data_3U2G # _model_server_result.job_id kR8Tt4yVbTrMwy462rPsOA _model_server_result.datetime_utc '2024-11-05 00:37:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3u2g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":795}' # _entry.id 3U2G # _exptl.entry_id 3U2G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3U2G _cell.length_a 120.995 _cell.length_b 120.995 _cell.length_c 88.978 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3U2G _symmetry.cell_setting ? _symmetry.Int_Tables_number 177 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 6 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 60.4975 104.784744 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C VAL 80 A VAL 372 1_555 A N MSE 81 A MSE 373 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale2 A C MSE 81 A MSE 373 1_555 A N GLY 82 A GLY 374 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 A C GLU 116 A GLU 408 1_555 A N MSE 117 A MSE 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale4 A C MSE 117 A MSE 409 1_555 A N LEU 118 A LEU 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale5 A C ALA 211 A ALA 503 1_555 A N MSE 212 A MSE 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale6 A C MSE 212 A MSE 504 1_555 A N THR 213 A THR 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale7 A C GLY 254 A GLY 546 1_555 A N MSE 255 A MSE 547 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale8 A C MSE 255 A MSE 547 1_555 A N TYR 256 A TYR 548 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale9 A C PHE 257 A PHE 549 1_555 A N MSE 258 A MSE 550 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale10 A C MSE 258 A MSE 550 1_555 A N ILE 259 A ILE 551 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 136 n n C1 C2 GOL sing 137 n n C1 H11 GOL sing 138 n n C1 H12 GOL sing 139 n n O1 HO1 GOL sing 140 n n C2 O2 GOL sing 141 n n C2 C3 GOL sing 142 n n C2 H2 GOL sing 143 n n O2 HO2 GOL sing 144 n n C3 O3 GOL sing 145 n n C3 H31 GOL sing 146 n n C3 H32 GOL sing 147 n n O3 HO3 GOL sing 148 n n # _atom_sites.entry_id 3U2G _atom_sites.fract_transf_matrix[1][1] 0.008265 _atom_sites.fract_transf_matrix[1][2] 0.004772 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009543 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011239 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CIT A 1 793 793 CIT CIT . C 3 NH4 A 1 794 794 NH4 NH4 . D 4 GOL A 1 795 795 GOL GOL . E 4 GOL A 1 796 796 GOL GOL . F 5 HOH A 1 579 579 HOH HOH . F 5 HOH A 2 580 580 HOH HOH . F 5 HOH A 3 581 581 HOH HOH . F 5 HOH A 4 582 582 HOH HOH . F 5 HOH A 5 583 583 HOH HOH . F 5 HOH A 6 584 584 HOH HOH . F 5 HOH A 7 585 585 HOH HOH . F 5 HOH A 8 586 586 HOH HOH . F 5 HOH A 9 587 587 HOH HOH . F 5 HOH A 10 588 588 HOH HOH . F 5 HOH A 11 589 589 HOH HOH . F 5 HOH A 12 590 590 HOH HOH . F 5 HOH A 13 591 591 HOH HOH . F 5 HOH A 14 592 592 HOH HOH . F 5 HOH A 15 593 593 HOH HOH . F 5 HOH A 16 594 594 HOH HOH . F 5 HOH A 17 595 595 HOH HOH . F 5 HOH A 18 596 596 HOH HOH . F 5 HOH A 19 597 597 HOH HOH . F 5 HOH A 20 598 598 HOH HOH . F 5 HOH A 21 599 599 HOH HOH . F 5 HOH A 22 600 600 HOH HOH . F 5 HOH A 23 601 601 HOH HOH . F 5 HOH A 24 602 602 HOH HOH . F 5 HOH A 25 603 603 HOH HOH . F 5 HOH A 26 604 604 HOH HOH . F 5 HOH A 27 605 605 HOH HOH . F 5 HOH A 28 606 606 HOH HOH . F 5 HOH A 29 607 607 HOH HOH . F 5 HOH A 30 608 608 HOH HOH . F 5 HOH A 31 609 609 HOH HOH . F 5 HOH A 32 610 610 HOH HOH . F 5 HOH A 33 611 611 HOH HOH . F 5 HOH A 34 612 612 HOH HOH . F 5 HOH A 35 613 613 HOH HOH . F 5 HOH A 36 614 614 HOH HOH . F 5 HOH A 37 615 615 HOH HOH . F 5 HOH A 38 616 616 HOH HOH . F 5 HOH A 39 617 617 HOH HOH . F 5 HOH A 40 618 618 HOH HOH . F 5 HOH A 41 619 619 HOH HOH . F 5 HOH A 42 620 620 HOH HOH . F 5 HOH A 43 621 621 HOH HOH . F 5 HOH A 44 622 622 HOH HOH . F 5 HOH A 45 623 623 HOH HOH . F 5 HOH A 46 624 624 HOH HOH . F 5 HOH A 47 625 625 HOH HOH . F 5 HOH A 48 626 626 HOH HOH . F 5 HOH A 49 627 627 HOH HOH . F 5 HOH A 50 628 628 HOH HOH . F 5 HOH A 51 629 629 HOH HOH . F 5 HOH A 52 630 630 HOH HOH . F 5 HOH A 53 631 631 HOH HOH . F 5 HOH A 54 632 632 HOH HOH . F 5 HOH A 55 633 633 HOH HOH . F 5 HOH A 56 634 634 HOH HOH . F 5 HOH A 57 635 635 HOH HOH . F 5 HOH A 58 636 636 HOH HOH . F 5 HOH A 59 637 637 HOH HOH . F 5 HOH A 60 638 638 HOH HOH . F 5 HOH A 61 639 639 HOH HOH . F 5 HOH A 62 640 640 HOH HOH . F 5 HOH A 63 641 641 HOH HOH . F 5 HOH A 64 642 642 HOH HOH . F 5 HOH A 65 643 643 HOH HOH . F 5 HOH A 66 644 644 HOH HOH . F 5 HOH A 67 645 645 HOH HOH . F 5 HOH A 68 646 646 HOH HOH . F 5 HOH A 69 647 647 HOH HOH . F 5 HOH A 70 648 648 HOH HOH . F 5 HOH A 71 649 649 HOH HOH . F 5 HOH A 72 650 650 HOH HOH . F 5 HOH A 73 651 651 HOH HOH . F 5 HOH A 74 652 652 HOH HOH . F 5 HOH A 75 653 653 HOH HOH . F 5 HOH A 76 654 654 HOH HOH . F 5 HOH A 77 655 655 HOH HOH . F 5 HOH A 78 656 656 HOH HOH . F 5 HOH A 79 657 657 HOH HOH . F 5 HOH A 80 658 658 HOH HOH . F 5 HOH A 81 659 659 HOH HOH . F 5 HOH A 82 660 660 HOH HOH . F 5 HOH A 83 661 661 HOH HOH . F 5 HOH A 84 662 662 HOH HOH . F 5 HOH A 85 663 663 HOH HOH . F 5 HOH A 86 664 664 HOH HOH . F 5 HOH A 87 665 665 HOH HOH . F 5 HOH A 88 666 666 HOH HOH . F 5 HOH A 89 667 667 HOH HOH . F 5 HOH A 90 668 668 HOH HOH . F 5 HOH A 91 669 669 HOH HOH . F 5 HOH A 92 670 670 HOH HOH . F 5 HOH A 93 671 671 HOH HOH . F 5 HOH A 94 672 672 HOH HOH . F 5 HOH A 95 673 673 HOH HOH . F 5 HOH A 96 674 674 HOH HOH . F 5 HOH A 97 675 675 HOH HOH . F 5 HOH A 98 676 676 HOH HOH . F 5 HOH A 99 677 677 HOH HOH . F 5 HOH A 