data_3U2M # _model_server_result.job_id 9CxumDF7O_Ol85NJz6RZwQ _model_server_result.datetime_utc '2025-07-01 11:55:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3u2m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 3U2M # _exptl.entry_id 3U2M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 785.55 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN-ADENINE DINUCLEOTIDE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3U2M _cell.length_a 50.4 _cell.length_b 76.88 _cell.length_c 62.46 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3U2M _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1 0 0 0 1 0 0 0 -1 0 0 31.23 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 5 A CYS 95 1_555 A SG CYS 114 A CYS 204 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.202 ? disulf ? disulf2 A SG CYS 81 A CYS 171 1_555 A SG CYS 98 A CYS 188 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? # _chem_comp.formula 'C27 H33 N9 O15 P2' _chem_comp.formula_weight 785.55 _chem_comp.id FAD _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN-ADENINE DINUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A FAD doub 83 n n PA O2A FAD sing 84 n n PA O5B FAD sing 85 n n PA O3P FAD sing 86 n n O2A HOA2 FAD sing 87 n n O5B C5B FAD sing 88 n n C5B C4B FAD sing 89 n n C5B H51A FAD sing 90 n n C5B H52A FAD sing 91 n n C4B O4B FAD sing 92 n n C4B C3B FAD sing 93 n n C4B H4B FAD sing 94 n n O4B C1B FAD sing 95 n n C3B O3B FAD sing 96 n n C3B C2B FAD sing 97 n n C3B H3B FAD sing 98 n n O3B HO3A FAD sing 99 n n C2B O2B FAD sing 100 n n C2B C1B FAD sing 101 n n C2B H2B FAD sing 102 n n O2B HO2A FAD sing 103 n n C1B N9A FAD sing 104 n n C1B H1B FAD sing 105 n n N9A C8A FAD sing 106 n y N9A C4A FAD sing 107 n y C8A N7A FAD doub 108 n y C8A H8A FAD sing 109 n n N7A C5A FAD sing 110 n y C5A C6A FAD sing 111 n y C5A C4A FAD doub 112 n y C6A N6A FAD sing 113 n n C6A N1A FAD doub 114 n y N6A H61A FAD sing 115 n n N6A H62A FAD sing 116 n n N1A C2A FAD sing 117 n y C2A N3A FAD doub 118 n y C2A H2A FAD sing 119 n n N3A C4A FAD sing 120 n y N1 C2 FAD sing 121 n n N1 C10 FAD doub 122 n n C2 O2 FAD doub 123 n n C2 N3 FAD sing 124 n n N3 C4 FAD sing 125 n n N3 HN3 FAD sing 126 n n C4 O4 FAD doub 127 n n C4 C4X FAD sing 128 n n C4X N5 FAD doub 129 n n C4X C10 FAD sing 130 n n N5 C5X FAD sing 131 n n C5X C6 FAD doub 132 n y C5X C9A FAD sing 133 n y C6 C7 FAD sing 134 n y C6 H6 FAD sing 135 n n C7 C7M FAD sing 136 n n C7 C8 FAD doub 137 n y C7M HM71 FAD sing 138 n n C7M HM72 FAD sing 139 n n C7M HM73 FAD sing 140 n n C8 C8M FAD sing 141 n n C8 C9 FAD sing 142 n y C8M HM81 FAD sing 143 n n C8M HM82 FAD sing 144 n n C8M HM83 FAD sing 145 n n C9 C9A FAD doub 146 n y C9 H9 FAD sing 147 n n C9A N10 FAD sing 148 n n N10 C10 FAD sing 149 n n N10 C1' FAD sing 150 n n C1' C2' FAD sing 151 n n C1' "H1'1" FAD sing 152 n n C1' "H1'2" FAD sing 153 n n C2' O2' FAD sing 154 n n C2' C3' FAD sing 155 n n C2' H2' FAD sing 156 n n O2' HO2' FAD sing 157 n n C3' O3' FAD sing 158 n n C3' C4' FAD sing 159 n n C3' H3' FAD sing 160 n n O3' HO3' FAD sing 161 n n C4' O4' FAD sing 162 n n C4' C5' FAD sing 163 n n C4' H4' FAD sing 164 n n O4' HO4' FAD sing 165 n n C5' O5' FAD sing 166 n n C5' "H5'1" FAD sing 167 n n C5' "H5'2" FAD sing 168 n n O5' P FAD sing 169 n n P O1P FAD doub 170 n n P O2P FAD sing 171 n n P O3P FAD sing 172 n n O2P HOP2 FAD sing 173 n n # _atom_sites.entry_id 3U2M _atom_sites.fract_transf_matrix[1][1] 0.019841 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013007 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01601 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 301 0 FAD FAD . C 3 HOH A 1 401 1 HOH HOH . C 3 HOH A 2 402 2 HOH HOH . C 3 HOH A 3 403 3 HOH HOH . C 3 HOH A 4 404 4 HOH HOH . C 3 HOH A 5 405 5 HOH HOH . C 3 HOH A 6 406 6 HOH HOH . C 3 HOH A 7 407 7 HOH HOH . C 3 HOH A 8 408 8 HOH HOH . C 3 HOH A 9 409 9 HOH HOH . C 3 HOH A 10 410 10 HOH HOH . C 3 HOH A 11 411 11 HOH HOH . C 3 HOH A 12 412 12 HOH HOH . C 3 HOH A 13 413 13 HOH HOH . C 3 HOH A 14 414 14 HOH HOH . C 3 HOH A 15 415 15 HOH HOH . C 3 HOH A 16 416 16 HOH HOH . C 3 HOH A 17 417 18 HOH HOH . C 3 HOH A 18 418 19 HOH HOH . C 3 HOH A 19 419 20 HOH HOH . C 3 HOH A 20 420 21 HOH HOH . C 3 HOH A 21 421 22 HOH HOH . C 3 HOH A 22 422 23 HOH HOH . C 3 HOH A 23 423 24 HOH HOH . C 3 HOH A 24 424 25 HOH HOH . C 3 HOH A 25 425 26 HOH HOH . C 3 HOH A 26 426 27 HOH HOH . C 3 HOH A 27 427 28 HOH HOH . C 3 HOH A 28 428 29 HOH HOH . C 3 HOH A 29 429 30 HOH HOH . C 3 HOH A 30 430 31 HOH HOH . C 3 HOH A 31 431 32 HOH HOH . C 3 HOH A 32 432 33 HOH HOH . C 3 HOH A 33 433 34 HOH HOH . C 3 HOH A 34 434 35 HOH HOH . C 3 HOH A 35 435 37 HOH HOH . C 3 HOH A 36 436 39 HOH HOH . C 3 HOH A 37 437 40 HOH HOH . C 3 HOH A 38 438 41 HOH HOH . C 3 HOH A 39 439 42 HOH HOH . C 3 HOH A 40 440 43 HOH HOH . C 3 HOH A 41 441 44 HOH HOH . C 3 HOH A 42 442 45 HOH HOH . C 3 HOH A 43 443 46 HOH HOH . C 3 HOH A 44 444 47 HOH HOH . C 3 HOH A 45 445 48 HOH HOH . C 3 HOH A 46 446 49 HOH HOH . C 3 HOH A 47 447 50 HOH HOH . C 3 HOH A 48 448 51 HOH HOH . C 3 HOH A 49 449 52 HOH HOH . C 3 HOH A 50 450 53 HOH HOH . C 3 HOH A 51 451 54 HOH HOH . C 3 HOH A 52 452 55 HOH HOH . C 3 HOH A 53 453 56 HOH HOH . C 3 HOH A 54 454 57 HOH HOH . C 3 HOH A 55 455 58 HOH HOH . C 3 HOH A 56 456 59 HOH HOH . C 3 HOH A 57 457 60 HOH HOH . C 3 HOH A 58 458 61 HOH HOH . C 3 HOH A 59 459 62 HOH HOH . C 3 HOH A 60 460 63 HOH HOH . C 3 HOH A 61 461 64 HOH HOH . C 3 HOH A 62 462 66 HOH HOH . C 3 HOH A 63 463 67 HOH HOH . C 3 HOH A 64 464 68 HOH HOH . C 3 HOH A 65 465 69 HOH HOH . C 3 HOH A 66 466 72 HOH HOH . C 3 HOH A 67 467 73 HOH HOH . C 3 HOH A 68 468 74 HOH HOH . C 3 HOH A 69 469 75 HOH HOH . C 3 HOH A 70 470 76 HOH HOH . C 3 HOH A 71 471 77 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA FAD . . . B 2 -6.797 -28.934 7.58 1 10.04 ? PA FAD 301 A 1 HETATM 2 O O1A FAD . . . B 2 -5.331 -28.746 7.996 1 10.57 ? O1A FAD 301 A 1 HETATM 3 O O2A FAD . . . B 2 -7.24 -28.083 6.4 1 13.14 ? O2A FAD 301 A 1 HETATM 4 O O5B FAD . . . B 2 -7.823 -28.812 8.835 1 12.06 ? O5B FAD 301 A 1 HETATM 5 C C5B FAD . . . B 2 -7.387 -29.366 10.062 1 7.43 ? C5B FAD 301 A 1 HETATM 6 C C4B FAD . . . B 2 -8.631 -29.774 10.83 1 13.13 ? C4B FAD 301 A 1 HETATM 7 O O4B FAD . . . B 2 -9.409 -28.643 11.019 1 11.64 ? O4B FAD 301 A 1 HETATM 8 C C3B FAD . . . B 2 -9.562 -30.779 10.126 1 12.65 ? C3B FAD 301 A 1 HETATM 9 O O3B FAD . . . B 2 -9.149 -32.053 10.499 1 12.77 ? O3B FAD 301 A 1 HETATM 10 C C2B FAD . . . B 2 -10.963 -30.453 10.633 1 13.34 ? C2B FAD 301 A 1 HETATM 11 O O2B FAD . . . B 2 -11.153 -31.141 11.87 1 11.73 ? O2B FAD 301 A 1 HETATM 12 C C1B FAD . . . B 2 -10.794 -28.96 10.958 1 10.46 ? C1B FAD 301 A 1 HETATM 13 N N9A FAD . . . B 2 -11.382 -28.05 9.941 1 11.49 ? N9A FAD 301 A 1 HETATM 14 C C8A FAD . . . B 2 -11.324 -28.206 8.573 1 8.48 ? C8A FAD 301 A 1 HETATM 15 N N7A FAD . . . B 2 -11.994 -27.163 8.041 1 8.24 ? N7A FAD 301 A 1 HETATM 16 C C5A FAD . . . B 2 -12.433 -26.36 9.051 1 5.22 ? C5A FAD 301 A 1 HETATM 17 C C6A FAD . . . B 2 -13.2 -25.245 9.081 1 3.6 ? C6A FAD 301 A 1 HETATM 18 N N6A FAD . . . B 2 -13.516 -24.645 7.971 1 10.18 ? N6A FAD 301 A 1 HETATM 19 N N1A FAD . . . B 2 -13.489 -24.604 10.281 1 12.58 ? N1A FAD 301 A 1 HETATM 20 C C2A FAD . . . B 2 -13.132 -25.165 11.48 1 8.05 ? C2A FAD 301 A 1 HETATM 21 N N3A FAD . . . B 2 -12.406 -26.326 11.444 1 10.64 ? N3A FAD 301 A 1 HETATM 22 C C4A FAD . . . B 2 -12.031 -26.89 10.235 1 6.99 ? C4A FAD 301 A 1 HETATM 23 N N1 FAD . . . B 2 -2.373 -25.302 1.594 1 17.02 ? N1 FAD 301 A 1 HETATM 24 C C2 FAD . . . B 2 -2.272 -25.219 0.215 1 19.15 ? C2 FAD 301 A 1 HETATM 25 O O2 FAD . . . B 2 -1.93 -26.232 -0.426 1 17.34 ? O2 FAD 301 A 1 HETATM 26 N N3 FAD . . . B 2 -2.519 -24.016 -0.407 1 12.44 ? N3 FAD 301 A 1 HETATM 27 C C4 FAD . . . B 2 -2.842 -22.9 0.304 1 17.12 ? C4 FAD 301 A 1 HETATM 28 O O4 FAD . . . B 2 -3.051 -21.834 -0.295 1 15.77 ? O4 FAD 301 A 1 HETATM 29 C C4X FAD . . . B 2 -2.948 -22.991 1.706 1 15.82 ? C4X FAD 301 A 1 HETATM 30 N N5 FAD . . . B 2 -3.269 -21.888 2.462 1 18 ? N5 FAD 301 A 1 HETATM 31 C C5X FAD . . . B 2 -3.326 -22.005 3.842 1 14.91 ? C5X FAD 301 A 1 HETATM 32 C C6 FAD . . . B 2 -3.657 -20.894 4.601 1 15.78 ? C6 FAD 301 A 1 HETATM 33 C C7 FAD . . . B 2 -3.728 -21.019 5.997 1 12.72 ? C7 FAD 301 A 1 HETATM 34 C C7M FAD . . . B 2 -4.076 -19.819 6.818 1 11.25 ? C7M FAD 301 A 1 HETATM 35 C C8 FAD . . . B 2 -3.476 -22.256 6.611 1 10.89 ? C8 FAD 301 A 1 HETATM 36 C C8M FAD . . . B 2 -3.552 -22.378 8.115 1 6.97 ? C8M FAD 301 A 1 HETATM 37 C C9 FAD . . . B 2 -3.142 -23.361 5.853 1 11.63 ? C9 FAD 301 A 1 HETATM 38 C C9A FAD . . . B 2 -3.066 -23.239 4.467 1 12.3 ? C9A FAD 301 A 1 HETATM 39 N N10 FAD . . . B 2 -2.765 -24.333 3.706 1 11.38 ? N10 FAD 301 A 1 HETATM 40 C C10 FAD . . . B 2 -2.698 -24.199 2.334 1 13 ? C10 FAD 301 A 1 HETATM 41 C C1' FAD . . . B 2 -2.557 -25.709 4.317 1 11.16 ? C1' FAD 301 A 1 HETATM 42 C C2' FAD . . . B 2 -3.904 -26.484 4.227 1 8.91 ? C2' FAD 301 A 1 HETATM 43 O O2' FAD . . . B 2 -5.069 -25.697 4.448 1 12.31 ? O2' FAD 301 A 1 HETATM 44 C C3' FAD . . . B 2 -4.118 -27.685 5.189 1 10.64 ? C3' FAD 301 A 1 HETATM 45 O O3' FAD . . . B 2 -3.843 -27.248 6.496 1 14.31 ? O3' FAD 301 A 1 HETATM 46 C C4' FAD . . . B 2 -3.305 -28.936 4.792 1 13.66 ? C4' FAD 301 A 1 HETATM 47 O O4' FAD . . . B 2 -3.525 -29.112 3.389 1 14.94 ? O4' FAD 301 A 1 HETATM 48 C C5' FAD . . . B 2 -3.653 -30.199 5.597 1 13.74 ? C5' FAD 301 A 1 HETATM 49 O O5' FAD . . . B 2 -5.039 -30.41 5.391 1 14.47 ? O5' FAD 301 A 1 HETATM 50 P P FAD . . . B 2 -5.964 -31.356 6.287 1 15.71 ? P FAD 301 A 1 HETATM 51 O O1P FAD . . . B 2 -6.819 -32.238 5.408 1 15.39 ? O1P FAD 301 A 1 HETATM 52 O O2P FAD . . . B 2 -5.174 -32.226 7.207 1 12.61 ? O2P FAD 301 A 1 HETATM 53 O O3P FAD . . . B 2 -7.012 -30.504 7.211 1 12.61 ? O3P FAD 301 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 4 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 239 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 53 #