data_3U3Y # _model_server_result.job_id f4gifBSK70MXMVhe14md2w _model_server_result.datetime_utc '2024-11-21 23:06:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3u3y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":5}' # _entry.id 3U3Y # _exptl.entry_id 3U3Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 40.078 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.11 _cell.angle_gamma 90 _cell.entry_id 3U3Y _cell.length_a 65.066 _cell.length_b 57.861 _cell.length_c 68.227 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3U3Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 18 B ASP 18 1_555 G CA CA . D CA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.569 ? metalc ? metalc2 H O HOH . B HOH 331 1_555 G CA CA . D CA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.586 ? metalc ? metalc3 H O HOH . B HOH 355 1_555 G CA CA . D CA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.605 ? metalc ? metalc4 H O HOH . B HOH 386 1_555 G CA CA . D CA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.743 ? metalc ? metalc5 B OD1 ASP 18 A ASP 18 1_555 F CA CA . C CA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.529 ? metalc ? metalc6 I O HOH . A HOH 344 1_555 F CA CA . C CA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.629 ? metalc ? metalc7 I O HOH . A HOH 349 1_555 F CA CA . C CA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.717 ? metalc ? metalc8 C O3' DC 3 C DC 3 1_555 F CA CA . C CA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.723 ? metalc ? metalc9 C OP1 DG 4 C DG 4 1_555 F CA CA . C CA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.521 ? metalc ? metalc10 D O3' DC 3 D DC 3 1_555 G CA CA . D CA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? metalc ? metalc11 D OP1 DG 4 D DG 4 1_555 G CA CA . D CA 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.532 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3U3Y _atom_sites.fract_transf_matrix[1][1] 0.015369 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005026 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017283 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015421 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 BU1 A 1 315 1 BU1 BU1 . F 4 CA C 1 5 2 CA CA . G 4 CA D 1 5 1 CA CA . H 5 HOH B 1 315 6 HOH HOH . H 5 HOH B 2 316 8 HOH HOH . H 5 HOH B 3 317 11 HOH HOH . H 5 HOH B 4 318 17 HOH HOH . H 5 HOH B 5 319 18 HOH HOH . H 5 HOH B 6 320 20 HOH HOH . H 5 HOH B 7 321 21 HOH HOH . H 5 HOH B 8 322 22 HOH HOH . H 5 HOH B 9 323 25 HOH HOH . H 5 HOH B 10 324 28 HOH HOH . H 5 HOH B 11 325 31 HOH HOH . H 5 HOH B 12 326 32 HOH HOH . H 5 HOH B 13 327 33 HOH HOH . H 5 HOH B 14 328 38 HOH HOH . H 5 HOH B 15 329 39 HOH HOH . H 5 HOH B 16 330 41 HOH HOH . H 5 HOH