100 678 678 HOH HOH . F 5 HOH A 101 679 679 HOH HOH . F 5 HOH A 102 680 680 HOH HOH . F 5 HOH A 103 681 681 HOH HOH . F 5 HOH A 104 682 682 HOH HOH . F 5 HOH A 105 683 683 HOH HOH . F 5 HOH A 106 684 684 HOH HOH . F 5 HOH A 107 685 685 HOH HOH . F 5 HOH A 108 686 686 HOH HOH . F 5 HOH A 109 687 687 HOH HOH . F 5 HOH A 110 688 688 HOH HOH . F 5 HOH A 111 689 689 HOH HOH . F 5 HOH A 112 690 690 HOH HOH . F 5 HOH A 113 691 691 HOH HOH . F 5 HOH A 114 692 692 HOH HOH . F 5 HOH A 115 693 693 HOH HOH . F 5 HOH A 116 694 694 HOH HOH . F 5 HOH A 117 695 695 HOH HOH . F 5 HOH A 118 696 696 HOH HOH . F 5 HOH A 119 697 697 HOH HOH . F 5 HOH A 120 698 698 HOH HOH . F 5 HOH A 121 699 699 HOH HOH . F 5 HOH A 122 700 700 HOH HOH . F 5 HOH A 123 701 701 HOH HOH . F 5 HOH A 124 702 702 HOH HOH . F 5 HOH A 125 703 703 HOH HOH . F 5 HOH A 126 704 704 HOH HOH . F 5 HOH A 127 705 705 HOH HOH . F 5 HOH A 128 706 706 HOH HOH . F 5 HOH A 129 707 707 HOH HOH . F 5 HOH A 130 708 708 HOH HOH . F 5 HOH A 131 709 709 HOH HOH . F 5 HOH A 132 710 710 HOH HOH . F 5 HOH A 133 711 711 HOH HOH . F 5 HOH A 134 712 712 HOH HOH . F 5 HOH A 135 713 713 HOH HOH . F 5 HOH A 136 714 714 HOH HOH . F 5 HOH A 137 715 715 HOH HOH . F 5 HOH A 138 716 716 HOH HOH . F 5 HOH A 139 717 717 HOH HOH . F 5 HOH A 140 718 718 HOH HOH . F 5 HOH A 141 719 719 HOH HOH . F 5 HOH A 142 720 720 HOH HOH . F 5 HOH A 143 721 721 HOH HOH . F 5 HOH A 144 722 722 HOH HOH . F 5 HOH A 145 723 723 HOH HOH . F 5 HOH A 146 724 724 HOH HOH . F 5 HOH A 147 725 725 HOH HOH . F 5 HOH A 148 726 726 HOH HOH . F 5 HOH A 149 727 727 HOH HOH . F 5 HOH A 150 728 728 HOH HOH . F 5 HOH A 151 729 729 HOH HOH . F 5 HOH A 152 730 730 HOH HOH . F 5 HOH A 153 731 731 HOH HOH . F 5 HOH A 154 732 732 HOH HOH . F 5 HOH A 155 733 733 HOH HOH . F 5 HOH A 156 734 734 HOH HOH . F 5 HOH A 157 735 735 HOH HOH . F 5 HOH A 158 736 736 HOH HOH . F 5 HOH A 159 737 737 HOH HOH . F 5 HOH A 160 738 738 HOH HOH . F 5 HOH A 161 739 739 HOH HOH . F 5 HOH A 162 740 740 HOH HOH . F 5 HOH A 163 741 741 HOH HOH . F 5 HOH A 164 742 742 HOH HOH . F 5 HOH A 165 743 743 HOH HOH . F 5 HOH A 166 744 744 HOH HOH . F 5 HOH A 167 745 745 HOH HOH . F 5 HOH A 168 746 746 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 4 25.843 59.776 4.202 1 34.38 ? C1 GOL 795 A 1 HETATM 2 O O1 GOL . . . D 4 25.27 59.785 2.889 1 28.89 ? O1 GOL 795 A 1 HETATM 3 C C2 GOL . . . D 4 27.196 59.049 4.32 1 35.98 ? C2 GOL 795 A 1 HETATM 4 O O2 GOL . . . D 4 28.257 59.811 3.776 1 37.73 ? O2 GOL 795 A 1 HETATM 5 C C3 GOL . . . D 4 27.122 57.725 3.579 1 38.1 ? C3 GOL 795 A 1 HETATM 6 O O3 GOL . . . D 4 26.06 56.984 4.138 1 40.36 ? O3 GOL 795 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 243 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #