data_3U3K
#
_model_server_result.job_id            g4XQixz6sU28tJbduN0EJQ 
_model_server_result.datetime_utc      '2024-11-07 04:34:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3u3k 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":2001}' 
#
_entry.id    3U3K 
#
_exptl.entry_id    3U3K 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-3'-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3U3K 
_cell.length_a            72.176 
_cell.length_b            81.273 
_cell.length_c            121.76 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3U3K 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                A3P 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-3'-5'-DIPHOSPHATE" 
_chem_comp.type              'rna linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P1 O1P A3P doub 21 n n 
P1 O2P A3P sing 22 n n 
P1 O3P A3P sing 23 n n 
P1 O3' A3P sing 24 n n 
O2P HOP2 A3P sing 25 n n 
O3P HOP3 A3P sing 26 n n 
P2 O4P A3P doub 27 n n 
P2 O5P A3P sing 28 n n 
P2 O6P A3P sing 29 n n 
P2 O5' A3P sing 30 n n 
O5P HOP5 A3P sing 31 n n 
O6P HOP6 A3P sing 32 n n 
O5' C5' A3P sing 33 n n 
C5' C4' A3P sing 34 n n 
C5' "H5'1" A3P sing 35 n n 
C5' "H5'2" A3P sing 36 n n 
C4' O4' A3P sing 37 n n 
C4' C3' A3P sing 38 n n 
C4' H4' A3P sing 39 n n 
O4' C1' A3P sing 40 n n 
C3' O3' A3P sing 41 n n 
C3' C2' A3P sing 42 n n 
C3' H3' A3P sing 43 n n 
C2' O2' A3P sing 44 n n 
C2' C1' A3P sing 45 n n 
C2' H2' A3P sing 46 n n 
O2' HO2' A3P sing 47 n n 
C1' N9 A3P sing 48 n n 
C1' H1' A3P sing 49 n n 
N9 C8 A3P sing 50 n y 
N9 C4 A3P sing 51 n y 
C8 N7 A3P doub 52 n y 
C8 H8 A3P sing 53 n n 
N7 C5 A3P sing 54 n y 
C5 C6 A3P sing 55 n y 
C5 C4 A3P doub 56 n y 
C6 N6 A3P sing 57 n n 
C6 N1 A3P doub 58 n y 
N6 HN61 A3P sing 59 n n 
N6 HN62 A3P sing 60 n n 
N1 C2 A3P sing 61 n y 
C2 N3 A3P doub 62 n y 
C2 H2 A3P sing 63 n n 
N3 C4 A3P sing 64 n y 
#
_atom_sites.entry_id                     3U3K 
_atom_sites.fract_transf_matrix[1][1]    0.013855 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012304 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008213 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 A3P A 1 2001 2001 A3P A3P . 
D 3 03V A 1 2002 2002 03V 03V . 
E 2 A3P B 1 2001 2001 A3P A3P . 
F 3 03V B 1 2002 2002 03V 03V . 
G 4 HOH A 1 296 1 HOH HOH . 
G 4 HOH A 2 297 2 HOH HOH . 
G 4 HOH A 3 298 3 HOH HOH . 
G 4 HOH A 4 299 4 HOH HOH . 
G 4 HOH A 5 300 11 HOH HOH . 
G 4 HOH A 6 301 12 HOH HOH . 
G 4 HOH A 7 302 13 HOH HOH . 
G 4 HOH A 8 303 14 HOH HOH . 
G 4 HOH A 9 304 15 HOH HOH . 
G 4 HOH A 10 305 16 HOH HOH . 
G 4 HOH A 11 306 17 HOH HOH . 
G 4 HOH A 12 307 18 HOH HOH . 
G 4 HOH A 13 308 19 HOH HOH . 
G 4 HOH A 14 309 28 HOH HOH . 
G 4 HOH A 15 310 29 HOH HOH . 
G 4 HOH A 16 311 30 HOH HOH . 
G 4 HOH A 17 312 36 HOH HOH . 
G 4 HOH A 18 313 41 HOH HOH . 
G 4 HOH A 19 314 42 HOH HOH . 
G 4 HOH A 20 315 44 HOH HOH . 
G 4 HOH A 21 316 46 HOH HOH . 
G 4 HOH A 22 317 47 HOH HOH . 
G 4 HOH A 23 318 51 HOH HOH . 
G 4 HOH A 24 319 53 HOH HOH . 
G 4 HOH A 25 320 56 HOH HOH . 
G 4 HOH A 26 321 65 HOH HOH . 
G 4 HOH A 27 322 66 HOH HOH . 
G 4 HOH A 28 323 71 HOH HOH . 
G 4 HOH A 29 324 72 HOH HOH . 
G 4 HOH A 30 325 80 HOH HOH . 
G 4 HOH A 31 326 83 HOH HOH . 
G 4 HOH A 32 327 85 HOH HOH . 
G 4 HOH A 33 328 87 HOH HOH . 
G 4 HOH A 34 329 94 HOH HOH . 
G 4 HOH A 35 330 103 HOH HOH . 
G 4 HOH A 36 331 104 HOH HOH . 
G 4 HOH A 37 332 105 HOH HOH . 
G 4 HOH A 38 333 106 HOH HOH . 
G 4 HOH A 39 334 108 HOH HOH . 
G 4 HOH A 40 335 109 HOH HOH . 
G 4 HOH A 41 336 110 HOH HOH . 
G 4 HOH A 42 337 111 HOH HOH . 
G 4 HOH A 43 338 112 HOH HOH . 
G 4 HOH A 44 339 113 HOH HOH . 
G 4 HOH A 45 340 114 HOH HOH . 
G 4 HOH A 46 341 115 HOH HOH . 
G 4 HOH A 47 342 117 HOH HOH . 
G 4 HOH A 48 343 118 HOH HOH . 
G 4 HOH A 49 344 122 HOH HOH . 
G 4 HOH A 50 345 124 HOH HOH . 
G 4 HOH A 51 346 126 HOH HOH . 
G 4 HOH A 52 347 127 HOH HOH . 
G 4 HOH A 53 348 128 HOH HOH . 
G 4 HOH A 54 349 129 HOH HOH . 
G 4 HOH A 55 350 130 HOH HOH . 
G 4 HOH A 56 351 131 HOH HOH . 
G 4 HOH A 57 352 132 HOH HOH . 
G 4 HOH A 58 353 156 HOH HOH . 
G 4 HOH A 59 354 157 HOH HOH . 
G 4 HOH A 60 355 159 HOH HOH . 
H 4 HOH B 1 296 5 HOH HOH . 
H 4 HOH B 2 297 6 HOH HOH . 
H 4 HOH B 3 298 7 HOH HOH . 
H 4 HOH B 4 299 8 HOH HOH . 
H 4 HOH B 5 300 9 HOH HOH . 
H 4 HOH B 6 301 10 HOH HOH . 
H 4 HOH B 7 302 21 HOH HOH . 
H 4 HOH B 8 303 22 HOH HOH . 
H 4 HOH B 9 304 23 HOH HOH . 
H 4 HOH B 10 305 24 HOH HOH . 
H 4 HOH B 11 306 26 HOH HOH . 
H 4 HOH B 12 307 27 HOH HOH . 
H 4 HOH B 13 308 32 HOH HOH . 
H 4 HOH B 14 309 34 HOH HOH . 
H 4 HOH B 15 310 37 HOH HOH . 
H 4 HOH B 16 311 38 HOH HOH . 
H 4 HOH B 17 312 39 HOH HOH . 
H 4 HOH B 18 313 40 HOH HOH . 
H 4 HOH B 19 314 48 HOH HOH . 
H 4 HOH B 20 315 50 HOH HOH . 
H 4 HOH B 21 316 54 HOH HOH . 
H 4 HOH B 22 317 55 HOH HOH . 
H 4 HOH B 23 318 58 HOH HOH . 
H 4 HOH B 24 319 60 HOH HOH . 
H 4 HOH B 25 320 62 HOH HOH . 
H 4 HOH B 26 321 64 HOH HOH . 
H 4 HOH B 27 322 67 HOH HOH . 
H 4 HOH B 28 323 69 HOH HOH . 
H 4 HOH B 29 324 73 HOH HOH . 
H 4 HOH B 30 325 77 HOH HOH . 
H 4 HOH B 31 326 78 HOH HOH . 
H 4 HOH B 32 327 79 HOH HOH . 
H 4 HOH B 33 328 84 HOH HOH . 
H 4 HOH B 34 329 88 HOH HOH . 
H 4 HOH B 35 330 97 HOH HOH . 
H 4 HOH B 36 331 99 HOH HOH . 
H 4 HOH B 37 332 100 HOH HOH . 
H 4 HOH B 38 333 133 HOH HOH . 
H 4 HOH B 39 334 134 HOH HOH . 
H 4 HOH B 40 335 135 HOH HOH . 
H 4 HOH B 41 336 137 HOH HOH . 
H 4 HOH B 42 337 138 HOH HOH . 
H 4 HOH B 43 338 139 HOH HOH . 
H 4 HOH B 44 339 143 HOH HOH . 
H 4 HOH B 45 340 146 HOH HOH . 
H 4 HOH B 46 341 147 HOH HOH . 
H 4 HOH B 47 342 148 HOH HOH . 
H 4 HOH B 48 343 149 HOH HOH . 
H 4 HOH B 49 344 151 HOH HOH . 
H 4 HOH B 50 345 152 HOH HOH . 
H 4 HOH B 51 346 153 HOH HOH . 
H 4 HOH B 52 347 154 HOH HOH . 
H 4 HOH B 53 348 158 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P1 A3P . . . C 2 19.901 -0.559 2.987 1 35.51 ? P1 A3P 2001 A 1 
HETATM 2 O O1P A3P . . . C 2 19.033 -0.794 4.188 1 37.72 ? O1P A3P 2001 A 1 
HETATM 3 O O2P A3P . . . C 2 20.573 0.791 3.089 1 29.66 ? O2P A3P 2001 A 1 
HETATM 4 O O3P A3P . . . C 2 20.656 -1.752 2.484 1 28.06 ? O3P A3P 2001 A 1 
HETATM 5 P P2 A3P . . . C 2 16.821 -1.163 -4 1 32.49 ? P2 A3P 2001 A 1 
HETATM 6 O O4P A3P . . . C 2 17.684 -2.368 -4.12 1 31.35 ? O4P A3P 2001 A 1 
HETATM 7 O O5P A3P . . . C 2 15.352 -1.511 -3.713 1 31.49 ? O5P A3P 2001 A 1 
HETATM 8 O O6P A3P . . . C 2 17.028 -0.011 -4.925 1 34.45 ? O6P A3P 2001 A 1 
HETATM 9 O O5' A3P . . . C 2 17.23 -0.407 -2.615 1 29.15 ? O5' A3P 2001 A 1 
HETATM 10 C C5' A3P . . . C 2 17.29 -1.153 -1.394 1 31.95 ? C5' A3P 2001 A 1 
HETATM 11 C C4' A3P . . . C 2 17.6 -0.229 -0.23 1 32.68 ? C4' A3P 2001 A 1 
HETATM 12 O O4' A3P . . . C 2 16.425 0.558 0.034 1 32.42 ? O4' A3P 2001 A 1 
HETATM 13 C C3' A3P . . . C 2 17.994 -0.984 1.036 1 32.66 ? C3' A3P 2001 A 1 
HETATM 14 O O3' A3P . . . C 2 18.748 -0.139 1.887 1 33.27 ? O3' A3P 2001 A 1 
HETATM 15 C C2' A3P . . . C 2 16.663 -1.194 1.65 1 33.26 ? C2' A3P 2001 A 1 
HETATM 16 O O2' A3P . . . C 2 16.782 -1.445 3.047 1 36.96 ? O2' A3P 2001 A 1 
HETATM 17 C C1' A3P . . . C 2 16.051 0.165 1.352 1 34.57 ? C1' A3P 2001 A 1 
HETATM 18 N N9 A3P . . . C 2 14.59 0.141 1.532 1 34.19 ? N9 A3P 2001 A 1 
HETATM 19 C C8 A3P . . . C 2 13.711 -0.782 1.087 1 30.51 ? C8 A3P 2001 A 1 
HETATM 20 N N7 A3P . . . C 2 12.493 -0.397 1.509 1 32.5 ? N7 A3P 2001 A 1 
HETATM 21 C C5 A3P . . . C 2 12.647 0.762 2.203 1 35.87 ? C5 A3P 2001 A 1 
HETATM 22 C C6 A3P . . . C 2 11.775 1.585 2.872 1 34.66 ? C6 A3P 2001 A 1 
HETATM 23 N N6 A3P . . . C 2 10.491 1.285 2.868 1 35.91 ? N6 A3P 2001 A 1 
HETATM 24 N N1 A3P . . . C 2 12.233 2.686 3.48 1 38.19 ? N1 A3P 2001 A 1 
HETATM 25 C C2 A3P . . . C 2 13.571 2.966 3.479 1 38.33 ? C2 A3P 2001 A 1 
HETATM 26 N N3 A3P . . . C 2 14.456 2.182 2.841 1 35.26 ? N3 A3P 2001 A 1 
HETATM 27 C C4 A3P . . . C 2 13.989 1.087 2.208 1 33.32 ? C4 A3P 2001 A 1 
#
_model_server_stats.io_time_ms              79 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    37 
_model_server_stats.query_time_ms           368 
_model_server_stats.encode_time_ms          7 
_model_server_stats.element_count           27 
#