data_3U32 # _model_server_result.job_id AA-idQKKVonnJIT-Uu4dKw _model_server_result.datetime_utc '2024-11-28 06:13:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3u32 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":159}' # _entry.id 3U32 # _exptl.entry_id 3U32 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 224.342 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description DICYCLOHEXYLUREA _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3U32 _cell.length_a 54.572 _cell.length_b 54.572 _cell.length_c 244.559 _cell.Z_PDB 40 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3U32 _symmetry.cell_setting ? _symmetry.Int_Tables_number 93 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details decameric _pdbx_struct_assembly.oligomeric_count 10 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 54.572 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C FME 1 K FME 1 1_555 A N GLN 2 K GLN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale2 A CD GLU 59 K GLU 59 1_555 F N1 DCW . K DCW 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? covale ? covale3 B C FME 1 L FME 1 1_555 B N GLN 2 L GLN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale4 B CD GLU 59 L GLU 59 1_555 G N1 DCW . L DCW 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.355 ? covale ? covale5 C C FME 1 M FME 1 1_555 C N GLN 2 M GLN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale6 C CD GLU 59 M GLU 59 1_555 H N1 DCW . M DCW 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale7 D C FME 1 N FME 1 1_555 D N GLN 2 N GLN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale8 D CD GLU 59 N GLU 59 1_555 I N1 DCW . N DCW 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.355 ? covale ? covale9 E C FME 1 O FME 1 1_555 E N GLN 2 O GLN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale10 E CD GLU 59 O GLU 59 1_555 J N1 DCW . O DCW 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? # _chem_comp.formula 'C13 H24 N2 O' _chem_comp.formula_weight 224.342 _chem_comp.id DCW _chem_comp.mon_nstd_flag . _chem_comp.name DICYCLOHEXYLUREA _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C1 DCW sing 83 n n N1 C2 DCW sing 84 n n O1 C1 DCW doub 85 n n C1 N2 DCW sing 86 n n C2 C3 DCW sing 87 n n C2 C7 DCW sing 88 n n N2 C8 DCW sing 89 n n C3 C4 DCW sing 90 n n C7 C6 DCW sing 91 n n C4 C5 DCW sing 92 n n C5 C6 DCW sing 93 n n C8 C9 DCW sing 94 n n C8 C13 DCW sing 95 n n C9 C10 DCW sing 96 n n C13 C12 DCW sing 97 n n C10 C11 DCW sing 98 n n C11 C12 DCW sing 99 n n N1 H1 DCW sing 100 n n C2 H2 DCW sing 101 n n N2 HA DCW sing 102 n n C3 H31C DCW sing 103 n n C3 H32C DCW sing 104 n n C7 H71C DCW sing 105 n n C7 H72C DCW sing 106 n n C8 H8 DCW sing 107 n n C4 H41C DCW sing 108 n n C4 H42C DCW sing 109 n n C6 H61C DCW sing 110 n n C6 H62C DCW sing 111 n n C5 H51C DCW sing 112 n n C5 H52C DCW sing 113 n n C9 H91C DCW sing 114 n n C9 H92C DCW sing 115 n n C13 H131 DCW sing 116 n n C13 H132 DCW sing 117 n n C10 H101 DCW sing 118 n n C10 H102 DCW sing 119 n n C12 H121 DCW sing 120 n n C12 H122 DCW sing 121 n n C11 H111 DCW sing 122 n n C11 H112 DCW sing 123 n n # _atom_sites.entry_id 3U32 _atom_sites.fract_transf_matrix[1][1] 0.018324 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018324 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004089 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 2 DCW K 1 159 59 DCW GLH . G 2 DCW L 1 159 59 DCW GLH . H 2 DCW M 1 159 59 DCW GLH . I 2 DCW N 1 159 59 DCW GLH . J 2 DCW O 1 159 59 DCW GLH . K 3 HOH K 1 77 5 HOH HOH . K 3 HOH K 2 78 10 HOH HOH . K 3 HOH K 3 79 11 HOH HOH . K 3 HOH K 4 80 12 HOH HOH . K 3 HOH K 5 81 18 HOH HOH . K 3 HOH K 6 82 21 HOH HOH . K 3 HOH K 7 83 26 HOH HOH . K 3 HOH K 8 84 32 HOH HOH . K 3 HOH K 9 85 36 HOH HOH . K 3 HOH K 10 86 38 HOH HOH . K 3 HOH K 11 87 42 HOH HOH . K 3 HOH K 12 88 49 HOH HOH . K 3 HOH K 13 89 53 HOH HOH . K 3 HOH K 14 90 54 HOH HOH . L 3 HOH L 1 77 7 HOH HOH . L 3 HOH L 2 78 8 HOH HOH . L 3 HOH L 3 79 24 HOH HOH . L 3 HOH L 4 80 28 HOH HOH . L 3 HOH L 5 81 30 HOH HOH . L 3 HOH L 6 82 35 HOH HOH . L 3 HOH L 7 83 39 HOH HOH . L 3 HOH L 8 84 44 HOH HOH . L 3 HOH L 9 85 47 HOH HOH . M 3 HOH M 1 77 2 HOH HOH . M 3 HOH M 2 78 4 HOH HOH . M 3 HOH M 3 79 13 HOH HOH . M 3 HOH M 4 80 17 HOH HOH . M 3 HOH M 5 81 19 HOH HOH . M 3 HOH M 6 82 37 HOH HOH . M 3 HOH M 7 83 40 HOH HOH . M 3 HOH M 8 84 43 HOH HOH . M 3 HOH M 9 85 51 HOH HOH . M 3 HOH M 10 86 52 HOH HOH . N 3 HOH N 1 77 9 HOH HOH . N 3 HOH N 2 78 14 HOH HOH . N 3 HOH N 3 79 15 HOH HOH . N 3 HOH N 4 80 16 HOH HOH . N 3 HOH N 5 81 22 HOH HOH . N 3 HOH N 6 82 25 HOH HOH . N 3 HOH N 7 83 31 HOH HOH . N 3 HOH N 8 84 34 HOH HOH . N 3 HOH N 9 85 45 HOH HOH . N 3 HOH N 10 86 46 HOH HOH . N 3 HOH N 11 87 50 HOH HOH . N 3 HOH N 12 88 55 HOH HOH . O 3 HOH O 1 77 1 HOH HOH . O 3 HOH O 2 78 3 HOH HOH . O 3 HOH O 3 79 6 HOH HOH . O 3 HOH O 4 80 20 HOH HOH . O 3 HOH O 5 81 23 HOH HOH . O 3 HOH O 6 82 27 HOH HOH . O 3 HOH O 7 83 29 HOH HOH . O 3 HOH O 8 84 33 HOH HOH . O 3 HOH O 9 85 41 HOH HOH . O 3 HOH O 10 86 48 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 DCW . . . J 2 7.347 -7.519 30.954 1 53.75 ? N1 DCW 159 O 1 HETATM 2 O O1 DCW . . . J 2 5.646 -8.887 31.464 1 59.62 ? O1 DCW 159 O 1 HETATM 3 C C1 DCW . . . J 2 6.104 -7.999 30.751 1 58.75 ? C1 DCW 159 O 1 HETATM 4 C C2 DCW . . . J 2 7.622 -6.525 32.005 1 55.09 ? C2 DCW 159 O 1 HETATM 5 N N2 DCW . . . J 2 5.409 -7.456 29.732 1 62.25 ? N2 DCW 159 O 1 HETATM 6 C C3 DCW . . . J 2 6.318 -5.901 32.505 1 58.71 ? C3 DCW 159 O 1 HETATM 7 C C7 DCW . . . J 2 8.341 -7.189 33.181 1 54.83 ? C7 DCW 159 O 1 HETATM 8 C C4 DCW . . . J 2 6.675 -4.784 33.482 1 61.96 ? C4 DCW 159 O 1 HETATM 9 C C5 DCW . . . J 2 7.503 -5.291 34.671 1 60.77 ? C5 DCW 159 O 1 HETATM 10 C C6 DCW . . . J 2 8.692 -6.164 34.263 1 56.47 ? C6 DCW 159 O 1 HETATM 11 C C8 DCW . . . J 2 4.053 -7.827 29.353 1 67.46 ? C8 DCW 159 O 1 HETATM 12 C C9 DCW . . . J 2 3.41 -6.645 28.617 1 70.46 ? C9 DCW 159 O 1 HETATM 13 C C13 DCW . . . J 2 4.037 -9.1 28.494 1 65.98 ? C13 DCW 159 O 1 HETATM 14 C C10 DCW . . . J 2 2.024 -6.98 28.061 1 74.87 ? C10 DCW 159 O 1 HETATM 15 C C11 DCW . . . J 2 2.058 -8.227 27.17 1 72.83 ? C11 DCW 159 O 1 HETATM 16 C C12 DCW . . . J 2 2.653 -9.421 27.922 1 70.62 ? C12 DCW 159 O 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 16 #