data_3U31 # _model_server_result.job_id JXOl3gTsw1OTMVEdTcTXyw _model_server_result.datetime_utc '2024-11-26 03:15:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3u31 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":276}' # _entry.id 3U31 # _exptl.entry_id 3U31 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3U31 _cell.length_a 32.173 _cell.length_b 102.734 _cell.length_c 105.184 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3U31 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C ARG 5 B ARG 8 1_555 B N MYK 6 B MYK 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 B C MYK 6 B MYK 9 1_555 B N SER 7 B SER 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? metalc ? metalc1 A SG CYS 157 A CYS 140 1_555 E ZN ZN . A ZN 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? metalc ? metalc2 A SG CYS 160 A CYS 143 1_555 E ZN ZN . A ZN 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.297 ? metalc ? metalc3 A SG CYS 185 A CYS 168 1_555 E ZN ZN . A ZN 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.465 ? metalc ? metalc4 A SG CYS 187 A CYS 170 1_555 E ZN ZN . A ZN 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3U31 _atom_sites.fract_transf_matrix[1][1] 0.031082 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009734 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009507 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAD A 1 274 1 NAD NAD . D 4 GOL A 1 275 1 GOL GOL . E 5 ZN A 1 276 1 ZN ZN . F 6 HOH A 1 277 2 HOH HOH . F 6 HOH A 2 278 3 HOH HOH . F 6 HOH A 3 279 4 HOH HOH . F 6 HOH A 4 280 5 HOH HOH . F 6 HOH A 5 281 6 HOH HOH . F 6 HOH A 6 282 7 HOH HOH . F 6 HOH A 7 283 8 HOH HOH . F 6 HOH A 8 284 9 HOH HOH . F 6 HOH A 9 285 10 HOH HOH . F 6 HOH A 10 286 11 HOH HOH . F 6 HOH A 11 287 12 HOH HOH . F 6 HOH A 12 288 13 HOH HOH . F 6 HOH A 13 289 14 HOH HOH . F 6 HOH A 14 290 15 HOH HOH . F 6 HOH A 15 291 16 HOH HOH . F 6 HOH A 16 292 17 HOH HOH . F 6 HOH A 17 293 18 HOH HOH . F 6 HOH A 18 294 19 HOH HOH . F 6 HOH A 19 295 20 HOH HOH . F 6 HOH A 20 296 21 HOH HOH . F 6 HOH A 21 297 22 HOH HOH . F 6 HOH A 22 298 23 HOH HOH . F 6 HOH A 23 299 24 HOH HOH . F 6 HOH A 24 300 25 HOH HOH . F 6 HOH A 25 301 26 HOH HOH . F 6 HOH A 26 302 27 HOH HOH . F 6 HOH A 27 303 29 HOH HOH . F 6 HOH A 28 304 30 HOH HOH . F 6 HOH A 29 305 31 HOH HOH . F 6 HOH A 30 306 32 HOH HOH . F 6 HOH A 31 307 33 HOH HOH . F 6 HOH A 32 308 34 HOH HOH . F 6 HOH A 33 309 35 HOH HOH . F 6 HOH A 34 310 36 HOH HOH . F 6 HOH A 35 311 37 HOH HOH . F 6 HOH A 36 312 38 HOH HOH . F 6 HOH A 37 313 39 HOH HOH . F 6 HOH A 38 314 40 HOH HOH . F 6 HOH A 39 315 41 HOH HOH . F 6 HOH A 40 316 42 HOH HOH . F 6 HOH A 41 317 43 HOH HOH . F 6 HOH A 42 318 44 HOH HOH . F 6 HOH A 43 319 45 HOH HOH . F 6 HOH A 44 320 47 HOH HOH . F 6 HOH A 45 321 48 HOH HOH . F 6 HOH A 46 322 49 HOH HOH . F 6 HOH A 47 323 50 HOH HOH . F 6 HOH A 48 324 51 HOH HOH . F 6 HOH A 49 325 52 HOH HOH . F 6 HOH A 50 326 53 HOH HOH . F 6 HOH A 51 327 54 HOH HOH . F 6 HOH A 52 328 55 HOH HOH . F 6 HOH A 53 329 56 HOH HOH . F 6 HOH A 54 330 57 HOH HOH . F 6 HOH A 55 331 58 HOH HOH . F 6 HOH A 56 332 59 HOH HOH . F 6 HOH A 57 333 60 HOH HOH . F 6 HOH A 58 334 61 HOH HOH . F 6 HOH A 59 335 62 HOH HOH . F 6 HOH A 60 336 63 HOH HOH . F 6 HOH A 61 337 64 HOH HOH . F 6 HOH A 62 338 65 HOH HOH . F 6 HOH A 63 339 66 HOH HOH . F 6 HOH A 64 340 67 HOH HOH . F 6 HOH A 65 341 68 HOH HOH . F 6 HOH A 66 342 69 HOH HOH . F 6 HOH A 67 343 70 HOH HOH . F 6 HOH A 68 344 71 HOH HOH . F 6 HOH A 69 345 72 HOH HOH . F 6 HOH A 70 346 73 HOH HOH . F 6 HOH A 71 347 74 HOH HOH . F 6 HOH A 72 348 75 HOH HOH . F 6 HOH A 73 349 76 HOH HOH . F 6 HOH A 74 350 77 HOH HOH . G 6 HOH B 1 28 28 HOH HOH . G 6 HOH B 2 46 46 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 5 _atom_site.Cartn_x -24.718 _atom_site.Cartn_y 15.746 _atom_site.Cartn_z -56.177 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 36.59 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 276 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #