data_3U3M # _model_server_result.job_id dqs1xTbH0Uu9pTF5cDwLVQ _model_server_result.datetime_utc '2024-10-18 15:30:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3u3m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":296}' # _entry.id 3U3M # _exptl.entry_id 3U3M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 427.201 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-3'-5'-DIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3U3M _cell.length_a 72.634 _cell.length_b 122.781 _cell.length_c 44.764 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3U3M _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H15 N5 O10 P2' _chem_comp.formula_weight 427.201 _chem_comp.id A3P _chem_comp.mon_nstd_flag n _chem_comp.name "ADENOSINE-3'-5'-DIPHOSPHATE" _chem_comp.type 'rna linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P1 O1P A3P doub 21 n n P1 O2P A3P sing 22 n n P1 O3P A3P sing 23 n n P1 O3' A3P sing 24 n n O2P HOP2 A3P sing 25 n n O3P HOP3 A3P sing 26 n n P2 O4P A3P doub 27 n n P2 O5P A3P sing 28 n n P2 O6P A3P sing 29 n n P2 O5' A3P sing 30 n n O5P HOP5 A3P sing 31 n n O6P HOP6 A3P sing 32 n n O5' C5' A3P sing 33 n n C5' C4' A3P sing 34 n n C5' "H5'1" A3P sing 35 n n C5' "H5'2" A3P sing 36 n n C4' O4' A3P sing 37 n n C4' C3' A3P sing 38 n n C4' H4' A3P sing 39 n n O4' C1' A3P sing 40 n n C3' O3' A3P sing 41 n n C3' C2' A3P sing 42 n n C3' H3' A3P sing 43 n n C2' O2' A3P sing 44 n n C2' C1' A3P sing 45 n n C2' H2' A3P sing 46 n n O2' HO2' A3P sing 47 n n C1' N9 A3P sing 48 n n C1' H1' A3P sing 49 n n N9 C8 A3P sing 50 n y N9 C4 A3P sing 51 n y C8 N7 A3P doub 52 n y C8 H8 A3P sing 53 n n N7 C5 A3P sing 54 n y C5 C6 A3P sing 55 n y C5 C4 A3P doub 56 n y C6 N6 A3P sing 57 n n C6 N1 A3P doub 58 n y N6 HN61 A3P sing 59 n n N6 HN62 A3P sing 60 n n N1 C2 A3P sing 61 n y C2 N3 A3P doub 62 n y C2 H2 A3P sing 63 n n N3 C4 A3P sing 64 n y # _atom_sites.entry_id 3U3M _atom_sites.fract_transf_matrix[1][1] 0.013768 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008145 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022339 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 A3P A 1 296 5 A3P A3P . C 3 3QV A 1 297 1 3QV 3QV . D 4 HOH A 1 298 1 HOH HOH . D 4 HOH A 2 299 2 HOH HOH . D 4 HOH A 3 300 3 HOH HOH . D 4 HOH A 4 301 4 HOH HOH . D 4 HOH A 5 302 5 HOH HOH . D 4 HOH A 6 303 6 HOH HOH . D 4 HOH A 7 304 7 HOH HOH . D 4 HOH A 8 305 8 HOH HOH . D 4 HOH A 9 306 9 HOH HOH . D 4 HOH A 10 307 10 HOH HOH . D 4 HOH A 11 308 11 HOH HOH . D 4 HOH A 12 309 12 HOH HOH . D 4 HOH A 13 310 13 HOH HOH . D 4 HOH A 14 311 14 HOH HOH . D 4 HOH A 15 312 15 HOH HOH . D 4 HOH A 16 313 16 HOH HOH . D 4 HOH A 17 314 17 HOH HOH . D 4 HOH A 18 315 18 HOH HOH . D 4 HOH A 19 316 19 HOH HOH . D 4 HOH A 20 317 20 HOH HOH . D 4 HOH A 21 318 21 HOH HOH . D 4 HOH A 22 319 22 HOH HOH . D 4 HOH A 23 320 23 HOH HOH . D 4 HOH A 24 321 24 HOH HOH . D 4 HOH A 25 322 25 HOH HOH . D 4 HOH A 26 323 26 HOH HOH . D 4 HOH A 27 324 27 HOH HOH . D 4 HOH A 28 325 28 HOH HOH . D 4 HOH A 29 326 29 HOH HOH . D 4 HOH A 30 327 30 HOH HOH . D 4 HOH A 31 328 31 HOH HOH . D 4 HOH A 32 329 32 HOH HOH . D 4 HOH A 33 330 33 HOH HOH . D 4 HOH A 34 331 34 HOH HOH . D 4 HOH A 35 332 35 HOH HOH . D 4 HOH A 36 333 36 HOH HOH . D 4 HOH A 37 334 37 HOH HOH . D 4 HOH A 38 335 38 HOH HOH . D 4 HOH A 39 336 39 HOH HOH . D 4 HOH A 40 337 40 HOH HOH . D 4 HOH A 41 338 41 HOH HOH . D 4 HOH A 42 339 42 HOH HOH . D 4 HOH A 43 340 43 HOH HOH . D 4 HOH A 44 341 44 HOH HOH . D 4 HOH A 45 342 45 HOH HOH . D 4 HOH A 46 343 46 HOH HOH . D 4 HOH A 47 344 47 HOH HOH . D 4 HOH A 48 345 48 HOH HOH . D 4 HOH A 49 346 49 HOH HOH . D 4 HOH A 50 347 50 HOH HOH . D 4 HOH A 51 348 51 HOH HOH . D 4 HOH A 52 349 52 HOH HOH . D 4 HOH A 53 350 53 HOH HOH . D 4 HOH A 54 351 54 HOH HOH . D 4 HOH A 55 352 55 HOH HOH . D 4 HOH A 56 353 56 HOH HOH . D 4 HOH A 57 354 57 HOH HOH . D 4 HOH A 58 355 58 HOH HOH . D 4 HOH A 59 356 59 HOH HOH . D 4 HOH A 60 357 60 HOH HOH . D 4 HOH A 61 358 61 HOH HOH . D 4 HOH A 62 359 62 HOH HOH . D 4 HOH A 63 360 64 HOH HOH . D 4 HOH A 64 361 65 HOH HOH . D 4 HOH A 65 362 66 HOH HOH . D 4 HOH A 66 363 67 HOH HOH . D 4 HOH A 67 364 68 HOH HOH . D 4 HOH A 68 365 69 HOH HOH . D 4 HOH A 69 366 70 HOH HOH . D 4 HOH A 70 367 71 HOH HOH . D 4 HOH A 71 368 72 HOH HOH . D 4 HOH A 72 369 73 HOH HOH . D 4 HOH A 73 370 74 HOH HOH . D 4 HOH A 74 371 75 HOH HOH . D 4 HOH A 75 372 76 HOH HOH . D 4 HOH A 76 373 77 HOH HOH . D 4 HOH A 77 374 78 HOH HOH . D 4 HOH A 78 375 80 HOH HOH . D 4 HOH A 79 376 81 HOH HOH . D 4 HOH A 80 377 82 HOH HOH . D 4 HOH A 81 378 83 HOH HOH . D 4 HOH A 82 379 84 HOH HOH . D 4 HOH A 83 380 85 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 A3P . . . B 2 16.281 -6.957 -3.151 1 25.55 ? P1 A3P 296 A 1 HETATM 2 O O1P A3P . . . B 2 15.542 -7.553 -4.345 1 24.03 ? O1P A3P 296 A 1 HETATM 3 O O2P A3P . . . B 2 17.135 -5.835 -3.679 1 28.78 ? O2P A3P 296 A 1 HETATM 4 O O3P A3P . . . B 2 15.606 -6.681 -1.826 1 22.22 ? O3P A3P 296 A 1 HETATM 5 P P2 A3P . . . B 2 19.411 -13.966 -3.203 1 25.85 ? P2 A3P 296 A 1 HETATM 6 O O4P A3P . . . B 2 18.633 -14.213 -4.5 1 25.37 ? O4P A3P 296 A 1 HETATM 7 O O5P A3P . . . B 2 20.847 -13.683 -3.5 1 29.09 ? O5P A3P 296 A 1 HETATM 8 O O6P A3P . . . B 2 19.13 -14.774 -1.973 1 24.98 ? O6P A3P 296 A 1 HETATM 9 O O5' A3P . . . B 2 19.023 -12.51 -2.613 1 30.05 ? O5' A3P 296 A 1 HETATM 10 C C5' A3P . . . B 2 18.591 -11.428 -3.451 1 27.47 ? C5' A3P 296 A 1 HETATM 11 C C4' A3P . . . B 2 18.537 -10.129 -2.632 1 28.43 ? C4' A3P 296 A 1 HETATM 12 O O4' A3P . . . B 2 19.801 -9.788 -2.001 1 25.73 ? O4' A3P 296 A 1 HETATM 13 C C3' A3P . . . B 2 18.153 -8.951 -3.519 1 28.13 ? C3' A3P 296 A 1 HETATM 14 O O3' A3P . . . B 2 17.307 -8.145 -2.658 1 28.51 ? O3' A3P 296 A 1 HETATM 15 C C2' A3P . . . B 2 19.531 -8.347 -3.798 1 26.98 ? C2' A3P 296 A 1 HETATM 16 O O2' A3P . . . B 2 19.465 -6.985 -4.233 1 30.17 ? O2' A3P 296 A 1 HETATM 17 C C1' A3P . . . B 2 20.176 -8.472 -2.422 1 26.31 ? C1' A3P 296 A 1 HETATM 18 N N9 A3P . . . B 2 21.654 -8.304 -2.384 1 29.05 ? N9 A3P 296 A 1 HETATM 19 C C8 A3P . . . B 2 22.58 -8.844 -3.22 1 29.57 ? C8 A3P 296 A 1 HETATM 20 N N7 A3P . . . B 2 23.81 -8.455 -2.827 1 30.91 ? N7 A3P 296 A 1 HETATM 21 C C5 A3P . . . B 2 23.625 -7.633 -1.726 1 30.19 ? C5 A3P 296 A 1 HETATM 22 C C6 A3P . . . B 2 24.485 -6.879 -0.907 1 30.46 ? C6 A3P 296 A 1 HETATM 23 N N6 A3P . . . B 2 25.834 -6.876 -1.107 1 22.23 ? N6 A3P 296 A 1 HETATM 24 N N1 A3P . . . B 2 23.941 -6.112 0.096 1 33.92 ? N1 A3P 296 A 1 HETATM 25 C C2 A3P . . . B 2 22.602 -6.048 0.325 1 28.45 ? C2 A3P 296 A 1 HETATM 26 N N3 A3P . . . B 2 21.779 -6.748 -0.456 1 31.48 ? N3 A3P 296 A 1 HETATM 27 C C4 A3P . . . B 2 22.274 -7.547 -1.468 1 28.93 ? C4 A3P 296 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 27 #