data_3U2O # _model_server_result.job_id cdNjM9Qs5VGr11UmGJp7iQ _model_server_result.datetime_utc '2024-12-21 16:19:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3u2o # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 3U2O # _exptl.entry_id 3U2O _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 156.096 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'OROTIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3U2O _cell.length_a 91.028 _cell.length_b 91.028 _cell.length_c 122.465 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3U2O _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C5 H4 N2 O4' _chem_comp.formula_weight 156.096 _chem_comp.id ORO _chem_comp.mon_nstd_flag . _chem_comp.name 'OROTIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 ORO sing 329 n y N1 C6 ORO sing 330 n y N1 HN1 ORO sing 331 n n C2 O2 ORO doub 332 n n C2 N3 ORO sing 333 n y N3 C4 ORO sing 334 n y N3 HN3 ORO sing 335 n n C4 O4 ORO doub 336 n n C4 C5 ORO sing 337 n y C5 C6 ORO doub 338 n y C5 H5 ORO sing 339 n n C6 C7 ORO sing 340 n n C7 O71 ORO doub 341 n n C7 O72 ORO sing 342 n n O72 HO7 ORO sing 343 n n # _atom_sites.entry_id 3U2O _atom_sites.fract_transf_matrix[1][1] 0.010986 _atom_sites.fract_transf_matrix[1][2] 0.006343 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012685 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008166 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FMN A 1 500 500 FMN FMN . C 3 ORO A 1 501 501 ORO ORO . D 4 03U A 1 1 1 03U 03U . E 5 ACT A 1 397 1 ACT ACT . F 5 ACT A 1 398 2 ACT ACT . G 5 ACT A 1 399 3 ACT ACT . H 6 SO4 A 1 400 1 SO4 SO4 . I 6 SO4 A 1 401 2 SO4 SO4 . J 7 HOH A 1 402 1 HOH HOH . J 7 HOH A 2 403 2 HOH HOH . J 7 HOH A 3 404 3 HOH HOH . J 7 HOH A 4 405 4 HOH HOH . J 7 HOH A 5 406 5 HOH HOH . J 7 HOH A 6 407 6 HOH HOH . J 7 HOH A 7 408 7 HOH HOH . J 7 HOH A 8 409 8 HOH HOH . J 7 HOH A 9 410 9 HOH HOH . J 7 HOH A 10 411 10 HOH HOH . J 7 HOH A 11 412 11 HOH HOH . J 7 HOH A 12 413 12 HOH HOH . J 7 HOH A 13 414 13 HOH HOH . J 7 HOH A 14 415 14 HOH HOH . J 7 HOH A 15 416 15 HOH HOH . J 7 HOH A 16 417 16 HOH HOH . J 7 HOH A 17 418 17 HOH HOH . J 7 HOH A 18 419 18 HOH HOH . J 7 HOH A 19 420 19 HOH HOH . J 7 HOH A 20 421 20 HOH HOH . J 7 HOH A 21 422 21 HOH HOH . J 7 HOH A 22 423 22 HOH HOH . J 7 HOH A 23 424 23 HOH HOH . J 7 HOH A 24 425 24 HOH HOH . J 7 HOH A 25 426 25 HOH HOH . J 7 HOH A 26 427 26 HOH HOH . J 7 HOH A 27 428 27 HOH HOH . J 7 HOH A 28 429 28 HOH HOH . J 7 HOH A 29 430 29 HOH HOH . J 7 HOH A 30 431 30 HOH HOH . J 7 HOH A 31 432 31 HOH HOH . J 7 HOH A 32 433 32 HOH HOH . J 7 HOH A 33 434 33 HOH HOH . J 7 HOH A 34 435 34 HOH