data_3U2P # _model_server_result.job_id 0Da_esTiYSoyMnKGuxitRw _model_server_result.datetime_utc '2024-12-26 10:54:53' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3u2p # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1001}' # _entry.id 3U2P # _exptl.entry_id 3U2P _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 221.208 _entity.id 2 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3U2P _cell.length_a 42.17 _cell.length_b 85.56 _cell.length_c 152.4 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3U2P _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 4 A CYS 4 1_555 A SG CYS 31 A CYS 31 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf2 A SG CYS 131 A CYS 131 1_555 A SG CYS 161 A CYS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf3 A SG CYS 164 A CYS 164 1_555 A SG CYS 172 A CYS 172 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf4 A SG CYS 168 A CYS 168 1_555 A SG CYS 180 A CYS 180 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf5 A SG CYS 188 A CYS 188 1_555 A SG CYS 196 A CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf6 A SG CYS 192 A CYS 192 1_555 A SG CYS 204 A CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf7 A SG CYS 205 A CYS 205 1_555 A SG CYS 213 A CYS 213 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf8 A SG CYS 209 A CYS 209 1_555 A SG CYS 221 A CYS 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf9 A SG CYS 224 A CYS 224 1_555 A SG CYS 233 A CYS 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf10 A SG CYS 237 A CYS 237 1_555 A SG CYS 264 A CYS 264 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf11 A SG CYS 268 A CYS 268 1_555 A SG CYS 279 A CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf12 A SG CYS 283 A CYS 283 1_555 A SG CYS 298 A CYS 298 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf13 A SG CYS 301 A CYS 301 1_555 A SG CYS 305 A CYS 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf14 A SG CYS 309 A CYS 309 1_555 A SG CYS 334 A CYS 334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf15 A SG CYS 442 A CYS 442 1_555 A SG CYS 471 A CYS 471 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf16 A SG CYS 478 A CYS 478 1_555 A SG CYS 487 A CYS 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf17 A SG CYS 482 A CYS 482 1_555 A SG CYS 495 A CYS 495 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? covale ? covale1 A ND2 ASN 113 A ASN 113 1_555 B C1 NAG . A NAG 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? covale ? covale2 A ND2 ASN 228 A ASN 228 1_555 C C1 NAG . A NAG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale3 A ND2 ASN 333 A ASN 333 1_555 D C1 NAG . A NAG 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale4 A ND2 ASN 385 A ASN 385 1_555 E C1 NAG . A NAG 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? covale ? covale5 A ND2 ASN 470 A ASN 470 1_555 F C1 NAG . A NAG 1005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.441 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 237 n n C1 O1 NAG sing 238 n n C1 O5 NAG sing 239 n n C1 H1 NAG sing 240 n n C2 C3 NAG sing 241 n n C2 N2 NAG sing 242 n n C2 H2 NAG sing 243 n n C3 C4 NAG sing 244 n n C3 O3 NAG sing 245 n n C3 H3 NAG sing 246 n n C4 C5 NAG sing 247 n n C4 O4 NAG sing 248 n n C4 H4 NAG sing 249 n n C5 C6 NAG sing 250 n n C5 O5 NAG sing 251 n n C5 H5 NAG sing 252 n n C6 O6 NAG sing 253 n n C6 H61 NAG sing 254 n n C6 H62 NAG sing 255 n n C7 C8 NAG sing 256 n n C7 N2 NAG sing 257 n n C7 O7 NAG doub 258 n n C8 H81 NAG sing 259 n n C8 H82 NAG sing 260 n n C8 H83 NAG sing 261 n n N2 HN2 NAG sing 262 n n O1 HO1 NAG sing 263 n n O3 HO3 NAG sing 264 n n O4 HO4 NAG sing 265 n n O6 HO6 NAG sing 266 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 3U2P _atom_sites.fract_transf_matrix[1][1] 0.023714 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011688 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006562 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG A 1 1001 1001 NAG NAG . C 2 NAG A 1 1002 1002 NAG NAG . D 2 NAG A 1 1003 1003 NAG NAG . E 2 NAG A 1 1004 1004 NAG NAG . F 2 NAG A 1 1005 1005 NAG NAG . G 3 HOH A 1 498 1 HOH HOH . G 3 HOH A 2 499 2 HOH HOH . G 3 HOH A 3 500 3 HOH HOH . G 3 HOH A 4 501 4 HOH HOH . G 3 HOH A 5 502 5 HOH HOH . G 3 HOH A 6 503 6 HOH HOH . G 3 HOH A 7 504 7 HOH HOH . G 3 HOH A 8 505 8 HOH HOH . G 3 HOH A 9 506 9 HOH HOH . G 3 HOH A 10 507 10 HOH HOH . G 3 HOH A 11 508 11 HOH HOH . G 3 HOH A 12 509 12 HOH HOH . G 3 HOH A 13 510 13 HOH HOH . G 3 HOH A 14 511 14 HOH HOH . G 3 HOH A 15 512 15 HOH HOH . G 3 HOH A 16 513 16 HOH HOH . G 3 HOH A 17 514 17 HOH HOH . G 3 HOH A 18 515 18 HOH HOH . G 3 HOH A 19 516 19 HOH HOH . G 3 HOH A 20 517 20 HOH HOH . G 3 HOH A 21 518 21 HOH HOH . G 3 HOH A 22 519 22 HOH HOH . G 3 HOH A 23 520 23 HOH HOH . G 3 HOH A 24 521 24 HOH HOH . G 3 HOH A 25 522 25 HOH HOH . G 3 HOH A 26 523 26 HOH HOH . G 3 HOH A 27 524 27 HOH HOH . G 3 HOH A 28 525 28 HOH HOH . G 3 HOH A 29 526 29 HOH HOH . G 3 HOH A 30 527 30 HOH HOH . G 3 HOH A 31 528 31 HOH HOH . G 3 HOH A 32 529 32 HOH HOH . G 3 HOH A 33 530 33 HOH HOH . G 3 HOH A 34 531 34 HOH HOH . G 3 HOH A 35 532 35 HOH HOH . G 3 HOH A 36 533 36 HOH HOH . G 3 HOH A 37 534 37 HOH HOH . G 3 HOH A 38 535 38 HOH HOH . G 3 HOH A 39 536 39 HOH HOH . G 3 HOH A 40 537 40 HOH HOH . G 3 HOH A 41 538 41 HOH HOH . G 3 HOH A 42 539 42 HOH HOH . G 3 HOH A 43 540 43 HOH HOH . G 3 HOH A 44 541 44 HOH HOH . G 3 HOH A 45 542 45 HOH HOH . G 3 HOH A 46 543 46 HOH HOH . G 3 HOH A 47 544 47 HOH HOH . G 3 HOH A 48 545 48 HOH HOH . G 3 HOH A 49 546 49 HOH HOH . G 3 HOH A 50 547 50 HOH HOH . G 3 HOH A 51 548 51 HOH HOH . G 3 HOH A 52 549 52 HOH HOH . G 3 HOH A 53 550 53 HOH HOH . G 3 HOH A 54 551 54 HOH HOH . G 3 HOH A 55 552 55 HOH HOH . G 3 HOH A 56 553 56 HOH HOH . G 3 HOH A 57 554 57 HOH HOH . G 3 HOH A 58 555 58 HOH HOH . G 3 HOH A 59 556 59 HOH HOH . G 3 HOH A 60 557 60 HOH HOH . G 3 HOH A 61 558 61 HOH HOH . G 3 HOH A 62 559 62 HOH HOH . G 3 HOH A 63 560 63 HOH HOH . G 3 HOH A 64 561 64 HOH HOH . G 3 HOH A 65 562 65 HOH HOH . G 3 HOH A 66 563 66 HOH HOH . G 3 HOH A 67 564 67 HOH HOH . G 3 HOH A 68 565 68 HOH HOH . G 3 HOH A 69 566 69 HOH HOH . G 3 HOH A 70 567 70 HOH HOH . G 3 HOH A 71 568 71 HOH HOH . G 3 HOH A 72 569 72 HOH HOH . G 3 HOH A 73 570 73 HOH HOH . G 3 HOH A 74 571 74 HOH HOH . G 3 HOH A 75 572 75 HOH HOH . G 3 HOH A 76 573 76 HOH HOH . G 3 HOH A 77 574 77 HOH HOH . G 3 HOH A 78 575 78 HOH HOH . G 3 HOH A 79 576 79 HOH HOH . G 3 HOH A 80 577 80 HOH HOH . G 3 HOH A 81 578 81 HOH HOH . G 3 HOH A 82 579 82 HOH HOH . G 3 HOH A 83 580 83 HOH HOH . G 3 HOH A 84 581 84 HOH HOH . G 3 HOH A 85 582 85 HOH HOH . G 3 HOH A 86 583 86 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . B 2 -15.379 -3.757 -11.017 1 43.86 ? C1 NAG 1001 A 1 HETATM 2 C C2 NAG . . . B 2 -16.578 -3.849 -9.985 1 45.77 ? C2 NAG 1001 A 1 HETATM 3 C C3 NAG . . . B 2 -17.605 -4.933 -10.435 1 47.11 ? C3 NAG 1001 A 1 HETATM 4 C C4 NAG . . . B 2 -17.738 -5.226 -11.958 1 47.59 ? C4 NAG 1001 A 1 HETATM 5 C C5 NAG . . . B 2 -16.408 -5.269 -12.687 1 46.6 ? C5 NAG 1001 A 1 HETATM 6 C C6 NAG . . . B 2 -16.619 -5.333 -14.195 1 47.44 ? C6 NAG 1001 A 1 HETATM 7 C C7 NAG . . . B 2 -15.62 -4.656 -7.816 1 48.69 ? C7 NAG 1001 A 1 HETATM 8 C C8 NAG . . . B 2 -14.663 -5.773 -7.49 1 49.52 ? C8 NAG 1001 A 1 HETATM 9 N N2 NAG . . . B 2 -15.81 -4.64 -9.09 1 47 ? N2 NAG 1001 A 1 HETATM 10 O O3 NAG . . . B 2 -18.856 -4.626 -9.852 1 49.19 ? O3 NAG 1001 A 1 HETATM 11 O O4 NAG . . . B 2 -18.278 -6.538 -12.151 1 50.37 ? O4 NAG 1001 A 1 HETATM 12 O O5 NAG . . . B 2 -15.604 -4.112 -12.402 1 45.06 ? O5 NAG 1001 A 1 HETATM 13 O O6 NAG . . . B 2 -17.308 -4.187 -14.721 1 48.73 ? O6 NAG 1001 A 1 HETATM 14 O O7 NAG . . . B 2 -16.134 -3.868 -7.064 1 51.1 ? O7 NAG 1001 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 261 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 14 #