data_3U32
#
_model_server_result.job_id            HuPQ9uMbZfxJ2pr-5K_VIQ 
_model_server_result.datetime_utc      '2024-11-24 12:50:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3u32 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":159}' 
#
_entry.id    3U32 
#
_exptl.entry_id    3U32 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              224.342 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            DICYCLOHEXYLUREA 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3U32 
_cell.length_a            54.572 
_cell.length_b            54.572 
_cell.length_c            244.559 
_cell.Z_PDB               40 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3U32 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        93 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 42 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    decameric 
_pdbx_struct_assembly.oligomeric_count      10 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 54.572 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 F N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C FME 1 K FME 1 1_555 A N GLN 2 K GLN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale2 A CD GLU 59 K GLU 59 1_555 F N1 DCW . K DCW 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? 
covale ? covale3 B C FME 1 L FME 1 1_555 B N GLN 2 L GLN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale4 B CD GLU 59 L GLU 59 1_555 G N1 DCW . L DCW 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.355 ? 
covale ? covale5 C C FME 1 M FME 1 1_555 C N GLN 2 M GLN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale6 C CD GLU 59 M GLU 59 1_555 H N1 DCW . M DCW 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? 
covale ? covale7 D C FME 1 N FME 1 1_555 D N GLN 2 N GLN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale8 D CD GLU 59 N GLU 59 1_555 I N1 DCW . N DCW 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.355 ? 
covale ? covale9 E C FME 1 O FME 1 1_555 E N GLN 2 O GLN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale10 E CD GLU 59 O GLU 59 1_555 J N1 DCW . O DCW 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? 
#
_chem_comp.formula           'C13 H24 N2 O' 
_chem_comp.formula_weight    224.342 
_chem_comp.id                DCW 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              DICYCLOHEXYLUREA 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C1 DCW sing 83 n n 
N1 C2 DCW sing 84 n n 
O1 C1 DCW doub 85 n n 
C1 N2 DCW sing 86 n n 
C2 C3 DCW sing 87 n n 
C2 C7 DCW sing 88 n n 
N2 C8 DCW sing 89 n n 
C3 C4 DCW sing 90 n n 
C7 C6 DCW sing 91 n n 
C4 C5 DCW sing 92 n n 
C5 C6 DCW sing 93 n n 
C8 C9 DCW sing 94 n n 
C8 C13 DCW sing 95 n n 
C9 C10 DCW sing 96 n n 
C13 C12 DCW sing 97 n n 
C10 C11 DCW sing 98 n n 
C11 C12 DCW sing 99 n n 
N1 H1 DCW sing 100 n n 
C2 H2 DCW sing 101 n n 
N2 HA DCW sing 102 n n 
C3 H31C DCW sing 103 n n 
C3 H32C DCW sing 104 n n 
C7 H71C DCW sing 105 n n 
C7 H72C DCW sing 106 n n 
C8 H8 DCW sing 107 n n 
C4 H41C DCW sing 108 n n 
C4 H42C DCW sing 109 n n 
C6 H61C DCW sing 110 n n 
C6 H62C DCW sing 111 n n 
C5 H51C DCW sing 112 n n 
C5 H52C DCW sing 113 n n 
C9 H91C DCW sing 114 n n 
C9 H92C DCW sing 115 n n 
C13 H131 DCW sing 116 n n 
C13 H132 DCW sing 117 n n 
C10 H101 DCW sing 118 n n 
C10 H102 DCW sing 119 n n 
C12 H121 DCW sing 120 n n 
C12 H122 DCW sing 121 n n 
C11 H111 DCW sing 122 n n 
C11 H112 DCW sing 123 n n 
#
_atom_sites.entry_id                     3U32 
_atom_sites.fract_transf_matrix[1][1]    0.018324 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.018324 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.004089 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
F 2 DCW K 1 159 59 DCW GLH . 
G 2 DCW L 1 159 59 DCW GLH . 
H 2 DCW M 1 159 59 DCW GLH . 
I 2 DCW N 1 159 59 DCW GLH . 
J 2 DCW O 1 159 59 DCW GLH . 
K 3 HOH K 1 77 5 HOH HOH . 
K 3 HOH K 2 78 10 HOH HOH . 
K 3 HOH K 3 79 11 HOH HOH . 
K 3 HOH K 4 80 12 HOH HOH . 
K 3 HOH K 5 81 18 HOH HOH . 
K 3 HOH K 6 82 21 HOH HOH . 
K 3 HOH K 7 83 26 HOH HOH . 
K 3 HOH K 8 84 32 HOH HOH . 
K 3 HOH K 9 85 36 HOH HOH . 
K 3 HOH K 10 86 38 HOH HOH . 
K 3 HOH K 11 87 42 HOH HOH . 
K 3 HOH K 12 88 49 HOH HOH . 
K 3 HOH K 13 89 53 HOH HOH . 
K 3 HOH K 14 90 54 HOH HOH . 
L 3 HOH L 1 77 7 HOH HOH . 
L 3 HOH L 2 78 8 HOH HOH . 
L 3 HOH L 3 79 24 HOH HOH . 
L 3 HOH L 4 80 28 HOH HOH . 
L 3 HOH L 5 81 30 HOH HOH . 
L 3 HOH L 6 82 35 HOH HOH . 
L 3 HOH L 7 83 39 HOH HOH . 
L 3 HOH L 8 84 44 HOH HOH . 
L 3 HOH L 9 85 47 HOH HOH . 
M 3 HOH M 1 77 2 HOH HOH . 
M 3 HOH M 2 78 4 HOH HOH . 
M 3 HOH M 3 79 13 HOH HOH . 
M 3 HOH M 4 80 17 HOH HOH . 
M 3 HOH M 5 81 19 HOH HOH . 
M 3 HOH M 6 82 37 HOH HOH . 
M 3 HOH M 7 83 40 HOH HOH . 
M 3 HOH M 8 84 43 HOH HOH . 
M 3 HOH M 9 85 51 HOH HOH . 
M 3 HOH M 10 86 52 HOH HOH . 
N 3 HOH N 1 77 9 HOH HOH . 
N 3 HOH N 2 78 14 HOH HOH . 
N 3 HOH N 3 79 15 HOH HOH . 
N 3 HOH N 4 80 16 HOH HOH . 
N 3 HOH N 5 81 22 HOH HOH . 
N 3 HOH N 6 82 25 HOH HOH . 
N 3 HOH N 7 83 31 HOH HOH . 
N 3 HOH N 8 84 34 HOH HOH . 
N 3 HOH N 9 85 45 HOH HOH . 
N 3 HOH N 10 86 46 HOH HOH . 
N 3 HOH N 11 87 50 HOH HOH . 
N 3 HOH N 12 88 55 HOH HOH . 
O 3 HOH O 1 77 1 HOH HOH . 
O 3 HOH O 2 78 3 HOH HOH . 
O 3 HOH O 3 79 6 HOH HOH . 
O 3 HOH O 4 80 20 HOH HOH . 
O 3 HOH O 5 81 23 HOH HOH . 
O 3 HOH O 6 82 27 HOH HOH . 
O 3 HOH O 7 83 29 HOH HOH . 
O 3 HOH O 8 84 33 HOH HOH . 
O 3 HOH O 9 85 41 HOH HOH . 
O 3 HOH O 10 86 48 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 DCW . . . H 2 13.739 16.643 31.22 1 51.33 ? N1 DCW 159 M 1 
HETATM 2 O O1 DCW . . . H 2 11.772 16.852 32.246 1 53.72 ? O1 DCW 159 M 1 
HETATM 3 C C1 DCW . . . H 2 12.569 17.276 31.415 1 54.4 ? C1 DCW 159 M 1 
HETATM 4 C C2 DCW . . . H 2 14.924 16.825 32.072 1 54.07 ? C2 DCW 159 M 1 
HETATM 5 N N2 DCW . . . H 2 12.292 18.347 30.66 1 57.04 ? N2 DCW 159 M 1 
HETATM 6 C C3 DCW . . . H 2 15.04 18.282 32.522 1 58.09 ? C3 DCW 159 M 1 
HETATM 7 C C7 DCW . . . H 2 14.747 15.883 33.271 1 54.22 ? C7 DCW 159 M 1 
HETATM 8 C C4 DCW . . . H 2 16.205 18.425 33.498 1 60.59 ? C4 DCW 159 M 1 
HETATM 9 C C5 DCW . . . H 2 16.07 17.465 34.68 1 59.8 ? C5 DCW 159 M 1 
HETATM 10 C C6 DCW . . . H 2 15.932 16.013 34.218 1 56.94 ? C6 DCW 159 M 1 
HETATM 11 C C8 DCW . . . H 2 11.039 19.081 30.779 1 60.33 ? C8 DCW 159 M 1 
HETATM 12 C C9 DCW . . . H 2 11.118 20.162 31.867 1 63.91 ? C9 DCW 159 M 1 
HETATM 13 C C13 DCW . . . H 2 10.66 19.698 29.43 1 61.01 ? C13 DCW 159 M 1 
HETATM 14 C C10 DCW . . . H 2 9.822 20.973 31.974 1 67.34 ? C10 DCW 159 M 1 
HETATM 15 C C11 DCW . . . H 2 9.4 21.556 30.621 1 68.06 ? C11 DCW 159 M 1 
HETATM 16 C C12 DCW . . . H 2 9.343 20.477 29.533 1 64.51 ? C12 DCW 159 M 1 
#
_model_server_stats.io_time_ms              52 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           326 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           16 
#