data_3U13 # _model_server_result.job_id xJlGM-xErQQw1o1STiy3OQ _model_server_result.datetime_utc '2025-01-19 00:24:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3u13 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1003}' # _entry.id 3U13 # _exptl.entry_id 3U13 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3U13 _cell.length_a 73.436 _cell.length_b 73.436 _cell.length_c 105.083 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3U13 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 -y,-x,-z+1/2 0 -1 0 -1 0 0 0 0 -1 0 0 52.5415 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C ASP 11 A ASP 11 1_555 A N MSE 12 A MSE 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.312 ? covale ? covale2 A C MSE 12 A MSE 12 1_555 A N ASP 13 A ASP 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale3 A C GLU 87 A GLU 87 1_555 A N MSE 88 A MSE 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 A C MSE 88 A MSE 88 1_555 A N ALA 89 A ALA 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 A C LYS 104 A LYS 104 1_555 A N MSE 105 A MSE 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale6 A C MSE 105 A MSE 105 1_555 A N PHE 106 A PHE 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? metalc ? metalc1 A OD2 ASP 11 A ASP 11 1_555 C MG MG . A MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.447 ? metalc ? metalc2 A O ASP 13 A ASP 13 1_555 C MG MG . A MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.404 ? metalc ? metalc3 A OD1 ASP 146 A ASP 146 1_555 C MG MG . A MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc4 B O2 PO4 . A PO4 209 1_555 C MG MG . A MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc5 F NA NA . A NA 212 1_555 G O HOH . A HOH 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.149 ? metalc ? metalc6 G O HOH . A HOH 271 1_555 C MG MG . A MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.522 ? metalc ? metalc7 G O HOH . A HOH 377 1_555 C MG MG . A MG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.921 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3U13 _atom_sites.fract_transf_matrix[1][1] 0.013617 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013617 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009516 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 A 1 209 1 PO4 PO4 . C 3 MG A 1 1003 1003 MG MG . D 2 PO4 A 1 210 2 PO4 PO4 . E 4 PEG A 1 211 1 PEG PEG . F 5 NA A 1 212 1 NA NA . G 6 HOH A 1 213 213 HOH HOH . G 6 HOH A 2 214 214 HOH HOH . G 6 HOH A 3 215 215 HOH HOH . G 6 HOH A 4 216 216 HOH HOH . G 6 HOH A 5 217 217 HOH HOH . G 6 HOH A 6 218 218 HOH HOH . G 6 HOH A 7 219 219 HOH HOH . G 6 HOH A 8 220 220 HOH HOH . G 6 HOH A 9 221 221 HOH HOH . G 6 HOH A 10 222 222 HOH HOH . G 6 HOH A 11 223 223 HOH HOH . G 6 HOH A 12 224 224 HOH HOH . G 6 HOH A 13 225 225 HOH HOH . G 6 HOH A 14 226 226 HOH HOH . G 6 HOH A 15 227 227 HOH HOH . G 6 HOH A 16 228 228 HOH HOH . G 6 HOH A 17 229 229 HOH HOH . G 6 HOH A 18 230 230 HOH HOH . G 6 HOH A 19 231 231 HOH HOH . G 6 HOH A 20 232 232 HOH HOH . G 6 HOH A 21 233 233 HOH HOH . G 6 HOH A 22 234 234 HOH HOH . G 6 HOH A 23 235 235 HOH HOH . G 6 HOH A 24 236 236 HOH HOH . G 6 HOH A 25 237 237 HOH HOH . G 6 HOH A 26 238 238 HOH HOH . G 6 HOH A 27 239 239 HOH HOH . G 6 HOH A 28 240 240 HOH HOH . G 6 HOH A 29 241 241 HOH HOH . G 6 HOH A 30 242 242 HOH HOH . G 6 HOH A 31 243 243 HOH HOH . G 6 HOH A 32 244 244 HOH HOH . G 6 HOH A 33 245 245 HOH HOH . G 6 HOH A 34 246 246 HOH HOH . G 6 HOH A 35 247 247 HOH HOH . G 6 HOH A 36 248 248 HOH HOH . G 6 HOH A 37 249 249 HOH HOH . G 6 HOH A 38 250 250 HOH HOH . G 6 HOH A 39 251 251 HOH HOH . G 6 HOH A 40 252 252 HOH HOH . G 6 HOH A 41 253 1 HOH HOH . G 6 HOH A 42 254 2 HOH HOH . G 6 HOH A 43 255 3 HOH HOH . G 6 HOH A 44 256 4 HOH HOH . G 6 HOH A 45 257 5 HOH HOH . G 6 HOH A 46 258 6 HOH HOH . G 6 HOH A 47 259 7 HOH HOH . G 6 HOH A 48 260 8 HOH HOH . G 6 HOH A 49 261 9 HOH HOH . G 6 HOH A 50 262 10 HOH HOH . G 6 HOH A 51 263 11 HOH HOH . G 6 HOH A 52 264 12 HOH HOH . G 6 HOH A 53 265 13 HOH HOH . G 6 HOH A 54 266 14 HOH HOH . G 6 HOH A 55 267 15 HOH HOH . G 6 HOH A 56 268 16 HOH HOH . G 6 HOH A 57 269 17 HOH HOH . G 6 HOH A 58 270 18 HOH HOH . G 6 HOH A 59 271 19 HOH HOH . G 6 HOH A 60 272 20 HOH HOH . G 6 HOH A 61 273 21 HOH HOH . G 6 HOH A 62 274 22 HOH HOH . G 6 HOH A 63 275 23 HOH HOH . G 6 HOH A 64 276 24 HOH HOH . G 6 HOH A 65 277 25 HOH HOH . G 6 HOH A 66 278 26 HOH HOH . G 6 HOH A 67 279 27 HOH HOH . G 6 HOH A 68 280 28 HOH HOH . G 6 HOH A 69 281 29 HOH HOH . G 6 HOH A 70 282 30 HOH HOH . G 6 HOH A 71 283 31 HOH HOH . G 6 HOH A 72 284 32 HOH HOH . G 6 HOH A 73 285 33 HOH HOH . G 6 HOH A 74 286 34 HOH HOH . G 6 HOH A 75 287 35 HOH HOH . G 6 HOH A 76 288 36 HOH HOH . G 6 HOH A 77 289 37 HOH HOH . G 6 HOH A 78 290 38 HOH HOH . G 6 HOH A 79 291 39 HOH HOH . G 6 HOH A 80 292 40 HOH HOH . G 6 HOH A 81 293 41 HOH HOH . G 6 HOH A 82 294 42 HOH HOH . G 6 HOH A 83 295 43 HOH HOH . G 6 HOH A 84 296 44 HOH HOH . G 6 HOH A 85 297 45 HOH HOH . G 6 HOH A 86 298 46 HOH HOH . G 6 HOH A 87 299 47 HOH HOH . G 6 HOH A 88 300 48 HOH HOH . G 6 HOH A 89 301 49 HOH HOH . G 6 HOH A 90 302 50 HOH HOH . G 6 HOH A 91 303 51 HOH HOH . G 6 HOH A 92 304 52 HOH HOH . G 6 HOH A 93 305 53 HOH HOH . G 6 HOH A 94 306 54 HOH HOH . G 6 HOH A 95 307 55 HOH HOH . G 6 HOH A 96 308 56 HOH HOH . G 6 HOH A 97 309 57 HOH HOH . G 6 HOH A 98 310 58 HOH HOH . G 6 HOH A 99 311 59 HOH HOH . G 6 HOH A 100 312 60 HOH HOH . G 6 HOH A 101 313 61 HOH HOH . G 6 HOH A 102 314 62 HOH HOH . G 6 HOH A 103 315 64 HOH HOH . G 6 HOH A 104 316 65 HOH HOH . G 6 HOH A 105 317 66 HOH HOH . G 6 HOH A 106 318 67 HOH HOH . G 6 HOH A 107 319 68 HOH HOH . G 6 HOH A 108 320 69 HOH HOH . G 6 HOH A 109 321 70 HOH HOH . G 6 HOH A 110 322 71 HOH HOH . G 6 HOH A 111 323 72 HOH HOH . G 6 HOH A 112 324 73 HOH HOH . G 6 HOH A 113 325 74 HOH HOH . G 6 HOH A 114 326 75 HOH HOH . G 6 HOH A 115 327 76 HOH HOH . G 6 HOH A 116 328 77 HOH HOH . G 6 HOH A 117 329 78 HOH HOH . G 6 HOH A 118 330 79 HOH HOH . G 6 HOH A 119 331 80 HOH HOH . G 6 HOH A 120 332 81 HOH HOH . G 6 HOH A 121 333 82 HOH HOH . G 6 HOH A 122 334 83 HOH HOH . G 6 HOH A 123 335 84 HOH HOH . G 6 HOH A 124 336 85 HOH HOH . G 6 HOH A 125 337 86 HOH HOH . G 6 HOH A 126 338 87 HOH HOH . G 6 HOH A 127 339 88 HOH HOH . G 6 HOH A 128 340 89 HOH HOH . G 6 HOH A 129 341 90 HOH HOH . G 6 HOH A 130 342 91 HOH HOH . G 6 HOH A 131 343 92 HOH HOH . G 6 HOH A 132 344 93 HOH HOH . G 6 HOH A 133 345 94 HOH HOH . G 6 HOH A 134 346 95 HOH HOH . G 6 HOH A 135 347 96 HOH HOH . G 6 HOH A 136 348 97 HOH HOH . G 6 HOH A 137 349 98 HOH HOH . G 6 HOH A 138 350 99 HOH HOH . G 6 HOH A 139 351 100 HOH HOH . G 6 HOH A 140 352 101 HOH HOH . G 6 HOH A 141 353 102 HOH HOH . G 6 HOH A 142 354 103 HOH HOH . G 6 HOH A 143 355 104 HOH HOH . G 6 HOH A 144 356 105 HOH HOH . G 6 HOH A 145 357 106 HOH HOH . G 6 HOH A 146 358 107 HOH HOH . G 6 HOH A 147 359 108 HOH HOH . G 6 HOH A 148 360 109 HOH HOH . G 6 HOH A 149 361 110 HOH HOH . G 6 HOH A 150 362 111 HOH HOH . G 6 HOH A 151 363 112 HOH HOH . G 6 HOH A 152 364 113 HOH HOH . G 6 HOH A 153 365 114 HOH HOH . G 6 HOH A 154 366 116 HOH HOH . G 6 HOH A 155 367 117 HOH HOH . G 6 HOH A 156 368 118 HOH HOH . G 6 HOH A 157 369 119 HOH HOH . G 6 HOH A 158 370 120 HOH HOH . G 6 HOH A 159 371 121 HOH HOH . G 6 HOH A 160 372 122 HOH HOH . G 6 HOH A 161 373 123 HOH HOH . G 6 HOH A 162 374 125 HOH HOH . G 6 HOH A 163 375 126 HOH HOH . G 6 HOH A 164 376 127 HOH HOH . G 6 HOH A 165 377 128 HOH HOH . G 6 HOH A 166 378 129 HOH HOH . G 6 HOH A 167 379 130 HOH HOH . G 6 HOH A 168 380 131 HOH HOH . G 6 HOH A 169 381 132 HOH HOH . G 6 HOH A 170 382 133 HOH HOH . G 6 HOH A 171 383 134 HOH HOH . G 6 HOH A 172 384 135 HOH HOH . G 6 HOH A 173 385 136 HOH HOH . G 6 HOH A 174 386 137 HOH HOH . G 6 HOH A 175 387 138 HOH HOH . G 6 HOH A 176 388 139 HOH HOH . G 6 HOH A 177 389 140 HOH HOH . G 6 HOH A 178 390 141 HOH HOH . G 6 HOH A 179 391 142 HOH HOH . G 6 HOH A 180 392 143 HOH HOH . G 6 HOH A 181 393 144 HOH HOH . G 6 HOH A 182 394 145 HOH HOH . G 6 HOH A 183 395 146 HOH HOH . G 6 HOH A 184 396 147 HOH HOH . G 6 HOH A 185 397 148 HOH HOH . G 6 HOH A 186 398 149 HOH HOH . G 6 HOH A 187 399 150 HOH HOH . G 6 HOH A 188 400 151 HOH HOH . G 6 HOH A 189 401 152 HOH HOH . G 6 HOH A 190 402 153 HOH HOH . G 6 HOH A 191 403 154 HOH HOH . G 6 HOH A 192 404 155 HOH HOH . G 6 HOH A 193 405 156 HOH HOH . G 6 HOH A 194 406 157 HOH HOH . G 6 HOH A 195 407 158 HOH HOH . G 6 HOH A 196 408 159 HOH HOH . G 6 HOH A 197 409 160 HOH HOH . G 6 HOH A 198 410 161 HOH HOH . G 6 HOH A 199 411 162 HOH HOH . G 6 HOH A 200 412 163 HOH HOH . G 6 HOH A 201 413 164 HOH HOH . G 6 HOH A 202 414 165 HOH HOH . G 6 HOH A 203 415 166 HOH HOH . G 6 HOH A 204 416 167 HOH HOH . G 6 HOH A 205 417 168 HOH HOH . G 6 HOH A 206 418 169 HOH HOH . G 6 HOH A 207 419 170 HOH HOH . G 6 HOH A 208 420 171 HOH HOH . G 6 HOH A 209 421 172 HOH HOH . G 6 HOH A 210 422 173 HOH HOH . G 6 HOH A 211 423 174 HOH HOH . G 6 HOH A 212 424 175 HOH HOH . G 6 HOH A 213 425 176 HOH HOH . G 6 HOH A 214 426 177 HOH HOH . G 6 HOH A 215 427 178 HOH HOH . G 6 HOH A 216 428 179 HOH HOH . G 6 HOH A 217 429 180 HOH HOH . G 6 HOH A 218 430 181 HOH HOH . G 6 HOH A 219 431 182 HOH HOH . G 6 HOH A 220 432 183 HOH HOH . G 6 HOH A 221 433 184 HOH HOH . G 6 HOH A 222 434 185 HOH HOH . G 6 HOH A 223 435 186 HOH HOH . G 6 HOH A 224 436 188 HOH HOH . G 6 HOH A 225 437 189 HOH HOH . G 6 HOH A 226 438 190 HOH HOH . G 6 HOH A 227 439 191 HOH HOH . G 6 HOH A 228 440 192 HOH HOH . G 6 HOH A 229 441 193 HOH HOH . G 6 HOH A 230 442 194 HOH HOH . G 6 HOH A 231 443 195 HOH HOH . G 6 HOH A 232 444 196 HOH HOH . G 6 HOH A 233 445 197 HOH HOH . G 6 HOH A 234 446 198 HOH HOH . G 6 HOH A 235 447 199 HOH HOH . G 6 HOH A 236 448 200 HOH HOH . G 6 HOH A 237 449 201 HOH HOH . G 6 HOH A 238 450 202 HOH HOH . G 6 HOH A 239 451 203 HOH HOH . G 6 HOH A 240 452 204 HOH HOH . G 6 HOH A 241 453 205 HOH HOH . G 6 HOH A 242 454 206 HOH HOH . G 6 HOH A 243 455 207 HOH HOH . G 6 HOH A 244 456 208 HOH HOH . G 6 HOH A 245 457 209 HOH HOH . G 6 HOH A 246 458 210 HOH HOH . G 6 HOH A 247 459 211 HOH HOH . G 6 HOH A 248 460 212 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x -1.338 _atom_site.Cartn_y 20.777 _atom_site.Cartn_z 21.273 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 16.29 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 1003 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #