data_3U3L # _model_server_result.job_id OfQ7eaKsmLk0B5BfV37vIw _model_server_result.datetime_utc '2025-04-18 20:55:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3u3l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":236}' # _entry.id 3U3L # _exptl.entry_id 3U3L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3U3L _cell.length_a 69.556 _cell.length_b 69.556 _cell.length_c 86.209 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3U3L _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 5 C CYS 4 1_555 A SG CYS 18 C CYS 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf2 A SG CYS 9 C CYS 8 1_555 A SG CYS 95 C CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf3 A SG CYS 27 C CYS 26 1_555 A SG CYS 88 C CYS 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? disulf ? disulf4 A SG CYS 170 C CYS 169 1_555 A SG CYS 187 C CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? disulf ? disulf5 A SG CYS 210 C CYS 209 1_555 A SG CYS 221 C CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? covale ? covale1 A C ARG 67 C ARG 66 1_555 A N MSE 68 C MSE 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale2 A C MSE 68 C MSE 67 1_555 A N LYS 69 C LYS 68 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? metalc ? metalc1 A OE2 GLU 35 C GLU 34 1_555 C PR PR . C PR 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.343 ? metalc ? metalc2 C PR PR . C PR 234 1_555 D O4 CIT . C CIT 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? metalc ? metalc3 C PR PR . C PR 234 1_555 D O7 CIT . C CIT 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.621 ? metalc ? metalc4 C PR PR . C PR 234 1_555 D O6 CIT . C CIT 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.767 ? metalc ? metalc5 C PR PR . C PR 234 1_555 E O7 CIT . C CIT 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc6 C PR PR . C PR 234 1_555 E O2 CIT . C CIT 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc7 C PR PR . C PR 234 1_555 E O6 CIT . C CIT 236 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.689 ? metalc ? metalc8 C PR PR . C PR 234 1_555 F O HOH . C HOH 371 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc9 C PR PR . C PR 234 1_555 F O HOH . C HOH 381 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.36 ? # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 70 n n C1 O2 CIT sing 71 n n C1 C2 CIT sing 72 n n O2 HO2 CIT sing 73 n n C2 C3 CIT sing 74 n n C2 H21 CIT sing 75 n n C2 H22 CIT sing 76 n n C3 O7 CIT sing 77 n n C3 C4 CIT sing 78 n n C3 C6 CIT sing 79 n n O7 HO7 CIT sing 80 n n C4 C5 CIT sing 81 n n C4 H41 CIT sing 82 n n C4 H42 CIT sing 83 n n C5 O3 CIT doub 84 n n C5 O4 CIT sing 85 n n O4 HO4 CIT sing 86 n n C6 O5 CIT doub 87 n n C6 O6 CIT sing 88 n n O6 HO6 CIT sing 89 n n # _atom_sites.entry_id 3U3L _atom_sites.fract_transf_matrix[1][1] 0.014377 _atom_sites.fract_transf_matrix[1][2] 0.008301 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016601 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0116 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PLM C 1 233 1 PLM PLM . C 3 PR C 1 234 1 PR PR . D 4 CIT C 1 235 1 CIT CIT . E 4 CIT C 1 236 1 CIT CIT . F 5 HOH C 1 237 2 HOH HOH . F 5 HOH C 2 238 3 HOH HOH . F 5 HOH C 3 239 5 HOH HOH . F 5 HOH C 4 240 6 HOH HOH . F 5 HOH C 5 241 7 HOH HOH . F 5 HOH C 6 242 8 HOH HOH . F 5 HOH C 7 243 9 HOH HOH . F 5 HOH C 8 244 10 HOH HOH . F 5 HOH C 9 245 12 HOH HOH . F 5 HOH C 10 246 13 HOH HOH . F 5 HOH C 11 247 14 HOH HOH . F 5 HOH C 12 248 15 HOH HOH . F 5 HOH C 13 249 17 HOH HOH . F 5 HOH C 14 250 18 HOH HOH . F 5 HOH C 15 251 19 HOH HOH . F 5 HOH C 16 252 20 HOH HOH . F 5 HOH C 17 253 21 HOH HOH . F 5 HOH C 18 254 22 HOH HOH . F 5 HOH C 19 255 23 HOH HOH . F 5 HOH C 20 256 24 HOH HOH . F 5 HOH C 21 257 25 HOH HOH . F 5 HOH C 22 258 26 HOH HOH . F 5 HOH C 23 259 27 HOH HOH . F 5 HOH C 24 260 28 HOH HOH . F 5 HOH C 25 261 29 HOH HOH . F 5 HOH C 26 262 30 HOH HOH . F 5 HOH C 27 263 31 HOH HOH . F 5 HOH C 28 264 32 HOH HOH . F 5 HOH C 29 265 33 HOH HOH . F 5 HOH C 30 266 34 HOH HOH . F 5 HOH C 31 267 35 HOH HOH . F 5 HOH C 32 268 37 HOH HOH . F 5 HOH C 33 269 38 HOH HOH . F 5 HOH C 34 270 39 HOH HOH . F 5 HOH C 35 271 40 HOH HOH . F 5 HOH C 36 272 41 HOH HOH . F 5 HOH C 37 273 43 HOH HOH . F 5 HOH C 38 274 45 HOH HOH . F 5 HOH C 39 275 46 HOH HOH . F 5 HOH C 40 276 47 HOH HOH . F 5 HOH C 41 277 48 HOH HOH . F 5 HOH C 42 278 49 HOH HOH . F 5 HOH C 43 279 50 HOH HOH . F 5 HOH C 44 280 51 HOH HOH . F 5 HOH C 45 281 52 HOH HOH . F 5 HOH C 46 282 53 HOH HOH . F 5 HOH C 47 283 54 HOH HOH . F 5 HOH C 48 284 55 HOH HOH . F 5 HOH C 49 285 56 HOH HOH . F 5 HOH C 50 286 57 HOH HOH . F 5 HOH C 51 287 58 HOH HOH . F 5 HOH C 52 288 59 HOH HOH . F 5 HOH C 53 289 60 HOH HOH . F 5 HOH C 54 290 61 HOH HOH . F 5 HOH C 55 291 62 HOH HOH . F 5 HOH C 56 292 63 HOH HOH . F 5 HOH C 57 293 64 HOH HOH . F 5 HOH C 58 294 65 HOH HOH . F 5 HOH C 59 295 66 HOH HOH . F 5 HOH C 60 296 67 HOH HOH . F 5 HOH C 61 297 68 HOH HOH . F 5 HOH C 62 298 69 HOH HOH . F 5 HOH C 63 299 70 HOH HOH . F 5 HOH C 64 300 71 HOH HOH . F 5 HOH C 65 301 72 HOH HOH . F 5 HOH C 66 302 73 HOH HOH . F 5 HOH C 67 303 74 HOH HOH . F 5 HOH C 68 304 75 HOH HOH . F 5 HOH C 69 305 76 HOH HOH . F 5 HOH C 70 306 77 HOH HOH . F 5 HOH C 71 307 78 HOH HOH . F 5 HOH C 72 308 79 HOH HOH . F 5 HOH C 73 309 80 HOH HOH . F 5 HOH C 74 310 81 HOH HOH . F 5 HOH C 75 311 82 HOH HOH . F 5 HOH C 76 312 83 HOH HOH . F 5 HOH C 77 313 84 HOH HOH . F 5 HOH C 78 314 85 HOH HOH . F 5 HOH C 79 315 86 HOH HOH . F 5 HOH C 80 316 87 HOH HOH . F 5 HOH C 81 317 88 HOH HOH . F 5 HOH C 82 318 89 HOH HOH . F 5 HOH C 83 319 90 HOH HOH . F 5 HOH C 84 320 91 HOH HOH . F 5 HOH C 85 321 92 HOH HOH . F 5 HOH C 86 322 93 HOH HOH . F 5 HOH C 87 323 94 HOH HOH . F 5 HOH C 88 324 95 HOH HOH . F 5 HOH C 89 325 97 HOH HOH . F 5 HOH C 90 326 99 HOH HOH . F 5 HOH C 91 327 100 HOH HOH . F 5 HOH C 92 328 102 HOH HOH . F 5 HOH C 93 329 103 HOH HOH . F 5 HOH C 94 330 104 HOH HOH . F 5 HOH C 95 331 105 HOH HOH . F 5 HOH C 96 332 106 HOH HOH . F 5 HOH C 97 333 107 HOH HOH . F 5 HOH C 98 334 109 HOH HOH . F 5 HOH C 99 335 110 HOH HOH . F 5 HOH C 100 336 111 HOH HOH . F 5 HOH C 101 337 113 HOH HOH . F 5 HOH C 102 338 114 HOH HOH . F 5 HOH C 103 339 115 HOH HOH . F 5 HOH C 104 340 118 HOH HOH . F 5 HOH C 105 341 119 HOH HOH . F 5 HOH C 106 342 120 HOH HOH . F 5 HOH C 107 343 121 HOH HOH . F 5 HOH C 108 344 122 HOH HOH . F 5 HOH C 109 345 123 HOH HOH . F 5 HOH C 110 346 124 HOH HOH . F 5 HOH C 111 347 125 HOH HOH . F 5 HOH C 112 348 126 HOH HOH . F 5 HOH C 113 349 127 HOH HOH . F 5 HOH C 114 350 128 HOH HOH . F 5 HOH C 115 351 129 HOH HOH . F 5 HOH C 116 352 130 HOH HOH . F 5 HOH C 117 353 131 HOH HOH . F 5 HOH C 118 354 132 HOH HOH . F 5 HOH C 119 355 133 HOH HOH . F 5 HOH C 120 356 134 HOH HOH . F 5 HOH C 121 357 135 HOH HOH . F 5 HOH C 122 358 136 HOH HOH . F 5 HOH C 123 359 137 HOH HOH . F 5 HOH C 124 360 138 HOH HOH . F 5 HOH C 125 361 139 HOH HOH . F 5 HOH C 126 362 140 HOH HOH . F 5 HOH C 127 363 141 HOH HOH . F 5 HOH C 128 364 142 HOH HOH . F 5 HOH C 129 365 143 HOH HOH . F 5 HOH C 130 366 144 HOH HOH . F 5 HOH C 131 367 145 HOH HOH . F 5 HOH C 132 368 146 HOH HOH . F 5 HOH C 133 369 147 HOH HOH . F 5 HOH C 134 370 148 HOH HOH . F 5 HOH C 135 371 149 HOH HOH . F 5 HOH C 136 372 150 HOH HOH . F 5 HOH C 137 373 152 HOH HOH . F 5 HOH C 138 374 154 HOH HOH . F 5 HOH C 139 375 155 HOH HOH . F 5 HOH C 140 376 156 HOH HOH . F 5 HOH C 141 377 157 HOH HOH . F 5 HOH C 142 378 159 HOH HOH . F 5 HOH C 143 379 160 HOH HOH . F 5 HOH C 144 380 161 HOH HOH . F 5 HOH C 145 381 162 HOH HOH . F 5 HOH C 146 382 164 HOH HOH . F 5 HOH C 147 383 165 HOH HOH . F 5 HOH C 148 384 166 HOH HOH . F 5 HOH C 149 385 168 HOH HOH . F 5 HOH C 150 386 169 HOH HOH . F 5 HOH C 151 387 170 HOH HOH . F 5 HOH C 152 388 171 HOH HOH . F 5 HOH C 153 389 172 HOH HOH . F 5 HOH C 154 390 173 HOH HOH . F 5 HOH C 155 391 174 HOH HOH . F 5 HOH C 156 392 175 HOH HOH . F 5 HOH C 157 393 176 HOH HOH . F 5 HOH C 158 394 177 HOH HOH . F 5 HOH C 159 395 178 HOH HOH . F 5 HOH C 160 396 179 HOH HOH . F 5 HOH C 161 397 180 HOH HOH . F 5 HOH C 162 398 182 HOH HOH . F 5 HOH C 163 399 2 HOH HOH . F 5 HOH C 164 400 3 HOH HOH . F 5 HOH C 165 401 4 HOH HOH . F 5 HOH C 166 402 5 HOH HOH . F 5 HOH C 167 403 6 HOH HOH . F 5 HOH C 168 404 7 HOH HOH . F 5 HOH C 169 405 8 HOH HOH . F 5 HOH C 170 406 9 HOH HOH . F 5 HOH C 171 407 10 HOH HOH . F 5 HOH C 172 408 11 HOH HOH . F 5 HOH C 173 409 12 HOH HOH . F 5 HOH C 174 410 14 HOH HOH . F 5 HOH C 175 411 15 HOH HOH . F 5 HOH C 176 412 16 HOH HOH . F 5 HOH C 177 413 17 HOH HOH . F 5 HOH C 178 414 18 HOH HOH . F 5 HOH C 179 415 19 HOH HOH . F 5 HOH C 180 416 20 HOH HOH . F 5 HOH C 181 417 21 HOH HOH . F 5 HOH C 182 418 22 HOH HOH . F 5 HOH C 183 419 23 HOH HOH . F 5 HOH C 184 420 24 HOH HOH . F 5 HOH C 185 421 25 HOH HOH . F 5 HOH C 186 422 26 HOH HOH . F 5 HOH C 187 423 27 HOH HOH . F 5 HOH C 188 424 28 HOH HOH . F 5 HOH C 189 425 29 HOH HOH . F 5 HOH C 190 426 30 HOH HOH . F 5 HOH C 191 427 31 HOH HOH . F 5 HOH C 192 428 32 HOH HOH . F 5 HOH C 193 429 33 HOH HOH . F 5 HOH C 194 430 34 HOH HOH . F 5 HOH C 195 431 35 HOH HOH . F 5 HOH C 196 432 36 HOH HOH . F 5 HOH C 197 433 37 HOH HOH . F 5 HOH C 198 434 38 HOH HOH . F 5 HOH C 199 435 39 HOH HOH . F 5 HOH C 200 436 41 HOH HOH . F 5 HOH C 201 437 42 HOH HOH . F 5 HOH C 202 438 43 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . E 4 33.471 11.232 7.758 1 32.66 ? C1 CIT 236 C 1 HETATM 2 O O1 CIT . . . E 4 34.466 10.848 7.103 1 38.55 ? O1 CIT 236 C 1 HETATM 3 O O2 CIT . . . E 4 33.652 11.902 8.802 1 29.38 ? O2 CIT 236 C 1 HETATM 4 C C2 CIT . . . E 4 32.083 10.878 7.273 1 26.1 ? C2 CIT 236 C 1 HETATM 5 C C3 CIT . . . E 4 31.022 11.834 7.803 1 23.87 ? C3 CIT 236 C 1 HETATM 6 O O7 CIT . . . E 4 31.046 11.831 9.264 1 18.55 ? O7 CIT 236 C 1 HETATM 7 C C4 CIT . . . E 4 29.683 11.354 7.232 1 23.22 ? C4 CIT 236 C 1 HETATM 8 C C5 CIT . . . E 4 28.539 12.288 7.556 1 26.8 ? C5 CIT 236 C 1 HETATM 9 O O3 CIT . . . E 4 28.578 13.04 8.559 1 28.44 ? O3 CIT 236 C 1 HETATM 10 O O4 CIT . . . E 4 27.539 12.323 6.803 1 24.6 ? O4 CIT 236 C 1 HETATM 11 C C6 CIT . . . E 4 31.322 13.226 7.248 1 27.85 ? C6 CIT 236 C 1 HETATM 12 O O5 CIT . . . E 4 31.224 13.462 6.02 1 29.09 ? O5 CIT 236 C 1 HETATM 13 O O6 CIT . . . E 4 31.683 14.157 8.006 1 27.91 ? O6 CIT 236 C 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 296 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 13 #