data_3U31
#
_model_server_result.job_id            1eeg2nsCN9FrCuxUGJLnjg 
_model_server_result.datetime_utc      '2024-11-22 18:14:31' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3u31 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":275}' 
#
_entry.id    3U31 
#
_exptl.entry_id    3U31 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3U31 
_cell.length_a            32.173 
_cell.length_b            102.734 
_cell.length_c            105.184 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3U31 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 B C ARG 5 B ARG 8 1_555 B N MYK 6 B MYK 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale2 B C MYK 6 B MYK 9 1_555 B N SER 7 B SER 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
metalc ? metalc1 A SG CYS 157 A CYS 140 1_555 E ZN ZN . A ZN 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? 
metalc ? metalc2 A SG CYS 160 A CYS 143 1_555 E ZN ZN . A ZN 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? 
metalc ? metalc3 A SG CYS 185 A CYS 168 1_555 E ZN ZN . A ZN 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? 
metalc ? metalc4 A SG CYS 187 A CYS 170 1_555 E ZN ZN . A ZN 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 129 n n 
C1 C2 GOL sing 130 n n 
C1 H11 GOL sing 131 n n 
C1 H12 GOL sing 132 n n 
O1 HO1 GOL sing 133 n n 
C2 O2 GOL sing 134 n n 
C2 C3 GOL sing 135 n n 
C2 H2 GOL sing 136 n n 
O2 HO2 GOL sing 137 n n 
C3 O3 GOL sing 138 n n 
C3 H31 GOL sing 139 n n 
C3 H32 GOL sing 140 n n 
O3 HO3 GOL sing 141 n n 
#
_atom_sites.entry_id                     3U31 
_atom_sites.fract_transf_matrix[1][1]    0.031082 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009734 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009507 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 NAD A 1 274 1 NAD NAD . 
D 4 GOL A 1 275 1 GOL GOL . 
E 5 ZN A 1 276 1 ZN ZN . 
F 6 HOH A 1 277 2 HOH HOH . 
F 6 HOH A 2 278 3 HOH HOH . 
F 6 HOH A 3 279 4 HOH HOH . 
F 6 HOH A 4 280 5 HOH HOH . 
F 6 HOH A 5 281 6 HOH HOH . 
F 6 HOH A 6 282 7 HOH HOH . 
F 6 HOH A 7 283 8 HOH HOH . 
F 6 HOH A 8 284 9 HOH HOH . 
F 6 HOH A 9 285 10 HOH HOH . 
F 6 HOH A 10 286 11 HOH HOH . 
F 6 HOH A 11 287 12 HOH HOH . 
F 6 HOH A 12 288 13 HOH HOH . 
F 6 HOH A 13 289 14 HOH HOH . 
F 6 HOH A 14 290 15 HOH HOH . 
F 6 HOH A 15 291 16 HOH HOH . 
F 6 HOH A 16 292 17 HOH HOH . 
F 6 HOH A 17 293 18 HOH HOH . 
F 6 HOH A 18 294 19 HOH HOH . 
F 6 HOH A 19 295 20 HOH HOH . 
F 6 HOH A 20 296 21 HOH HOH . 
F 6 HOH A 21 297 22 HOH HOH . 
F 6 HOH A 22 298 23 HOH HOH . 
F 6 HOH A 23 299 24 HOH HOH . 
F 6 HOH A 24 300 25 HOH HOH . 
F 6 HOH A 25 301 26 HOH HOH . 
F 6 HOH A 26 302 27 HOH HOH . 
F 6 HOH A 27 303 29 HOH HOH . 
F 6 HOH A 28 304 30 HOH HOH . 
F 6 HOH A 29 305 31 HOH HOH . 
F 6 HOH A 30 306 32 HOH HOH . 
F 6 HOH A 31 307 33 HOH HOH . 
F 6 HOH A 32 308 34 HOH HOH . 
F 6 HOH A 33 309 35 HOH HOH . 
F 6 HOH A 34 310 36 HOH HOH . 
F 6 HOH A 35 311 37 HOH HOH . 
F 6 HOH A 36 312 38 HOH HOH . 
F 6 HOH A 37 313 39 HOH HOH . 
F 6 HOH A 38 314 40 HOH HOH . 
F 6 HOH A 39 315 41 HOH HOH . 
F 6 HOH A 40 316 42 HOH HOH . 
F 6 HOH A 41 317 43 HOH HOH . 
F 6 HOH A 42 318 44 HOH HOH . 
F 6 HOH A 43 319 45 HOH HOH . 
F 6 HOH A 44 320 47 HOH HOH . 
F 6 HOH A 45 321 48 HOH HOH . 
F 6 HOH A 46 322 49 HOH HOH . 
F 6 HOH A 47 323 50 HOH HOH . 
F 6 HOH A 48 324 51 HOH HOH . 
F 6 HOH A 49 325 52 HOH HOH . 
F 6 HOH A 50 326 53 HOH HOH . 
F 6 HOH A 51 327 54 HOH HOH . 
F 6 HOH A 52 328 55 HOH HOH . 
F 6 HOH A 53 329 56 HOH HOH . 
F 6 HOH A 54 330 57 HOH HOH . 
F 6 HOH A 55 331 58 HOH HOH . 
F 6 HOH A 56 332 59 HOH HOH . 
F 6 HOH A 57 333 60 HOH HOH . 
F 6 HOH A 58 334 61 HOH HOH . 
F 6 HOH A 59 335 62 HOH HOH . 
F 6 HOH A 60 336 63 HOH HOH . 
F 6 HOH A 61 337 64 HOH HOH . 
F 6 HOH A 62 338 65 HOH HOH . 
F 6 HOH A 63 339 66 HOH HOH . 
F 6 HOH A 64 340 67 HOH HOH . 
F 6 HOH A 65 341 68 HOH HOH . 
F 6 HOH A 66 342 69 HOH HOH . 
F 6 HOH A 67 343 70 HOH HOH . 
F 6 HOH A 68 344 71 HOH HOH . 
F 6 HOH A 69 345 72 HOH HOH . 
F 6 HOH A 70 346 73 HOH HOH . 
F 6 HOH A 71 347 74 HOH HOH . 
F 6 HOH A 72 348 75 HOH HOH . 
F 6 HOH A 73 349 76 HOH HOH . 
F 6 HOH A 74 350 77 HOH HOH . 
G 6 HOH B 1 28 28 HOH HOH . 
G 6 HOH B 2 46 46 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 4 -10.187 18.747 -32.713 1 37.84 ? C1 GOL 275 A 1 
HETATM 2 O O1 GOL . . . D 4 -8.932 19.384 -32.9 1 40.8 ? O1 GOL 275 A 1 
HETATM 3 C C2 GOL . . . D 4 -11.18 18.99 -33.866 1 36.84 ? C2 GOL 275 A 1 
HETATM 4 O O2 GOL . . . D 4 -12.444 18.584 -33.447 1 33.97 ? O2 GOL 275 A 1 
HETATM 5 C C3 GOL . . . D 4 -11.155 20.344 -34.544 1 36.37 ? C3 GOL 275 A 1 
HETATM 6 O O3 GOL . . . D 4 -12.39 20.681 -35.17 1 40.55 ? O3 GOL 275 A 1 
#
_model_server_stats.io_time_ms              52 
_model_server_stats.parse_time_ms           27 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           287 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#