH B 65 143 143 HOH HOH . 
K 4 HOH B 66 145 145 HOH HOH . 
K 4 HOH B 67 150 150 HOH HOH . 
K 4 HOH B 68 153 153 HOH HOH . 
K 4 HOH B 69 154 154 HOH HOH . 
K 4 HOH B 70 155 155 HOH HOH . 
K 4 HOH B 71 156 156 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P CMP . . . I 2 -16.609 -42.348 -39.672 1 13.03 ? P CMP 846 B 1 
HETATM 2 O O1P CMP . . . I 2 -16.027 -43.161 -40.795 1 14.55 ? O1P CMP 846 B 1 
HETATM 3 O O2P CMP . . . I 2 -18.096 -42.182 -39.884 1 12.28 ? O2P CMP 846 B 1 
HETATM 4 O O5' CMP . . . I 2 -16.194 -43.055 -38.28 1 10.94 ? O5' CMP 846 B 1 
HETATM 5 C C5' CMP . . . I 2 -14.838 -43.052 -37.865 1 12.83 ? C5' CMP 846 B 1 
HETATM 6 C C4' CMP . . . I 2 -14.44 -41.586 -37.87 1 16.16 ? C4' CMP 846 B 1 
HETATM 7 O O4' CMP . . . I 2 -13.098 -41.251 -37.481 1 17.67 ? O4' CMP 846 B 1 
HETATM 8 C C3' CMP . . . I 2 -14.548 -40.96 -39.246 1 14.81 ? C3' CMP 846 B 1 
HETATM 9 O O3' CMP . . . I 2 -15.905 -40.926 -39.587 1 13.46 ? O3' CMP 846 B 1 
HETATM 10 C C2' CMP . . . I 2 -13.986 -39.588 -38.967 1 16.04 ? C2' CMP 846 B 1 
HETATM 11 O O2' CMP . . . I 2 -14.97 -38.77 -38.331 1 12.09 ? O2' CMP 846 B 1 
HETATM 12 C C1' CMP . . . I 2 -12.891 -39.913 -37.956 1 17.8 ? C1' CMP 846 B 1 
HETATM 13 N N9 CMP . . . I 2 -11.615 -39.771 -38.674 1 19.36 ? N9 CMP 846 B 1 
HETATM 14 C C8 CMP . . . I 2 -11.239 -40.422 -39.793 1 20.22 ? C8 CMP 846 B 1 
HETATM 15 N N7 CMP . . . I 2 -9.997 -40.011 -40.174 1 21.45 ? N7 CMP 846 B 1 
HETATM 16 C C5 CMP . . . I 2 -9.582 -39.075 -39.295 1 20.46 ? C5 CMP 846 B 1 
HETATM 17 C C6 CMP . . . I 2 -8.388 -38.238 -39.108 1 21.19 ? C6 CMP 846 B 1 
HETATM 18 N N6 CMP . . . I 2 -7.347 -38.314 -39.973 1 21.83 ? N6 CMP 846 B 1 
HETATM 19 N N1 CMP . . . I 2 -8.37 -37.402 -38.034 1 23.59 ? N1 CMP 846 B 1 
HETATM 20 C C2 CMP . . . I 2 -9.384 -37.282 -37.147 1 22.07 ? C2 CMP 846 B 1 
HETATM 21 N N3 CMP . . . I 2 -10.502 -38.016 -37.275 1 21.63 ? N3 CMP 846 B 1 
HETATM 22 C C4 CMP . . . I 2 -10.653 -38.917 -38.3 1 20.73 ? C4 CMP 846 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           288 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           22 
#