HOH . J 7 HOH A 35 436 35 HOH HOH . J 7 HOH A 36 437 36 HOH HOH . J 7 HOH A 37 438 37 HOH HOH . J 7 HOH A 38 439 38 HOH HOH . J 7 HOH A 39 440 39 HOH HOH . J 7 HOH A 40 441 40 HOH HOH . J 7 HOH A 41 442 41 HOH HOH . J 7 HOH A 42 443 42 HOH HOH . J 7 HOH A 43 444 43 HOH HOH . J 7 HOH A 44 445 44 HOH HOH . J 7 HOH A 45 446 45 HOH HOH . J 7 HOH A 46 447 46 HOH HOH . J 7 HOH A 47 448 47 HOH HOH . J 7 HOH A 48 449 48 HOH HOH . J 7 HOH A 49 450 49 HOH HOH . J 7 HOH A 50 451 50 HOH HOH . J 7 HOH A 51 452 51 HOH HOH . J 7 HOH A 52 453 52 HOH HOH . J 7 HOH A 53 454 53 HOH HOH . J 7 HOH A 54 455 54 HOH HOH . J 7 HOH A 55 456 55 HOH HOH . J 7 HOH A 56 457 56 HOH HOH . J 7 HOH A 57 458 57 HOH HOH . J 7 HOH A 58 459 58 HOH HOH . J 7 HOH A 59 460 59 HOH HOH . J 7 HOH A 60 461 60 HOH HOH . J 7 HOH A 61 462 61 HOH HOH . J 7 HOH A 62 463 62 HOH HOH . J 7 HOH A 63 464 63 HOH HOH . J 7 HOH A 64 465 64 HOH HOH . J 7 HOH A 65 466 65 HOH HOH . J 7 HOH A 66 467 66 HOH HOH . J 7 HOH A 67 468 67 HOH HOH . J 7 HOH A 68 469 68 HOH HOH . J 7 HOH A 69 470 69 HOH HOH . J 7 HOH A 70 471 70 HOH HOH . J 7 HOH A 71 472 71 HOH HOH . J 7 HOH A 72 473 72 HOH HOH . J 7 HOH A 73 474 73 HOH HOH . J 7 HOH A 74 475 74 HOH HOH . J 7 HOH A 75 476 75 HOH HOH . J 7 HOH A 76 477 76 HOH HOH . J 7 HOH A 77 478 77 HOH HOH . J 7 HOH A 78 479 78 HOH HOH . J 7 HOH A 79 480 79 HOH HOH . J 7 HOH A 80 481 80 HOH HOH . J 7 HOH A 81 482 81 HOH HOH . J 7 HOH A 82 483 82 HOH HOH . J 7 HOH A 83 484 83 HOH HOH . J 7 HOH A 84 485 84 HOH HOH . J 7 HOH A 85 486 85 HOH HOH . J 7 HOH A 86 487 86 HOH HOH . J 7 HOH A 87 488 87 HOH HOH . J 7 HOH A 88 489 88 HOH HOH . J 7 HOH A 89 490 89 HOH HOH . J 7 HOH A 90 491 90 HOH HOH . J 7 HOH A 91 492 91 HOH HOH . J 7 HOH A 92 493 92 HOH HOH . J 7 HOH A 93 494 93 HOH HOH . J 7 HOH A 94 495 94 HOH HOH . J 7 HOH A 95 496 95 HOH HOH . J 7 HOH A 96 497 96 HOH HOH . J 7 HOH A 97 498 97 HOH HOH . J 7 HOH A 98 499 98 HOH HOH . J 7 HOH A 99 502 99 HOH HOH . J 7 HOH A 100 503 100 HOH HOH . J 7 HOH A 101 504 101 HOH HOH . J 7 HOH A 102 505 102 HOH HOH . J 7 HOH A 103 506 103 HOH HOH . J 7 HOH A 104 507 104 HOH HOH . J 7 HOH A 105 508 105 HOH HOH . J 7 HOH A 106 509 106 HOH HOH . J 7 HOH A 107 510 107 HOH HOH . J 7 HOH A 108 511 108 HOH HOH . J 7 HOH A 109 512 109 HOH HOH . J 7 HOH A 110 513 110 HOH HOH . J 7 HOH A 111 514 111 HOH HOH . J 7 HOH A 112 515 112 HOH HOH . J 7 HOH A 113 516 113 HOH HOH . J 7 HOH A 114 517 114 HOH HOH . J 7 HOH A 115 518 115 HOH HOH . J 7 HOH A 116 519 116 HOH HOH . J 7 HOH A 117 520 117 HOH HOH . J 7 HOH A 118 521 118 HOH HOH . J 7 HOH A 119 522 119 HOH HOH . J 7 HOH A 120 523 120 HOH HOH . J 7 HOH A 121 524 121 HOH HOH . J 7 HOH A 122 525 122 HOH HOH . J 7 HOH A 123 526 123 HOH HOH . J 7 HOH A 124 527 124 HOH HOH . J 7 HOH A 125 528 125 HOH HOH . J 7 HOH A 126 529 126 HOH HOH . J 7 HOH A 127 530 127 HOH HOH . J 7 HOH A 128 531 128 HOH HOH . J 7 HOH A 129 532 129 HOH HOH . J 7 HOH A 130 533 130 HOH HOH . J 7 HOH A 131 534 131 HOH HOH . J 7 HOH A 132 535 132 HOH HOH . J 7 HOH A 133 536 133 HOH HOH . J 7 HOH A 134 537 134 HOH HOH . J 7 HOH A 135 538 135 HOH HOH . J 7 HOH A 136 539 136 HOH HOH . J 7 HOH A 137 540 137 HOH HOH . J 7 HOH A 138 541 138 HOH HOH . J 7 HOH A 139 542 139 HOH HOH . J 7 HOH A 140 543 140 HOH HOH . J 7 HOH A 141 544 141 HOH HOH . J 7 HOH A 142 545 142 HOH HOH . J 7 HOH A 143 546 143 HOH HOH . J 7 HOH A 144 547 144 HOH HOH . J 7 HOH A 145 548 145 HOH HOH . J 7 HOH A 146 549 146 HOH HOH . J 7 HOH A 147 550 147 HOH HOH . J 7 HOH A 148 551 148 HOH HOH . J 7 HOH A 149 552 149 HOH HOH . J 7 HOH A 150 553 150 HOH HOH . J 7 HOH A 151 554 151 HOH HOH . J 7 HOH A 152 555 152 HOH HOH . J 7 HOH A 153 556 153 HOH HOH . J 7 HOH A 154 557 154 HOH HOH . J 7 HOH A 155 558 155 HOH HOH . J 7 HOH A 156 559 156 HOH HOH . J 7 HOH A 157 560 157 HOH HOH . J 7 HOH A 158 561 158 HOH HOH . J 7 HOH A 159 562 159 HOH HOH . J 7 HOH A 160 563 160 HOH HOH . J 7 HOH A 161 564 161 HOH HOH . J 7 HOH A 162 565 162 HOH HOH . J 7 HOH A 163 566 163 HOH HOH . J 7 HOH A 164 567 164 HOH HOH . J 7 HOH A 165 568 165 HOH HOH . J 7 HOH A 166 569 166 HOH HOH . J 7 HOH A 167 570 167 HOH HOH . J 7 HOH A 168 571 168 HOH HOH . J 7 HOH A 169 572 169 HOH HOH . J 7 HOH A 170 573 170 HOH HOH . J 7 HOH A 171 574 171 HOH HOH . J 7 HOH A 172 575 172 HOH HOH . J 7 HOH A 173 576 173 HOH HOH . J 7 HOH A 174 577 174 HOH HOH . J 7 HOH A 175 578 175 HOH HOH . J 7 HOH A 176 579 176 HOH HOH . J 7 HOH A 177 580 177 HOH HOH . J 7 HOH A 178 581 178 HOH HOH . J 7 HOH A 179 582 179 HOH HOH . J 7 HOH A 180 583 180 HOH HOH . J 7 HOH A 181 584 181 HOH HOH . J 7 HOH A 182 585 182 HOH HOH . J 7 HOH A 183 586 183 HOH HOH . J 7 HOH A 184 587 184 HOH HOH . J 7 HOH A 185 588 185 HOH HOH . J 7 HOH A 186 589 186 HOH HOH . J 7 HOH A 187 590 187 HOH HOH . J 7 HOH A 188 591 188 HOH HOH . J 7 HOH A 189 592 189 HOH HOH . J 7 HOH A 190 593 190 HOH HOH . J 7 HOH A 191 594 191 HOH HOH . J 7 HOH A 192 595 192 HOH HOH . J 7 HOH A 193 596 193 HOH HOH . J 7 HOH A 194 597 194 HOH HOH . J 7 HOH A 195 598 195 HOH HOH . J 7 HOH A 196 599 196 HOH HOH . J 7 HOH A 197 600 197 HOH HOH . J 7 HOH A 198 601 198 HOH HOH . J 7 HOH A 199 602 199 HOH HOH . J 7 HOH A 200 603 200 HOH HOH . J 7 HOH A 201 604 201 HOH HOH . J 7 HOH A 202 605 202 HOH HOH . J 7 HOH A 203 606 203 HOH HOH . J 7 HOH A 204 607 204 HOH HOH . J 7 HOH A 205 608 205 HOH HOH . J 7 HOH A 206 609 206 HOH HOH . J 7 HOH A 207 610 207 HOH HOH . J 7 HOH A 208 611 208 HOH HOH . J 7 HOH A 209 612 209 HOH HOH . J 7 HOH A 210 613 210 HOH HOH . J 7 HOH A 211 614 211 HOH HOH . J 7 HOH A 212 615 212 HOH HOH . J 7 HOH A 213 616 213 HOH HOH . J 7 HOH A 214 617 214 HOH HOH . J 7 HOH A 215 618 215 HOH HOH . J 7 HOH A 216 619 216 HOH HOH . J 7 HOH A 217 620 217 HOH HOH . J 7 HOH A 218 621 218 HOH HOH . J 7 HOH A 219 622 219 HOH HOH . J 7 HOH A 220 623 220 HOH HOH . J 7 HOH A 221 624 221 HOH HOH . J 7 HOH A 222 625 222 HOH HOH . J 7 HOH A 223 626 223 HOH HOH . J 7 HOH A 224 627 224 HOH HOH . J 7 HOH A 225 628 225 HOH HOH . J 7 HOH A 226 629 226 HOH HOH . J 7 HOH A 227 630 227 HOH HOH . J 7 HOH A 228 631 228 HOH HOH . J 7 HOH A 229 632 229 HOH HOH . J 7 HOH A 230 633 230 HOH HOH . J 7 HOH A 231 634 231 HOH HOH . J 7 HOH A 232 635 232 HOH HOH . J 7 HOH A 233 636 233 HOH HOH . J 7 HOH A 234 637 234 HOH HOH . J 7 HOH A 235 638 235 HOH HOH . J 7 HOH A 236 639 236 HOH HOH . J 7 HOH A 237 640 237 HOH HOH . J 7 HOH A 238 641 238 HOH HOH . J 7 HOH A 239 642 239 HOH HOH . J 7 HOH A 240 643 240 HOH HOH . J 7 HOH A 241 644 241 HOH HOH . J 7 HOH A 242 645 242 HOH HOH . J 7 HOH A 243 646 243 HOH HOH . J 7 HOH A 244 647 244 HOH HOH . J 7 HOH A 245 648 245 HOH HOH . J 7 HOH A 246 649 246 HOH HOH . J 7 HOH A 247 650 247 HOH HOH . J 7 HOH A 248 651 248 HOH HOH . J 7 HOH A 249 652 249 HOH HOH . J 7 HOH A 250 653 250 HOH HOH . J 7 HOH A 251 654 251 HOH HOH . J 7 HOH A 252 655 252 HOH HOH . J 7 HOH A 253 656 253 HOH HOH . J 7 HOH A 254 657 254 HOH HOH . J 7 HOH A 255 658 255 HOH HOH . J 7 HOH A 256 659 256 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 ORO . . . C 3 3.712 46.018 4.775 1 19.14 ? N1 ORO 501 A 1 HETATM 2 C C2 ORO . . . C 3 4.658 45.134 5.144 1 16.04 ? C2 ORO 501 A 1 HETATM 3 O O2 ORO . . . C 3 5.285 44.484 4.265 1 20.46 ? O2 ORO 501 A 1 HETATM 4 N N3 ORO . . . C 3 4.935 44.964 6.448 1 14.56 ? N3 ORO 501 A 1 HETATM 5 C C4 ORO . . . C 3 4.305 45.685 7.386 1 14.68 ? C4 ORO 501 A 1 HETATM 6 O O4 ORO . . . C 3 4.577 45.547 8.578 1 16.68 ? O4 ORO 501 A 1 HETATM 7 C C5 ORO . . . C 3 3.309 46.597 7.015 1 21.9 ? C5 ORO 501 A 1 HETATM 8 C C6 ORO . . . C 3 3.023 46.743 5.672 1 23.64 ? C6 ORO 501 A 1 HETATM 9 C C7 ORO . . . C 3 2.016 47.757 5.223 1 22.65 ? C7 ORO 501 A 1 HETATM 10 O O71 ORO . . . C 3 0.934 47.938 5.829 1 18.82 ? O71 ORO 501 A 1 HETATM 11 O O72 ORO . . . C 3 2.358 48.462 4.257 1 21.28 ? O72 ORO 501 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 860 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 11 #