data_3U3R # _model_server_result.job_id '_r9miuLycrD8iPTolwWmqg' _model_server_result.datetime_utc '2024-11-27 04:12:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3u3r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 3U3R # _exptl.entry_id 3U3R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 139.109 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description P-NITROPHENOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3U3R _cell.length_a 72.38 _cell.length_b 80.27 _cell.length_c 123.16 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3U3R _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 D N N # _chem_comp.formula 'C6 H5 N O3' _chem_comp.formula_weight 139.109 _chem_comp.id NPO _chem_comp.mon_nstd_flag . _chem_comp.name P-NITROPHENOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NPO doub 281 n y C1 C6 NPO sing 282 n y C1 N1 NPO sing 283 n n C2 C3 NPO sing 284 n y C2 H2 NPO sing 285 n n C3 C4 NPO doub 286 n y C3 H3 NPO sing 287 n n C4 C5 NPO sing 288 n y C4 OH NPO sing 289 n n C5 C6 NPO doub 290 n y C5 H5 NPO sing 291 n n C6 H6 NPO sing 292 n n OH HO NPO sing 293 n n N1 O2 NPO sing 294 n n N1 O3 NPO doub 295 n n # _atom_sites.entry_id 3U3R _atom_sites.fract_transf_matrix[1][1] 0.013816 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012458 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00812 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NPO A 1 300 300 NPO NPO . C 3 A3P A 1 301 301 A3P A3P . D 2 NPO A 1 302 302 NPO NPO . E 4 HOH A 1 296 1 HOH HOH . E 4 HOH A 2 297 2 HOH HOH . E 4 HOH A 3 298 3 HOH HOH . E 4 HOH A 4 299 11 HOH HOH . E 4 HOH A 5 303 12 HOH HOH . E 4 HOH A 6 304 13 HOH HOH . E 4 HOH A 7 305 14 HOH HOH . E 4 HOH A 8 306 16 HOH HOH . E 4 HOH A 9 307 18 HOH HOH . E 4 HOH A 10 308 19 HOH HOH . E 4 HOH A 11 309 28 HOH HOH . E 4 HOH A 12 310 29 HOH HOH . E 4 HOH A 13 311 36 HOH HOH . E 4 HOH A 14 312 41 HOH HOH . E 4 HOH A 15 313 44 HOH HOH . E 4 HOH A 16 314 46 HOH HOH . E 4 HOH A 17 315 47 HOH HOH . E 4 HOH A 18 316 51 HOH HOH . E 4 HOH A 19 317 56 HOH HOH . E 4 HOH A 20 318 65 HOH HOH . E 4 HOH A 21 319 66 HOH HOH . E 4 HOH A 22 320 72 HOH HOH . E 4 HOH A 23 321 83 HOH HOH . E 4 HOH A 24 322 85 HOH HOH . E 4 HOH A 25 323 87 HOH HOH . E 4 HOH A 26 324 94 HOH HOH . E 4 HOH A 27 325 103 HOH HOH . E 4 HOH A 28 326 104 HOH HOH . E 4 HOH A 29 327 105 HOH HOH . E 4 HOH A 30 328 106 HOH HOH . E 4 HOH A 31 329 110 HOH HOH . E 4 HOH A 32 330 118 HOH HOH . E 4 HOH A 33 331 122 HOH HOH . E 4 HOH A 34 332 129 HOH HOH . E 4 HOH A 35 333 130 HOH HOH . E 4 HOH A 36 334 160 HOH HOH . E 4 HOH A 37 335 161 HOH HOH . E 4 HOH A 38 336 162 HOH HOH . E 4 HOH A 39 337 163 HOH HOH . E 4 HOH A 40 338 164 HOH HOH . E 4 HOH A 41 339 165 HOH HOH . E 4 HOH A 42 340 166 HOH HOH . E 4 HOH A 43 341 167 HOH HOH . E 4 HOH A 44 342 168 HOH HOH . E 4 HOH A 45 343 169 HOH HOH . E 4 HOH A 46 344 170 HOH HOH . E 4 HOH A 47 345 171 HOH HOH . E 4 HOH A 48 346 172 HOH HOH . E 4 HOH A 49 347 173 HOH HOH . E 4 HOH A 50 348 175 HOH HOH . E 4 HOH A 51 349 176 HOH HOH . E 4 HOH A 52 350 177 HOH HOH . E 4 HOH A 53 351 178 HOH HOH . E 4 HOH A 54 352 180 HOH HOH . E 4 HOH A 55 353 181 HOH HOH . E 4 HOH A 56 354 182 HOH HOH . E 4 HOH A 57 355 183 HOH HOH . E 4 HOH A 58 356 184 HOH HOH . E 4 HOH A 59 357 185 HOH HOH . E 4 HOH A 60 358 186 HOH HOH . E 4 HOH A 61 359 187 HOH HOH . E 4 HOH A 62 360 188 HOH HOH . E 4 HOH A 63 361 191 HOH HOH . E 4 HOH A 64 362 192 HOH HOH . E 4 HOH A 65 363 193 HOH HOH . E 4 HOH A 66 364 194 HOH HOH . E 4 HOH A 67 365 195 HOH HOH . E 4 HOH A 68 366 196 HOH HOH . E 4 HOH A 69 367 197 HOH HOH . E 4 HOH A 70 368 198 HOH HOH . E 4 HOH A 71 369 199 HOH HOH . E 4 HOH A 72 370 200 HOH HOH . E 4 HOH A 73 371 201 HOH HOH . E 4 HOH A 74 372 202 HOH HOH . E 4 HOH A 75 373 203 HOH HOH . E 4 HOH A 76 374 204 HOH HOH . E 4 HOH A 77 375 205 HOH HOH . E 4 HOH A 78 376 206 HOH HOH . E 4 HOH A 79 377 207 HOH HOH . E 4 HOH A 80 378 208 HOH HOH . E 4 HOH A 81 379 209 HOH HOH . E 4 HOH A 82 380 210 HOH HOH . E 4 HOH A 83 381 211 HOH HOH . E 4 HOH A 84 382 213 HOH HOH . E 4 HOH A 85 383 214 HOH HOH . E 4 HOH A 86 384 215 HOH HOH . E 4 HOH A 87 385 216 HOH HOH . E 4 HOH A 88 386 217 HOH HOH . E 4 HOH A 89 387 218 HOH HOH . E 4 HOH A 90 388 219 HOH HOH . E 4 HOH A 91 389 220 HOH HOH . E 4 HOH A 92 390 221 HOH HOH . E 4 HOH A 93 391 222 HOH HOH . E 4 HOH A 94 392 223 HOH HOH . E 4 HOH A 95 393 224 HOH HOH . E 4 HOH A 96 394 225 HOH HOH . E 4 HOH A 97 395 226 HOH HOH . E 4 HOH A 98 396 227 HOH HOH . E 4 HOH A 99 397 228 HOH HOH . E 4 HOH A 100 398 230 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NPO . . . D 2 13.429 -32.301 11.028 1 55.48 ? C1 NPO 302 A 1 HETATM 2 C C2 NPO . . . D 2 13.328 -33.535 11.738 1 53.75 ? C2 NPO 302 A 1 HETATM 3 C C3 NPO . . . D 2 12.411 -34.506 11.278 1 53.58 ? C3 NPO 302 A 1 HETATM 4 C C4 NPO . . . D 2 11.576 -34.201 10.155 1 55.56 ? C4 NPO 302 A 1 HETATM 5 C C5 NPO . . . D 2 11.647 -32.938 9.523 1 56.3 ? C5 NPO 302 A 1 HETATM 6 C C6 NPO . . . D 2 12.609 -32 9.935 1 55.57 ? C6 NPO 302 A 1 HETATM 7 O OH NPO . . . D 2 10.593 -35.072 9.696 1 56.75 ? OH NPO 302 A 1 HETATM 8 N N1 NPO . . . D 2 14.29 -31.246 11.447 1 57.47 ? N1 NPO 302 A 1 HETATM 9 O O2 NPO . . . D 2 15.171 -31.44 12.389 1 57.61 ? O2 NPO 302 A 1 HETATM 10 O O3 NPO . . . D 2 14.163 -30.146 10.919 1 59.19 ? O3 NPO 302 A 1 # _model_server_stats.io_time_ms 77 _model_server_stats.parse_time_ms 85 _model_server_stats.create_model_time_ms 117 _model_server_stats.query_time_ms 330 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 10 #