data_3U21 # _model_server_result.job_id SwiovOg0My33JdBqQIc4lQ _model_server_result.datetime_utc '2024-12-23 07:30:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3u21 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":500}' # _entry.id 3U21 # _exptl.entry_id 3U21 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3U21 _cell.length_a 60.942 _cell.length_b 60.942 _cell.length_c 130.839 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3U21 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PRO 28 A PRO 396 1_555 A N MSE 29 A MSE 397 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale2 A C MSE 29 A MSE 397 1_555 A N LEU 30 A LEU 398 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 A C PHE 83 A PHE 451 1_555 A N MLY 84 A MLY 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 A C MLY 84 A MLY 452 1_555 A N GLU 85 A GLU 453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 A C GLU 85 A GLU 453 1_555 A N MLY 86 A MLY 454 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale6 A C MLY 86 A MLY 454 1_555 A N THR 87 A THR 455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale7 A C TRP 90 A TRP 458 1_555 A N MLY 91 A MLY 459 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale8 A C MLY 91 A MLY 459 1_555 A N LEU 92 A LEU 460 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale9 A C GLU 100 A GLU 468 1_555 A N MLY 101 A MLY 469 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale10 A C MLY 101 A MLY 469 1_555 A N GLU 102 A GLU 470 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale11 A C THR 113 A THR 481 1_555 A N MLY 114 A MLY 482 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale12 A C MLY 114 A MLY 482 1_555 A N ASP 115 A ASP 483 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale13 B C PRO 28 B PRO 396 1_555 B N MSE 29 B MSE 397 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale14 B C MSE 29 B MSE 397 1_555 B N LEU 30 B LEU 398 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale15 B C PHE 83 B PHE 451 1_555 B N MLY 84 B MLY 452 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale16 B C MLY 84 B MLY 452 1_555 B N GLU 85 B GLU 453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale17 B C GLU 85 B GLU 453 1_555 B N MLY 86 B MLY 454 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale18 B C MLY 86 B MLY 454 1_555 B N THR 87 B THR 455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale19 B C TRP 90 B TRP 458 1_555 B N MLY 91 B MLY 459 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale20 B C MLY 91 B MLY 459 1_555 B N LEU 92 B LEU 460 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale21 B C GLU 100 B GLU 468 1_555 B N MLY 101 B MLY 469 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale22 B C MLY 101 B MLY 469 1_555 B N GLU 102 B GLU 470 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale23 B C THR 113 B THR 481 1_555 B N MLY 114 B MLY 482 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale24 B C MLY 114 B MLY 482 1_555 B N ASP 115 B ASP 483 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? metalc ? metalc1 A OD1 ASN 5 A ASN 373 1_555 C NA NA . A NA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? metalc ? metalc2 A O ILE 7 A ILE 375 1_555 C NA NA . A NA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.373 ? metalc ? metalc3 C NA NA . A NA 500 1_555 B OD1 ASN 5 B ASN 373 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.285 ? metalc ? metalc4 C NA NA . A NA 500 1_555 B O ILE 7 B ILE 375 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc5 C NA NA . A NA 500 1_555 E O HOH . B HOH 521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3U21 _atom_sites.fract_transf_matrix[1][1] 0.016409 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016409 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007643 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA A 1 500 500 NA NA . D 3 HOH A 1 501 501 HOH HOH . D 3 HOH A 2 502 502 HOH HOH . D 3 HOH A 3 503 503 HOH HOH . D 3 HOH A 4 504 504 HOH HOH . D 3 HOH A 5 505 505 HOH HOH . D 3 HOH A 6 506 506 HOH HOH . D 3 HOH A 7 507 507 HOH HOH . D 3 HOH A 8 508 508 HOH HOH . D 3 HOH A 9 509 509 HOH HOH . D 3 HOH A 10 511 511 HOH HOH . D 3 HOH A 11 523 523 HOH HOH . D 3 HOH A 12 524 524 HOH HOH . D 3 HOH A 13 525 525 HOH HOH . E 3 HOH B 1 510 510 HOH HOH . E 3 HOH B 2 512 512 HOH HOH . E 3 HOH B 3 513 513 HOH HOH . E 3 HOH B 4 514 514 HOH HOH . E 3 HOH B 5 515 515 HOH HOH . E 3 HOH B 6 516 516 HOH HOH . E 3 HOH B 7 517 517 HOH HOH . E 3 HOH B 8 518 518 HOH HOH . E 3 HOH B 9 519 519 HOH HOH . E 3 HOH B 10 520 520 HOH HOH . E 3 HOH B 11 521 521 HOH HOH . E 3 HOH B 12 522 522 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 53.353 _atom_site.Cartn_y 39.835 _atom_site.Cartn_z 64.918 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 33.62 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 500 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 46 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #