data_3U25
#
_model_server_result.job_id            RLO3I7fUMneHAn3OjsekRw 
_model_server_result.datetime_utc      '2024-10-18 17:21:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3u25 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":129}' 
#
_entry.id    3U25 
#
_exptl.entry_id    3U25 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              122.143 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3U25 
_cell.length_a            48.026 
_cell.length_b            56.33 
_cell.length_c            82.91 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3U25 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 2 A CYS 3 1_555 A SG CYS 25 A CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
disulf ? disulf2 B SG CYS 2 B CYS 3 1_555 B SG CYS 25 B CYS 26 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.954 ? 
metalc ? metalc1 C CU CU . A CU 1 1_555 A ND1 HIS 45 A HIS 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? 
metalc ? metalc2 C CU CU . A CU 1 1_555 A SG CYS 111 A CYS 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? 
metalc ? metalc3 C CU CU . A CU 1 1_555 A ND1 HIS 116 A HIS 117 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
metalc ? metalc4 B ND1 HIS 45 B HIS 46 1_555 E CU CU . B CU 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? 
metalc ? metalc5 B SG CYS 111 B CYS 112 1_555 E CU CU . B CU 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? 
metalc ? metalc6 B ND1 HIS 116 B HIS 117 1_555 E CU CU . B CU 129 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.99 ? 
#
_chem_comp.formula           'C4 H12 N O3 1' 
_chem_comp.formula_weight    122.143 
_chem_comp.id                TRS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'TRIS BUFFER' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C C1 TRS sing 334 n n 
C C2 TRS sing 335 n n 
C C3 TRS sing 336 n n 
C N TRS sing 337 n n 
C1 O1 TRS sing 338 n n 
C1 H11 TRS sing 339 n n 
C1 H12 TRS sing 340 n n 
C2 O2 TRS sing 341 n n 
C2 H21 TRS sing 342 n n 
C2 H22 TRS sing 343 n n 
C3 O3 TRS sing 344 n n 
C3 H31 TRS sing 345 n n 
C3 H32 TRS sing 346 n n 
N HN1 TRS sing 347 n n 
N HN2 TRS sing 348 n n 
N HN3 TRS sing 349 n n 
O1 HO1 TRS sing 350 n n 
O2 HO2 TRS sing 351 n n 
O3 HO3 TRS sing 352 n n 
#
_atom_sites.entry_id                     3U25 
_atom_sites.fract_transf_matrix[1][1]    0.020822 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017753 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012061 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 CU A 1 1 1 CU CU . 
D 3 TRS A 1 129 1 TRS TRS . 
E 2 CU B 1 129 2 CU CU . 
F 3 TRS B 1 1 1 TRS TRS . 
G 4 HOH A 1 130 130 HOH HOH . 
G 4 HOH A 2 131 131 HOH HOH . 
G 4 HOH A 3 132 1 HOH HOH . 
G 4 HOH A 4 133 2 HOH HOH . 
G 4 HOH A 5 134 134 HOH HOH . 
G 4 HOH A 6 135 4 HOH HOH . 
G 4 HOH A 7 136 5 HOH HOH . 
G 4 HOH A 8 137 6 HOH HOH . 
G 4 HOH A 9 138 138 HOH HOH . 
G 4 HOH A 10 139 139 HOH HOH . 
G 4 HOH A 11 140 8 HOH HOH . 
G 4 HOH A 12 141 9 HOH HOH . 
G 4 HOH A 13 142 142 HOH HOH . 
G 4 HOH A 14 143 11 HOH HOH . 
G 4 HOH A 15 144 144 HOH HOH . 
G 4 HOH A 16 145 145 HOH HOH . 
G 4 HOH A 17 146 16 HOH HOH . 
G 4 HOH A 18 147 147 HOH HOH . 
G 4 HOH A 19 148 17 HOH HOH . 
G 4 HOH A 20 149 19 HOH HOH . 
G 4 HOH A 21 150 150 HOH HOH . 
G 4 HOH A 22 151 151 HOH HOH . 
G 4 HOH A 23 152 152 HOH HOH . 
G 4 HOH A 24 153 20 HOH HOH . 
G 4 HOH A 25 154 21 HOH HOH . 
G 4 HOH A 26 155 22 HOH HOH . 
G 4 HOH A 27 156 156 HOH HOH . 
G 4 HOH A 28 157 23 HOH HOH . 
G 4 HOH A 29 158 25 HOH HOH . 
G 4 HOH A 30 159 27 HOH HOH . 
G 4 HOH A 31 160 160 HOH HOH . 
G 4 HOH A 32 161 28 HOH HOH . 
G 4 HOH A 33 162 162 HOH HOH . 
G 4 HOH A 34 163 33 HOH HOH . 
G 4 HOH A 35 164 35 HOH HOH . 
G 4 HOH A 36 165 36 HOH HOH . 
G 4 HOH A 37 166 38 HOH HOH . 
G 4 HOH A 38 167 40 HOH HOH . 
G 4 HOH A 39 168 41 HOH HOH . 
G 4 HOH A 40 169 169 HOH HOH . 
G 4 HOH A 41 170 44 HOH HOH . 
G 4 HOH A 42 171 171 HOH HOH . 
G 4 HOH A 43 172 45 HOH HOH . 
G 4 HOH A 44 173 173 HOH HOH . 
G 4 HOH A 45 174 46 HOH HOH . 
G 4 HOH A 46 175 175 HOH HOH . 
G 4 HOH A 47 176 48 HOH HOH . 
G 4 HOH A 48 177 49 HOH HOH . 
G 4 HOH A 49 178 50 HOH HOH . 
G 4 HOH A 50 179 51 HOH HOH . 
G 4 HOH A 51 180 180 HOH HOH . 
G 4 HOH A 52 181 53 HOH HOH . 
G 4 HOH A 53 182 55 HOH HOH . 
G 4 HOH A 54 183 183 HOH HOH . 
G 4 HOH A 55 184 58 HOH HOH . 
G 4 HOH A 56 185 185 HOH HOH . 
G 4 HOH A 57 186 59 HOH HOH . 
G 4 HOH A 58 187 61 HOH HOH . 
G 4 HOH A 59 188 188 HOH HOH . 
G 4 HOH A 60 189 63 HOH HOH . 
G 4 HOH A 61 190 65 HOH HOH . 
G 4 HOH A 62 191 191 HOH HOH . 
G 4 HOH A 63 192 192 HOH HOH . 
G 4 HOH A 64 193 67 HOH HOH . 
G 4 HOH A 65 194 70 HOH HOH . 
G 4 HOH A 66 195 71 HOH HOH . 
G 4 HOH A 67 196 196 HOH HOH . 
G 4 HOH A 68 197 74 HOH HOH . 
G 4 HOH A 69 198 75 HOH HOH . 
G 4 HOH A 70 199 78 HOH HOH . 
G 4 HOH A 71 200 82 HOH HOH . 
G 4 HOH A 72 201 201 HOH HOH . 
G 4 HOH A 73 202 83 HOH HOH . 
G 4 HOH A 74 203 84 HOH HOH . 
G 4 HOH A 75 204 85 HOH HOH . 
G 4 HOH A 76 205 205 HOH HOH . 
G 4 HOH A 77 206 206 HOH HOH . 
G 4 HOH A 78 207 207 HOH HOH . 
G 4 HOH A 79 208 87 HOH HOH . 
G 4 HOH A 80 209 88 HOH HOH . 
G 4 HOH A 81 210 91 HOH HOH . 
G 4 HOH A 82 211 93 HOH HOH . 
G 4 HOH A 83 212 94 HOH HOH . 
G 4 HOH A 84 213 96 HOH HOH . 
G 4 HOH A 85 214 97 HOH HOH . 
G 4 HOH A 86 215 98 HOH HOH . 
G 4 HOH A 87 216 101 HOH HOH . 
G 4 HOH A 88 217 217 HOH HOH . 
G 4 HOH A 89 218 102 HOH HOH . 
G 4 HOH A 90 219 103 HOH HOH . 
G 4 HOH A 91 220 104 HOH HOH . 
G 4 HOH A 92 221 105 HOH HOH . 
G 4 HOH A 93 222 222 HOH HOH . 
G 4 HOH A 94 223 106 HOH HOH . 
G 4 HOH A 95 224 224 HOH HOH . 
G 4 HOH A 96 225 109 HOH HOH . 
G 4 HOH A 97 226 111 HOH HOH . 
G 4 HOH A 98 227 227 HOH HOH . 
G 4 HOH A 99 228 112 HOH HOH . 
G 4 HOH A 100 229 120 HOH HOH . 
G 4 HOH A 101 230 123 HOH HOH . 
G 4 HOH A 102 231 127 HOH HOH . 
G 4 HOH A 103 232 232 HOH HOH . 
G 4 HOH A 104 234 234 HOH HOH . 
G 4 HOH A 105 241 241 HOH HOH . 
G 4 HOH A 106 243 243 HOH HOH . 
G 4 HOH A 107 245 245 HOH HOH . 
G 4 HOH A 108 252 252 HOH HOH . 
G 4 HOH A 109 257 257 HOH HOH . 
G 4 HOH A 110 260 260 HOH HOH . 
G 4 HOH A 111 270 270 HOH HOH . 
G 4 HOH A 112 272 272 HOH HOH . 
G 4 HOH A 113 273 273 HOH HOH . 
G 4 HOH A 114 276 276 HOH HOH . 
H 4 HOH B 1 130 3 HOH HOH . 
H 4 HOH B 2 131 7 HOH HOH . 
H 4 HOH B 3 132 10 HOH HOH . 
H 4 HOH B 4 133 133 HOH HOH . 
H 4 HOH B 5 134 12 HOH HOH . 
H 4 HOH B 6 135 135 HOH HOH . 
H 4 HOH B 7 136 136 HOH HOH . 
H 4 HOH B 8 137 137 HOH HOH . 
H 4 HOH B 9 138 13 HOH HOH . 
H 4 HOH B 10 139 14 HOH HOH . 
H 4 HOH B 11 140 140 HOH HOH . 
H 4 HOH B 12 141 141 HOH HOH . 
H 4 HOH B 13 142 15 HOH HOH . 
H 4 HOH B 14 143 143 HOH HOH . 
H 4 HOH B 15 144 24 HOH HOH . 
H 4 HOH B 16 145 26 HOH HOH . 
H 4 HOH B 17 146 146 HOH HOH . 
H 4 HOH B 18 147 29 HOH HOH . 
H 4 HOH B 19 148 148 HOH HOH . 
H 4 HOH B 20 149 149 HOH HOH . 
H 4 HOH B 21 150 30 HOH HOH . 
H 4 HOH B 22 151 31 HOH HOH . 
H 4 HOH B 23 152 32 HOH HOH . 
H 4 HOH B 24 153 153 HOH HOH . 
H 4 HOH B 25 154 34 HOH HOH . 
H 4 HOH B 26 155 155 HOH HOH . 
H 4 HOH B 27 156 37 HOH HOH . 
H 4 HOH B 28 157 39 HOH HOH . 
H 4 HOH B 29 158 42 HOH HOH . 
H 4 HOH B 30 159 159 HOH HOH . 
H 4 HOH B 31 160 43 HOH HOH . 
H 4 HOH B 32 161 161 HOH HOH . 
H 4 HOH B 33 162 47 HOH HOH . 
H 4 HOH B 34 163 163 HOH HOH . 
H 4 HOH B 35 164 164 HOH HOH . 
H 4 HOH B 36 165 52 HOH HOH . 
H 4 HOH B 37 166 166 HOH HOH . 
H 4 HOH B 38 167 167 HOH HOH . 
H 4 HOH B 39 168 56 HOH HOH . 
H 4 HOH B 40 169 57 HOH HOH . 
H 4 HOH B 41 170 62 HOH HOH . 
H 4 HOH B 42 171 64 HOH HOH . 
H 4 HOH B 43 172 172 HOH HOH . 
H 4 HOH B 44 173 68 HOH HOH . 
H 4 HOH B 45 174 72 HOH HOH . 
H 4 HOH B 46 175 73 HOH HOH . 
H 4 HOH B 47 176 176 HOH HOH . 
H 4 HOH B 48 177 77 HOH HOH . 
H 4 HOH B 49 178 80 HOH HOH . 
H 4 HOH B 50 179 86 HOH HOH . 
H 4 HOH B 51 180 89 HOH HOH . 
H 4 HOH B 52 181 90 HOH HOH . 
H 4 HOH B 53 182 182 HOH HOH . 
H 4 HOH B 54 183 95 HOH HOH . 
H 4 HOH B 55 184 184 HOH HOH . 
H 4 HOH B 56 185 100 HOH HOH . 
H 4 HOH B 57 186 186 HOH HOH . 
H 4 HOH B 58 187 107 HOH HOH . 
H 4 HOH B 59 188 108 HOH HOH . 
H 4 HOH B 60 189 189 HOH HOH . 
H 4 HOH B 61 190 190 HOH HOH . 
H 4 HOH B 62 191 113 HOH HOH . 
H 4 HOH B 63 192 115 HOH HOH . 
H 4 HOH B 64 193 116 HOH HOH . 
H 4 HOH B 65 194 194 HOH HOH . 
H 4 HOH B 66 195 195 HOH HOH . 
H 4 HOH B 67 196 117 HOH HOH . 
H 4 HOH B 68 197 197 HOH HOH . 
H 4 HOH B 69 198 198 HOH HOH . 
H 4 HOH B 70 199 118 HOH HOH . 
H 4 HOH B 71 200 119 HOH HOH . 
H 4 HOH B 72 201 122 HOH HOH . 
H 4 HOH B 73 202 202 HOH HOH . 
H 4 HOH B 74 203 203 HOH HOH . 
H 4 HOH B 75 204 204 HOH HOH . 
H 4 HOH B 76 205 125 HOH HOH . 
H 4 HOH B 77 206 128 HOH HOH . 
H 4 HOH B 78 209 209 HOH HOH . 
H 4 HOH B 79 210 210 HOH HOH . 
H 4 HOH B 80 220 220 HOH HOH . 
H 4 HOH B 81 225 225 HOH HOH . 
H 4 HOH B 82 226 226 HOH HOH . 
H 4 HOH B 83 228 228 HOH HOH . 
H 4 HOH B 84 233 233 HOH HOH . 
H 4 HOH B 85 235 235 HOH HOH . 
H 4 HOH B 86 240 240 HOH HOH . 
H 4 HOH B 87 246 246 HOH HOH . 
H 4 HOH B 88 248 248 HOH HOH . 
H 4 HOH B 89 253 253 HOH HOH . 
H 4 HOH B 90 255 255 HOH HOH . 
H 4 HOH B 91 256 256 HOH HOH . 
H 4 HOH B 92 258 258 HOH HOH . 
H 4 HOH B 93 259 259 HOH HOH . 
H 4 HOH B 94 261 261 HOH HOH . 
H 4 HOH B 95 262 262 HOH HOH . 
H 4 HOH B 96 263 263 HOH HOH . 
H 4 HOH B 97 264 264 HOH HOH . 
H 4 HOH B 98 265 265 HOH HOH . 
H 4 HOH B 99 266 266 HOH HOH . 
H 4 HOH B 100 267 267 HOH HOH . 
H 4 HOH B 101 268 268 HOH HOH . 
H 4 HOH B 102 269 269 HOH HOH . 
H 4 HOH B 103 271 271 HOH HOH . 
H 4 HOH B 104 274 274 HOH HOH . 
H 4 HOH B 105 275 275 HOH HOH . 
H 4 HOH B 106 277 277 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C TRS . . . D 3 7.754 19.063 -4.223 1 13.2 ? C TRS 129 A 1 
HETATM 2 C C1 TRS . . . D 3 7.861 17.628 -3.693 1 13.07 ? C1 TRS 129 A 1 
HETATM 3 C C2 TRS . . . D 3 6.328 19.323 -4.71 1 14.51 ? C2 TRS 129 A 1 
HETATM 4 C C3 TRS . . . D 3 8.11 20.036 -3.122 1 15.52 ? C3 TRS 129 A 1 
HETATM 5 N N TRS . . . D 3 8.651 19.232 -5.394 1 16.77 ? N TRS 129 A 1 
HETATM 6 O O1 TRS . . . D 3 6.948 16.568 -4.394 1 5.71 ? O1 TRS 129 A 1 
HETATM 7 O O2 TRS . . . D 3 5.327 19.163 -3.696 1 15.51 ? O2 TRS 129 A 1 
HETATM 8 O O3 TRS . . . D 3 9.379 19.719 -2.584 1 20.55 ? O3 TRS 129 A 1 
#
_model_server_stats.io_time_ms              49 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           268 
_model_server_stats.encode_time_ms          26 
_model_server_stats.element_count           8 
#