data_3U15 # _model_server_result.job_id ujck6dwioDk7XHSgakPc1Q _model_server_result.datetime_utc '2024-11-24 21:32:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3u15 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":1}' # _entry.id 3U15 # _exptl.entry_id 3U15 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 401.794 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (5Z)-5-[(6-chloro-7-methyl-1H-indol-3-yl)methylidene]-3-(3,4-difluorobenzyl)imidazolidine-2,4-dione _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3U15 _cell.length_a 73.031 _cell.length_b 73.031 _cell.length_c 68.774 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3U15 _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,G,K,L 1 1 C,D,H,I,J,M,N 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 H N N ? 2 I N N # _chem_comp.formula 'C20 H14 Cl F2 N3 O2' _chem_comp.formula_weight 401.794 _chem_comp.id 03M _chem_comp.mon_nstd_flag . _chem_comp.name (5Z)-5-[(6-chloro-7-methyl-1H-indol-3-yl)methylidene]-3-(3,4-difluorobenzyl)imidazolidine-2,4-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4 C1 03M sing 1 n y C4 H4 03M sing 2 n n C6 C7 03M doub 3 n y C6 N5 03M sing 4 n y C6 H6 03M sing 5 n n C7 C8 03M sing 6 n y C8 C4 03M doub 7 n y C8 C9 03M sing 8 n y C10 C7 03M sing 9 n n C10 H10 03M sing 10 n n N12 C11 03M sing 11 n n C13 N12 03M sing 12 n n C15 O17 03M doub 13 n n C15 C11 03M sing 14 n n C20 C21 03M sing 15 n y C20 H20 03M sing 16 n n C21 H21 03M sing 17 n n C22 C21 03M doub 18 n y C22 F26 03M sing 19 n n C24 C19 03M sing 20 n y C24 C23 03M doub 21 n y C24 H24 03M sing 22 n n C1 C2 03M doub 23 n y C1 H1 03M sing 24 n n C2 CL 03M sing 25 n n C3 C2 03M sing 26 n y C3 C27 03M sing 27 n n N5 C9 03M sing 28 n y N5 HN5 03M sing 29 n n C9 C3 03M doub 30 n y C11 C10 03M doub 31 z n N14 C13 03M sing 32 n n N14 C15 03M sing 33 n n O16 C13 03M doub 34 n n C18 N14 03M sing 35 n n C18 C19 03M sing 36 n n C18 H18 03M sing 37 n n C18 H18A 03M sing 38 n n C19 C20 03M doub 39 n y C23 C22 03M sing 40 n y F25 C23 03M sing 41 n n C27 H27 03M sing 42 n n C27 H27A 03M sing 43 n n C27 H27B 03M sing 44 n n N12 H14 03M sing 45 n n # _atom_sites.entry_id 3U15 _atom_sites.fract_transf_matrix[1][1] 0.013693 _atom_sites.fract_transf_matrix[1][2] 0.007906 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015811 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01454 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 03M A 1 1 1 03M 03M . F 3 SO4 A 1 112 1 SO4 SO4 . G 2 03M B 1 1 1 03M 03M . H 2 03M C 1 1 1 03M 03M . I 2 03M D 1 1 1 03M 03M . J 3 SO4 D 1 2 2 SO4 SO4 . K 4 HOH A 1 2 2 HOH HOH . K 4 HOH A 2 3 3 HOH HOH . K 4 HOH A 3 4 4 HOH HOH . K 4 HOH A 4 7 7 HOH HOH . K 4 HOH A 5 9 9 HOH HOH . K 4 HOH A 6 113 16 HOH HOH . K 4 HOH A 7 114 114 HOH HOH . K 4 HOH A 8 115 115 HOH HOH . K 4 HOH A 9 116 17 HOH HOH . K 4 HOH A 10 117 18 HOH HOH . K 4 HOH A 11 118 19 HOH HOH . K 4 HOH A 12 119 119 HOH HOH . K 4 HOH A 13 120 120 HOH HOH . K 4 HOH A 14 121 30 HOH HOH . K 4 HOH A 15 122 122 HOH HOH . K 4 HOH A 16 123 32 HOH HOH . K 4 HOH A 17 124 33 HOH HOH . K 4 HOH A 18 125 34 HOH HOH . K 4 HOH A 19 126 38 HOH HOH . K 4 HOH A 20 127 127 HOH HOH . K 4 HOH A 21 128 39 HOH HOH . K 4 HOH A 22 129 42 HOH HOH . K 4 HOH A 23 130 44 HOH HOH . K 4 HOH A 24 131 131 HOH HOH . K 4 HOH A 25 132 132 HOH HOH . K 4 HOH A 26 133 133 HOH HOH . K 4 HOH A 27 134 134 HOH HOH . K 4 HOH A 28 135 135 HOH HOH . K 4 HOH A 29 136 45 HOH HOH . K 4 HOH A 30 137 46 HOH HOH . K 4 HOH A 31 138 47 HOH HOH . K 4 HOH A 32 139 48 HOH HOH . K 4 HOH A 33 140 49 HOH HOH . K 4 HOH A 34 141 50 HOH HOH . K 4 HOH A 35 142 51 HOH HOH . K 4 HOH A 36 143 52 HOH HOH . K 4 HOH A 37 144 54 HOH HOH . K 4 HOH A 38 145 65 HOH HOH . K 4 HOH A 39 146 66 HOH HOH . K 4 HOH A 40 147 67 HOH HOH . K 4 HOH A 41 148 73 HOH HOH . K 4 HOH A 42 149 111 HOH HOH . K 4 HOH A 43 150 112 HOH HOH . L 4 HOH B 1 112 20 HOH HOH . L 4 HOH B 2 113 113 HOH HOH . L 4 HOH B 3 114 21 HOH HOH . L 4 HOH B 4 115 22 HOH HOH . L 4 HOH B 5 116 23 HOH HOH . L 4 HOH B 6 117 31 HOH HOH . L 4 HOH B 7 118 118 HOH HOH . L 4 HOH B 8 119 40 HOH HOH . L 4 HOH B 9 120 53 HOH HOH . L 4 HOH B 10 121 121 HOH HOH . L 4 HOH B 11 122 55 HOH HOH . L 4 HOH B 12 123 123 HOH HOH . L 4 HOH B 13 124 56 HOH HOH . L 4 HOH B 14 125 57 HOH HOH . L 4 HOH B 15 126 126 HOH HOH . L 4 HOH B 16 127 58 HOH HOH . L 4 HOH B 17 128 68 HOH HOH . L 4 HOH B 18 129 69 HOH HOH . L 4 HOH B 19 130 70 HOH HOH . L 4 HOH B 20 131 71 HOH HOH . L 4 HOH B 21 132 72 HOH HOH . L 4 HOH B 22 133 74 HOH HOH . L 4 HOH B 23 134 75 HOH HOH . L 4 HOH B 24 135 76 HOH HOH . L 4 HOH B 25 136 136 HOH HOH . L 4 HOH B 26 137 137 HOH HOH . L 4 HOH B 27 138 138 HOH HOH . L 4 HOH B 28 139 139 HOH HOH . L 4 HOH B 29 140 140 HOH HOH . L 4 HOH B 30 141 141 HOH HOH . L 4 HOH B 31 142 78 HOH HOH . L 4 HOH B 32 143 79 HOH HOH . L 4 HOH B 33 144 110 HOH HOH . L 4 HOH B 34 147 147 HOH HOH . M 4 HOH C 1 5 5 HOH HOH . M 4 HOH C 2 6 6 HOH HOH . M 4 HOH C 3 8 8 HOH HOH . M 4 HOH C 4 10 10 HOH HOH . M 4 HOH C 5 112 1 HOH HOH . M 4 HOH C 6 113 13 HOH HOH . M 4 HOH C 7 114 14 HOH HOH . M 4 HOH C 8 115 15 HOH HOH . M 4 HOH C 9 116 116 HOH HOH . M 4 HOH C 10 117 117 HOH HOH . M 4 HOH C 11 118 35 HOH HOH . M 4 HOH C 12 119 41 HOH HOH . M 4 HOH C 13 120 43 HOH HOH . M 4 HOH C 14 121 61 HOH HOH . M 4 HOH C 15 122 62 HOH HOH . M 4 HOH C 16 123 63 HOH HOH . M 4 HOH C 17 124 124 HOH HOH . M 4 HOH C 18 125 125 HOH HOH . M 4 HOH C 19 126 64 HOH HOH . M 4 HOH C 20 127 80 HOH HOH . M 4 HOH C 21 128 81 HOH HOH . M 4 HOH C 22 129 82 HOH HOH . M 4 HOH C 23 130 83 HOH HOH . M 4 HOH C 24 131 84 HOH HOH . M 4 HOH C 25 132 85 HOH HOH . M 4 HOH C 26 133 86 HOH HOH . M 4 HOH C 27 134 87 HOH HOH . M 4 HOH C 28 135 88 HOH HOH . M 4 HOH C 29 136 90 HOH HOH . M 4 HOH C 30 137 92 HOH HOH . M 4 HOH C 31 138 93 HOH HOH . M 4 HOH C 32 139 94 HOH HOH . M 4 HOH C 33 140 95 HOH HOH . M 4 HOH C 34 141 96 HOH HOH . M 4 HOH C 35 142 142 HOH HOH . M 4 HOH C 36 143 143 HOH HOH . M 4 HOH C 37 144 97 HOH HOH . N 4 HOH D 1 11 11 HOH HOH . N 4 HOH D 2 112 12 HOH HOH . N 4 HOH D 3 113 24 HOH HOH . N 4 HOH D 4 114 25 HOH HOH . N 4 HOH D 5 115 26 HOH HOH . N 4 HOH D 6 116 27 HOH HOH . N 4 HOH D 7 117 28 HOH HOH . N 4 HOH D 8 118 29 HOH HOH . N 4 HOH D 9 119 36 HOH HOH . N 4 HOH D 10 120 37 HOH HOH . N 4 HOH D 11 121 59 HOH HOH . N 4 HOH D 12 122 60 HOH HOH . N 4 HOH D 13 123 77 HOH HOH . N 4 HOH D 14 124 89 HOH HOH . N 4 HOH D 15 125 91 HOH HOH . N 4 HOH D 16 126 98 HOH HOH . N 4 HOH D 17 127 99 HOH HOH . N 4 HOH D 18 128 128 HOH HOH . N 4 HOH D 19 129 129 HOH HOH . N 4 HOH D 20 130 130 HOH HOH . N 4 HOH D 21 131 100 HOH HOH . N 4 HOH D 22 132 101 HOH HOH . N 4 HOH D 23 133 102 HOH HOH . N 4 HOH D 24 134 103 HOH HOH . N 4 HOH D 25 135 104 HOH HOH . N 4 HOH D 26 136 105 HOH HOH . N 4 HOH D 27 137 106 HOH HOH . N 4 HOH D 28 138 107 HOH HOH . N 4 HOH D 29 139 108 HOH HOH . N 4 HOH D 30 140 109 HOH HOH . N 4 HOH D 31 144 144 HOH HOH . N 4 HOH D 32 145 145 HOH HOH . N 4 HOH D 33 146 146 HOH HOH . N 4 HOH D 34 148 148 HOH HOH . N 4 HOH D 35 149 149 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 03M . . . H 2 -35.029 -8.387 -9.982 1 27.71 ? C4 03M 1 C 1 HETATM 2 C C6 03M . . . H 2 -36.361 -11.65 -10.904 1 24.35 ? C6 03M 1 C 1 HETATM 3 C C7 03M . . . H 2 -36.452 -10.292 -10.819 1 24.68 ? C7 03M 1 C 1 HETATM 4 C C8 03M . . . H 2 -35.356 -9.717 -10.238 1 26 ? C8 03M 1 C 1 HETATM 5 C C10 03M . . . H 2 -37.411 -9.398 -11.532 1 25.73 ? C10 03M 1 C 1 HETATM 6 N N12 03M . . . H 2 -38.974 -10.966 -12.757 1 26.06 ? N12 03M 1 C 1 HETATM 7 C C13 03M . . . H 2 -40.006 -10.686 -13.609 1 28.61 ? C13 03M 1 C 1 HETATM 8 C C15 03M . . . H 2 -39.325 -8.738 -13.171 1 27.28 ? C15 03M 1 C 1 HETATM 9 C C20 03M . . . H 2 -42.425 -7.11 -13.195 1 28.52 ? C20 03M 1 C 1 HETATM 10 C C21 03M . . . H 2 -43.54 -6.701 -12.475 1 30.64 ? C21 03M 1 C 1 HETATM 11 C C22 03M . . . H 2 -44.682 -7.495 -12.525 1 32.21 ? C22 03M 1 C 1 HETATM 12 C C24 03M . . . H 2 -43.602 -9.067 -14.013 1 28.02 ? C24 03M 1 C 1 HETATM 13 C C1 03M . . . H 2 -33.849 -8.143 -9.266 1 29.33 ? C1 03M 1 C 1 HETATM 14 C C2 03M . . . H 2 -33.121 -9.244 -8.853 1 23.99 ? C2 03M 1 C 1 HETATM 15 C C3 03M . . . H 2 -33.474 -10.56 -9.107 1 23.92 ? C3 03M 1 C 1 HETATM 16 N N5 03M . . . H 2 -35.234 -11.93 -10.208 1 22.67 ? N5 03M 1 C 1 HETATM 17 C C9 03M . . . H 2 -34.597 -10.798 -9.834 1 24.57 ? C9 03M 1 C 1 HETATM 18 C C11 03M . . . H 2 -38.515 -9.722 -12.438 1 27.78 ? C11 03M 1 C 1 HETATM 19 N N14 03M . . . H 2 -40.254 -9.377 -13.892 1 26.56 ? N14 03M 1 C 1 HETATM 20 O O16 03M . . . H 2 -40.689 -11.651 -14.157 1 29.97 ? O16 03M 1 C 1 HETATM 21 O O17 03M . . . H 2 -39.176 -7.444 -13.074 1 31.14 ? O17 03M 1 C 1 HETATM 22 C C18 03M . . . H 2 -41.269 -8.779 -14.744 1 28.17 ? C18 03M 1 C 1 HETATM 23 C C19 03M . . . H 2 -42.453 -8.283 -13.951 1 27.7 ? C19 03M 1 C 1 HETATM 24 C C23 03M . . . H 2 -44.708 -8.668 -13.288 1 30.81 ? C23 03M 1 C 1 HETATM 25 F F25 03M . . . H 2 -45.784 -9.44 -13.372 1 28.32 ? F25 03M 1 C 1 HETATM 26 F F26 03M . . . H 2 -45.773 -7.105 -11.877 1 39.53 ? F26 03M 1 C 1 HETATM 27 C C27 03M . . . H 2 -32.618 -11.738 -8.66 1 20.11 ? C27 03M 1 C 1 HETATM 28 CL CL 03M . . . H 2 -31.677 -8.886 -7.947 1 26.44 ? CL 03M 1 C 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 28 #