B 17 331 42 HOH HOH . H 5 HOH B 18 332 44 HOH HOH . H 5 HOH B 19 333 48 HOH HOH . H 5 HOH B 20 334 49 HOH HOH . H 5 HOH B 21 335 52 HOH HOH . H 5 HOH B 22 336 56 HOH HOH . H 5 HOH B 23 337 57 HOH HOH . H 5 HOH B 24 338 58 HOH HOH . H 5 HOH B 25 339 60 HOH HOH . H 5 HOH B 26 340 65 HOH HOH . H 5 HOH B 27 341 66 HOH HOH . H 5 HOH B 28 342 68 HOH HOH . H 5 HOH B 29 343 74 HOH HOH . H 5 HOH B 30 344 76 HOH HOH . H 5 HOH B 31 345 77 HOH HOH . H 5 HOH B 32 346 78 HOH HOH . H 5 HOH B 33 347 81 HOH HOH . H 5 HOH B 34 348 88 HOH HOH . H 5 HOH B 35 349 89 HOH HOH . H 5 HOH B 36 350 90 HOH HOH . H 5 HOH B 37 351 99 HOH HOH . H 5 HOH B 38 352 101 HOH HOH . H 5 HOH B 39 353 107 HOH HOH . H 5 HOH B 40 354 108 HOH HOH . H 5 HOH B 41 355 113 HOH HOH . H 5 HOH B 42 356 114 HOH HOH . H 5 HOH B 43 357 115 HOH HOH . H 5 HOH B 44 358 120 HOH HOH . H 5 HOH B 45 359 123 HOH HOH . H 5 HOH B 46 360 124 HOH HOH . H 5 HOH B 47 361 126 HOH HOH . H 5 HOH B 48 362 130 HOH HOH . H 5 HOH B 49 363 132 HOH HOH . H 5 HOH B 50 364 133 HOH HOH . H 5 HOH B 51 365 134 HOH HOH . H 5 HOH B 52 366 135 HOH HOH . H 5 HOH B 53 367 140 HOH HOH . H 5 HOH B 54 368 143 HOH HOH . H 5 HOH B 55 369 145 HOH HOH . H 5 HOH B 56 370 148 HOH HOH . H 5 HOH B 57 371 152 HOH HOH . H 5 HOH B 58 372 154 HOH HOH . H 5 HOH B 59 373 155 HOH HOH . H 5 HOH B 60 374 157 HOH HOH . H 5 HOH B 61 375 158 HOH HOH . H 5 HOH B 62 376 159 HOH HOH . H 5 HOH B 63 377 161 HOH HOH . H 5 HOH B 64 378 163 HOH HOH . H 5 HOH B 65 379 164 HOH HOH . H 5 HOH B 66 380 172 HOH HOH . H 5 HOH B 67 381 173 HOH HOH . H 5 HOH B 68 382 182 HOH HOH . H 5 HOH B 69 383 183 HOH HOH . H 5 HOH B 70 384 185 HOH HOH . H 5 HOH B 71 385 186 HOH HOH . H 5 HOH B 72 386 188 HOH HOH . H 5 HOH B 73 387 191 HOH HOH . H 5 HOH B 74 388 194 HOH HOH . H 5 HOH B 75 389 195 HOH HOH . H 5 HOH B 76 390 196 HOH HOH . I 5 HOH A 1 316 1 HOH HOH . I 5 HOH A 2 317 3 HOH HOH . I 5 HOH A 3 318 4 HOH HOH . I 5 HOH A 4 319 5 HOH HOH . I 5 HOH A 5 320 7 HOH HOH . I 5 HOH A 6 321 9 HOH HOH . I 5 HOH A 7 322 10 HOH HOH . I 5 HOH A 8 323 12 HOH HOH . I 5 HOH A 9 324 13 HOH HOH . I 5 HOH A 10 325 14 HOH HOH . I 5 HOH A 11 326 15 HOH HOH . I 5 HOH A 12 327 16 HOH HOH . I 5 HOH A 13 328 19 HOH HOH . I 5 HOH A 14 329 23 HOH HOH . I 5 HOH A 15 330 24 HOH HOH . I 5 HOH A 16 331 26 HOH HOH . I 5 HOH A 17 332 27 HOH HOH . I 5 HOH A 18 333 30 HOH HOH . I 5 HOH A 19 334 35 HOH HOH . I 5 HOH A 20 335 36 HOH HOH . I 5 HOH A 21 336 40 HOH HOH . I 5 HOH A 22 337 43 HOH HOH . I 5 HOH A 23 338 45 HOH HOH . I 5 HOH A 24 339 46 HOH HOH . I 5 HOH A 25 340 47 HOH HOH . I 5 HOH A 26 341 50 HOH HOH . I 5 HOH A 27 342 51 HOH HOH . I 5 HOH A 28 343 59 HOH HOH . I 5 HOH A 29 344 61 HOH HOH . I 5 HOH A 30 345 62 HOH HOH . I 5 HOH A 31 346 64 HOH HOH . I 5 HOH A 32 347 67 HOH HOH . I 5 HOH A 33 348 69 HOH HOH . I 5 HOH A 34 349 70 HOH HOH . I 5 HOH A 35 350 75 HOH HOH . I 5 HOH A 36 351 79 HOH HOH . I 5 HOH A 37 352 80 HOH HOH . I 5 HOH A 38 353 82 HOH HOH . I 5 HOH A 39 354 83 HOH HOH . I 5 HOH A 40 355 84 HOH HOH . I 5 HOH A 41 356 85 HOH HOH . I 5 HOH A 42 357 86 HOH HOH . I 5 HOH A 43 358 87 HOH HOH . I 5 HOH A 44 359 91 HOH HOH . I 5 HOH A 45 360 92 HOH HOH . I 5 HOH A 46 361 93 HOH HOH . I 5 HOH A 47 362 95 HOH HOH . I 5 HOH A 48 363 96 HOH HOH . I 5 HOH A 49 364 97 HOH HOH . I 5 HOH A 50 365 98 HOH HOH . I 5 HOH A 51 366 100 HOH HOH . I 5 HOH A 52 367 104 HOH HOH . I 5 HOH A 53 368 105 HOH HOH . I 5 HOH A 54 369 106 HOH HOH . I 5 HOH A 55 370 109 HOH HOH . I 5 HOH A 56 371 110 HOH HOH . I 5 HOH A 57 372 112 HOH HOH . I 5 HOH A 58 373 116 HOH HOH . I 5 HOH A 59 374 118 HOH HOH . I 5 HOH A 60 375 119 HOH HOH . I 5 HOH A 61 376 121 HOH HOH . I 5 HOH A 62 377 122 HOH HOH . I 5 HOH A 63 378 125 HOH HOH . I 5 HOH A 64 379 128 HOH HOH . I 5 HOH A 65 380 129 HOH HOH . I 5 HOH A 66 381 131 HOH HOH . I 5 HOH A 67 382 136 HOH HOH . I 5 HOH A 68 383 137 HOH HOH . I 5 HOH A 69 384 138 HOH HOH . I 5 HOH A 70 385 146 HOH HOH . I 5 HOH A 71 386 149 HOH HOH . I 5 HOH A 72 387 153 HOH HOH . I 5 HOH A 73 388 162 HOH HOH . I 5 HOH A 74 389 165 HOH HOH . I 5 HOH A 75 390 169 HOH HOH . I 5 HOH A 76 391 171 HOH HOH . I 5 HOH A 77 392 174 HOH HOH . I 5 HOH A 78 393 175 HOH HOH . I 5 HOH A 79 394 176 HOH HOH . I 5 HOH A 80 395 178 HOH HOH . I 5 HOH A 81 396 179 HOH HOH . I 5 HOH A 82 397 180 HOH HOH . I 5 HOH A 83 398 181 HOH HOH . I 5 HOH A 84 399 187 HOH HOH . I 5 HOH A 85 400 189 HOH HOH . I 5 HOH A 86 401 190 HOH HOH . I 5 HOH A 87 402 193 HOH HOH . I 5 HOH A 88 403 197 HOH HOH . J 5 HOH C 1 34 34 HOH HOH . J 5 HOH C 2 37 37 HOH HOH . J 5 HOH C 3 53 53 HOH HOH . J 5 HOH C 4 94 94 HOH HOH . J 5 HOH C 5 103 103 HOH HOH . J 5 HOH C 6 127 127 HOH HOH . J 5 HOH C 7 170 170 HOH HOH . K 5 HOH D 1 29 29 HOH HOH . K 5 HOH D 2 54 54 HOH HOH . K 5 HOH D 3 55 55 HOH HOH . K 5 HOH D 4 63 63 HOH HOH . K 5 HOH D 5 71 71 HOH HOH . K 5 HOH D 6 73 73 HOH HOH . K 5 HOH D 7 111 111 HOH HOH . K 5 HOH D 8 139 139 HOH HOH . K 5 HOH D 9 151 151 HOH HOH . K 5 HOH D 10 167 167 HOH HOH . K 5 HOH D 11 168 168 HOH HOH . K 5 HOH D 12 177 177 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 4 _atom_site.Cartn_x -9.901 _atom_site.Cartn_y -7.844 _atom_site.Cartn_z 18.305 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 47.49 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 5 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 79 _model_server_stats.parse_time_ms 127 _model_server_stats.create_model_time_ms 58 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #