data_3U3U # _model_server_result.job_id bs4ycLhRBxHWTEf98AMgtA _model_server_result.datetime_utc '2024-11-24 05:11:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3u3u # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":235}' # _entry.id 3U3U # _exptl.entry_id 3U3U _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 192.124 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CITRIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3U3U _cell.length_a 69.774 _cell.length_b 69.774 _cell.length_c 85.473 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3U3U _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 5 C CYS 4 1_555 A SG CYS 18 C CYS 17 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? disulf ? disulf2 A SG CYS 9 C CYS 8 1_555 A SG CYS 95 C CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.002 ? disulf ? disulf3 A SG CYS 27 C CYS 26 1_555 A SG CYS 88 C CYS 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf4 A SG CYS 170 C CYS 169 1_555 A SG CYS 187 C CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? disulf ? disulf5 A SG CYS 210 C CYS 209 1_555 A SG CYS 221 C CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc1 A OE2 GLU 35 C GLU 34 1_555 B PR PR . C PR 233 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.838 ? metalc ? metalc2 B PR PR . C PR 233 1_555 C O4 CIT . C CIT 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc3 B PR PR . C PR 233 1_555 C O6 CIT . C CIT 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.712 ? metalc ? metalc4 B PR PR . C PR 233 1_555 C O7 CIT . C CIT 234 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.269 ? metalc ? metalc5 B PR PR . C PR 233 1_555 D O6 CIT . C CIT 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.948 ? metalc ? metalc6 B PR PR . C PR 233 1_555 D O7 CIT . C CIT 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.968 ? metalc ? metalc7 B PR PR . C PR 233 1_555 D O2 CIT . C CIT 235 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.138 ? # _chem_comp.formula 'C6 H8 O7' _chem_comp.formula_weight 192.124 _chem_comp.id CIT _chem_comp.mon_nstd_flag . _chem_comp.name 'CITRIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 CIT doub 70 n n C1 O2 CIT sing 71 n n C1 C2 CIT sing 72 n n O2 HO2 CIT sing 73 n n C2 C3 CIT sing 74 n n C2 H21 CIT sing 75 n n C2 H22 CIT sing 76 n n C3 O7 CIT sing 77 n n C3 C4 CIT sing 78 n n C3 C6 CIT sing 79 n n O7 HO7 CIT sing 80 n n C4 C5 CIT sing 81 n n C4 H41 CIT sing 82 n n C4 H42 CIT sing 83 n n C5 O3 CIT doub 84 n n C5 O4 CIT sing 85 n n O4 HO4 CIT sing 86 n n C6 O5 CIT doub 87 n n C6 O6 CIT sing 88 n n O6 HO6 CIT sing 89 n n # _atom_sites.entry_id 3U3U _atom_sites.fract_transf_matrix[1][1] 0.014332 _atom_sites.fract_transf_matrix[1][2] 0.008275 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016549 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.0117 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PR C 1 233 1 PR PR . C 3 CIT C 1 234 1 CIT CIT . D 3 CIT C 1 235 1 CIT CIT . E 4 EAH C 1 236 1 EAH EAH . F 5 HOH C 1 237 1 HOH HOH . F 5 HOH C 2 238 2 HOH HOH . F 5 HOH C 3 239 3 HOH HOH . F 5 HOH C 4 240 4 HOH HOH . F 5 HOH C 5 241 5 HOH HOH . F 5 HOH C 6 242 6 HOH HOH . F 5 HOH C 7 243 7 HOH HOH . F 5 HOH C 8 244 8 HOH HOH . F 5 HOH C 9 245 9 HOH HOH . F 5 HOH C 10 246 10 HOH HOH . F 5 HOH C 11 247 11 HOH HOH . F 5 HOH C 12 248 12 HOH HOH . F 5 HOH C 13 249 13 HOH HOH . F 5 HOH C 14 250 14 HOH HOH . F 5 HOH C 15 251 15 HOH HOH . F 5 HOH C 16 252 16 HOH HOH . F 5 HOH C 17 253 17 HOH HOH . F 5 HOH C 18 254 18 HOH HOH . F 5 HOH C 19 255 19 HOH HOH . F 5 HOH C 20 256 20 HOH HOH . F 5 HOH C 21 257 21 HOH HOH . F 5 HOH C 22 258 22 HOH HOH . F 5 HOH C 23 259 23 HOH HOH . F 5 HOH C 24 260 24 HOH HOH . F 5 HOH C 25 261 25 HOH HOH . F 5 HOH C 26 262 26 HOH HOH . F 5 HOH C 27 263 27 HOH HOH . F 5 HOH C 28 264 28 HOH HOH . F 5 HOH C 29 265 29 HOH HOH . F 5 HOH C 30 266 30 HOH HOH . F 5 HOH C 31 267 31 HOH HOH . F 5 HOH C 32 268 32 HOH HOH . F 5 HOH C 33 269 33 HOH HOH . F 5 HOH C 34 270 34 HOH HOH . F 5 HOH C 35 271 35 HOH HOH . F 5 HOH C 36 272 36 HOH HOH . F 5 HOH C 37 273 37 HOH HOH . F 5 HOH C 38 274 38 HOH HOH . F 5 HOH C 39 275 39 HOH HOH . F 5 HOH C 40 276 40 HOH HOH . F 5 HOH C 41 277 41 HOH HOH . F 5 HOH C 42 278 42 HOH HOH . F 5 HOH C 43 279 43 HOH HOH . F 5 HOH C 44 280 44 HOH HOH . F 5 HOH C 45 281 45 HOH HOH . F 5 HOH C 46 282 46 HOH HOH . F 5 HOH C 47 283 47 HOH HOH . F 5 HOH C 48 284 49 HOH HOH . F 5 HOH C 49 285 50 HOH HOH . F 5 HOH C 50 286 51 HOH HOH . F 5 HOH C 51 287 52 HOH HOH . F 5 HOH C 52 288 53 HOH HOH . F 5 HOH C 53 289 54 HOH HOH . F 5 HOH C 54 290 55 HOH HOH . F 5 HOH C 55 291 56 HOH HOH . F 5 HOH C 56 292 57 HOH HOH . F 5 HOH C 57 293 58 HOH HOH . F 5 HOH C 58 294 59 HOH HOH . F 5 HOH C 59 295 60 HOH HOH . F 5 HOH C 60 296 61 HOH HOH . F 5 HOH C 61 297 62 HOH HOH . F 5 HOH C 62 298 63 HOH HOH . F 5 HOH C 63 299 64 HOH HOH . F 5 HOH C 64 300 66 HOH HOH . F 5 HOH C 65 301 67 HOH HOH . F 5 HOH C 66 302 68 HOH HOH . F 5 HOH C 67 303 69 HOH HOH . F 5 HOH C 68 304 70 HOH HOH . F 5 HOH C 69 305 71 HOH HOH . F 5 HOH C 70 306 72 HOH HOH . F 5 HOH C 71 307 73 HOH HOH . F 5 HOH C 72 308 74 HOH HOH . F 5 HOH C 73 309 75 HOH HOH . F 5 HOH C 74 310 76 HOH HOH . F 5 HOH C 75 311 77 HOH HOH . F 5 HOH C 76 312 78 HOH HOH . F 5 HOH C 77 313 79 HOH HOH . F 5 HOH C 78 314 80 HOH HOH . F 5 HOH C 79 315 82 HOH HOH . F 5 HOH C 80 316 83 HOH HOH . F 5 HOH C 81 317 84 HOH HOH . F 5 HOH C 82 318 85 HOH HOH . F 5 HOH C 83 319 86 HOH HOH . F 5 HOH C 84 320 87 HOH HOH . F 5 HOH C 85 321 88 HOH HOH . F 5 HOH C 86 322 89 HOH HOH . F 5 HOH C 87 323 90 HOH HOH . F 5 HOH C 88 324 91 HOH HOH . F 5 HOH C 89 325 92 HOH HOH . F 5 HOH C 90 326 93 HOH HOH . F 5 HOH C 91 327 94 HOH HOH . F 5 HOH C 92 328 95 HOH HOH . F 5 HOH C 93 329 96 HOH HOH . F 5 HOH C 94 330 97 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 CIT . . . D 3 33.351 11.548 7.662 1 66.87 ? C1 CIT 235 C 1 HETATM 2 O O1 CIT . . . D 3 33.968 12.483 7.093 1 67.13 ? O1 CIT 235 C 1 HETATM 3 O O2 CIT . . . D 3 33.86 11.055 8.698 1 68.85 ? O2 CIT 235 C 1 HETATM 4 C C2 CIT . . . D 3 32.035 11.011 7.116 1 63.92 ? C2 CIT 235 C 1 HETATM 5 C C3 CIT . . . D 3 30.864 11.966 7.369 1 62.34 ? C3 CIT 235 C 1 HETATM 6 O O7 CIT . . . D 3 30.511 11.972 8.777 1 60.01 ? O7 CIT 235 C 1 HETATM 7 C C4 CIT . . . D 3 29.621 11.489 6.622 1 61.64 ? C4 CIT 235 C 1 HETATM 8 C C5 CIT . . . D 3 28.41 12.329 6.989 1 59.12 ? C5 CIT 235 C 1 HETATM 9 O O3 CIT . . . D 3 28.211 12.749 8.152 1 59.2 ? O3 CIT 235 C 1 HETATM 10 O O4 CIT . . . D 3 27.578 12.628 6.109 1 58.06 ? O4 CIT 235 C 1 HETATM 11 C C6 CIT . . . D 3 31.227 13.345 6.804 1 63.71 ? C6 CIT 235 C 1 HETATM 12 O O5 CIT . . . D 3 31.199 13.527 5.565 1 64.32 ? O5 CIT 235 C 1 HETATM 13 O O6 CIT . . . D 3 31.568 14.309 7.532 1 63.04 ? O6 CIT 235 C 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 221 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 13 #