data_3U3Z # _model_server_result.job_id 1Of4VAnymJ2adjMEuJ-44A _model_server_result.datetime_utc '2024-10-23 05:34:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3u3z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1}' # _entry.id 3U3Z # _exptl.entry_id 3U3Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.07 _cell.angle_gamma 90 _cell.entry_id 3U3Z _cell.length_a 37.689 _cell.length_b 46.537 _cell.length_c 55.778 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3U3Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C SEP 1 B SEP 1 1_555 B N GLN 2 B GLN 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 B C GLU 3 B GLU 3 1_555 B N PTR 4 B PTR 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 3U3Z _atom_sites.fract_transf_matrix[1][1] 0.026533 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003291 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021488 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018066 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GOL A 1 1 1 GOL GOL . D 3 GOL A 1 2 2 GOL GOL . E 4 HOH A 1 3 3 HOH HOH . E 4 HOH A 2 4 4 HOH HOH . E 4 HOH A 3 5 5 HOH HOH . E 4 HOH A 4 6 6 HOH HOH . E 4 HOH A 5 7 7 HOH HOH . E 4 HOH A 6 8 8 HOH HOH . E 4 HOH A 7 9 9 HOH HOH . E 4 HOH A 8 10 10 HOH HOH . E 4 HOH A 9 11 11 HOH HOH . E 4 HOH A 10 12 12 HOH HOH . E 4 HOH A 11 13 13 HOH HOH . E 4 HOH A 12 14 14 HOH HOH . E 4 HOH A 13 15 15 HOH HOH . E 4 HOH A 14 16 16 HOH HOH . E 4 HOH A 15 17 17 HOH HOH . E 4 HOH A 16 18 18 HOH HOH . E 4 HOH A 17 20 20 HOH HOH . E 4 HOH A 18 21 21 HOH HOH . E 4 HOH A 19 22 22 HOH HOH . E 4 HOH A 20 23 23 HOH HOH . E 4 HOH A 21 24 24 HOH HOH . E 4 HOH A 22 25 25 HOH HOH . E 4 HOH A 23 26 26 HOH HOH . E 4 HOH A 24 27 27 HOH HOH . E 4 HOH A 25 28 28 HOH HOH . E 4 HOH A 26 29 29 HOH HOH . E 4 HOH A 27 30 30 HOH HOH . E 4 HOH A 28 31 31 HOH HOH . E 4 HOH A 29 32 32 HOH HOH . E 4 HOH A 30 33 33 HOH HOH . E 4 HOH A 31 34 34 HOH HOH . E 4 HOH A 32 35 35 HOH HOH . E 4 HOH A 33 36 36 HOH HOH . E 4 HOH A 34 37 37 HOH HOH . E 4 HOH A 35 38 38 HOH HOH . E 4 HOH A 36 39 39 HOH HOH . E 4 HOH A 37 40 40 HOH HOH . E 4 HOH A 38 41 41 HOH HOH . E 4 HOH A 39 42 42 HOH HOH . E 4 HOH A 40 43 43 HOH HOH . E 4 HOH A 41 44 44 HOH HOH . E 4 HOH A 42 45 45 HOH HOH . E 4 HOH A 43 46 46 HOH HOH . E 4 HOH A 44 47 47 HOH HOH . E 4 HOH A 45 48 48 HOH HOH . E 4 HOH A 46 49 49 HOH HOH . E 4 HOH A 47 50 50 HOH HOH . E 4 HOH A 48 51 51 HOH HOH . E 4 HOH A 49 52 52 HOH HOH . E 4 HOH A 50 53 53 HOH HOH . E 4 HOH A 51 55 55 HOH HOH . E 4 HOH A 52 56 56 HOH HOH . E 4 HOH A 53 57 57 HOH HOH . E 4 HOH A 54 58 58 HOH HOH . E 4 HOH A 55 59 59 HOH HOH . E 4 HOH A 56 60 60 HOH HOH . E 4 HOH A 57 61 61 HOH HOH . E 4 HOH A 58 63 63 HOH HOH . E 4 HOH A 59 64 64 HOH HOH . E 4 HOH A 60 65 65 HOH HOH . E 4 HOH A 61 66 66 HOH HOH . E 4 HOH A 62 67 67 HOH HOH . E 4 HOH A 63 68 68 HOH HOH . E 4 HOH A 64 69 69 HOH HOH . E 4 HOH A 65 70 70 HOH HOH . E 4 HOH A 66 71 71 HOH HOH . E 4 HOH A 67 72 72 HOH HOH . E 4 HOH A 68 73 73 HOH HOH . E 4 HOH A 69 74 74 HOH HOH . E 4 HOH A 70 75 75 HOH HOH . E 4 HOH A 71 76 76 HOH HOH . E 4 HOH A 72 77 77 HOH HOH . E 4 HOH A 73 78 78 HOH HOH . E 4 HOH A 74 79 79 HOH HOH . E 4 HOH A 75 80 80 HOH HOH . E 4 HOH A 76 81 81 HOH HOH . E 4 HOH A 77 82 82 HOH HOH . E 4 HOH A 78 83 83 HOH HOH . E 4 HOH A 79 84 84 HOH HOH . E 4 HOH A 80 85 85 HOH HOH . E 4 HOH A 81 86 86 HOH HOH . E 4 HOH A 82 87 87 HOH HOH . E 4 HOH A 83 88 88 HOH HOH . E 4 HOH A 84 89 89 HOH HOH . E 4 HOH A 85 90 90 HOH HOH . E 4 HOH A 86 91 91 HOH HOH . E 4 HOH A 87 92 92 HOH HOH . E 4 HOH A 88 93 93 HOH HOH . E 4 HOH A 89 94 94 HOH HOH . E 4 HOH A 90 95 95 HOH HOH . E 4 HOH A 91 96 96 HOH HOH . E 4 HOH A 92 97 97 HOH HOH . E 4 HOH A 93 98 98 HOH HOH . E 4 HOH A 94 99 99 HOH HOH . E 4 HOH A 95 100 100 HOH HOH . E 4 HOH A 96 101 101 HOH HOH . E 4 HOH A 97 102 102 HOH HOH . E 4 HOH A 98 103 103 HOH HOH . E 4 HOH A 99 104 104 HOH HOH . E 4 HOH A 100 105 105 HOH HOH . E 4 HOH A 101 106 106 HOH HOH . E 4 HOH A 102 107 107 HOH HOH . E 4 HOH A 103 108 108 HOH HOH . E 4 HOH A 104 109 109 HOH HOH . E 4 HOH A 105 110 110 HOH HOH . E 4 HOH A 106 111 111 HOH HOH . E 4 HOH A 107 112 112 HOH HOH . E 4 HOH A 108 113 113 HOH HOH . E 4 HOH A 109 115 115 HOH HOH . E 4 HOH A 110 116 116 HOH HOH . E 4 HOH A 111 117 117 HOH HOH . E 4 HOH A 112 118 118 HOH HOH . E 4 HOH A 113 119 119 HOH HOH . E 4 HOH A 114 120 120 HOH HOH . E 4 HOH A 115 122 122 HOH HOH . E 4 HOH A 116 123 123 HOH HOH . E 4 HOH A 117 124 124 HOH HOH . E 4 HOH A 118 125 125 HOH HOH . E 4 HOH A 119 126 126 HOH HOH . E 4 HOH A 120 127 127 HOH HOH . E 4 HOH A 121 128 128 HOH HOH . E 4 HOH A 122 129 129 HOH HOH . E 4 HOH A 123 130 130 HOH HOH . E 4 HOH A 124 131 131 HOH HOH . E 4 HOH A 125 132 132 HOH HOH . E 4 HOH A 126 134 134 HOH HOH . E 4 HOH A 127 136 136 HOH HOH . E 4 HOH A 128 137 137 HOH HOH . E 4 HOH A 129 138 138 HOH HOH . E 4 HOH A 130 139 139 HOH HOH . E 4 HOH A 131 140 140 HOH HOH . E 4 HOH A 132 142 142 HOH HOH . E 4 HOH A 133 143 143 HOH HOH . E 4 HOH A 134 146 146 HOH HOH . E 4 HOH A 135 148 148 HOH HOH . E 4 HOH A 136 149 149 HOH HOH . E 4 HOH A 137 150 150 HOH HOH . E 4 HOH A 138 151 151 HOH HOH . E 4 HOH A 139 152 152 HOH HOH . E 4 HOH A 140 153 153 HOH HOH . E 4 HOH A 141 155 155 HOH HOH . E 4 HOH A 142 156 156 HOH HOH . E 4 HOH A 143 157 157 HOH HOH . E 4 HOH A 144 158 158 HOH HOH . E 4 HOH A 145 159 159 HOH HOH . E 4 HOH A 146 160 160 HOH HOH . E 4 HOH A 147 161 161 HOH HOH . E 4 HOH A 148 162 162 HOH HOH . E 4 HOH A 149 163 163 HOH HOH . E 4 HOH A 150 164 164 HOH HOH . E 4 HOH A 151 165 165 HOH HOH . E 4 HOH A 152 166 166 HOH HOH . E 4 HOH A 153 167 167 HOH HOH . E 4 HOH A 154 169 169 HOH HOH . E 4 HOH A 155 170 170 HOH HOH . E 4 HOH A 156 171 171 HOH HOH . E 4 HOH A 157 172 172 HOH HOH . E 4 HOH A 158 174 174 HOH HOH . E 4 HOH A 159 175 175 HOH HOH . E 4 HOH A 160 176 176 HOH HOH . E 4 HOH A 161 177 177 HOH HOH . E 4 HOH A 162 178 178 HOH HOH . E 4 HOH A 163 179 179 HOH HOH . E 4 HOH A 164 180 180 HOH HOH . E 4 HOH A 165 182 182 HOH HOH . E 4 HOH A 166 183 183 HOH HOH . E 4 HOH A 167 185 185 HOH HOH . E 4 HOH A 168 186 186 HOH HOH . E 4 HOH A 169 187 187 HOH HOH . E 4 HOH A 170 189 189 HOH HOH . E 4 HOH A 171 190 190 HOH HOH . E 4 HOH A 172 191 191 HOH HOH . E 4 HOH A 173 192 192 HOH HOH . E 4 HOH A 174 193 193 HOH HOH . E 4 HOH A 175 194 194 HOH HOH . E 4 HOH A 176 195 195 HOH HOH . E 4 HOH A 177 197 197 HOH HOH . E 4 HOH A 178 200 200 HOH HOH . E 4 HOH A 179 201 201 HOH HOH . E 4 HOH A 180 202 202 HOH HOH . E 4 HOH A 181 203 203 HOH HOH . E 4 HOH A 182 204 204 HOH HOH . E 4 HOH A 183 205 205 HOH HOH . E 4 HOH A 184 206 206 HOH HOH . E 4 HOH A 185 207 207 HOH HOH . E 4 HOH A 186 208 208 HOH HOH . E 4 HOH A 187 209 209 HOH HOH . E 4 HOH A 188 212 212 HOH HOH . E 4 HOH A 189 214 214 HOH HOH . E 4 HOH A 190 215 215 HOH HOH . E 4 HOH A 191 216 216 HOH HOH . E 4 HOH A 192 218 218 HOH HOH . E 4 HOH A 193 219 219 HOH HOH . E 4 HOH A 194 220 220 HOH HOH . E 4 HOH A 195 221 221 HOH HOH . E 4 HOH A 196 222 222 HOH HOH . E 4 HOH A 197 223 223 HOH HOH . E 4 HOH A 198 225 225 HOH HOH . E 4 HOH A 199 226 226 HOH HOH . E 4 HOH A 200 228 228 HOH HOH . E 4 HOH A 201 230 230 HOH HOH . E 4 HOH A 202 232 232 HOH HOH . E 4 HOH A 203 233 233 HOH HOH . E 4 HOH A 204 234 234 HOH HOH . E 4 HOH A 205 237 237 HOH HOH . E 4 HOH A 206 238 238 HOH HOH . E 4 HOH A 207 241 241 HOH HOH . E 4 HOH A 208 243 243 HOH HOH . E 4 HOH A 209 244 244 HOH HOH . E 4 HOH A 210 245 245 HOH HOH . E 4 HOH A 211 246 246 HOH HOH . E 4 HOH A 212 248 248 HOH HOH . E 4 HOH A 213 250 250 HOH HOH . E 4 HOH A 214 252 252 HOH HOH . E 4 HOH A 215 254 254 HOH HOH . E 4 HOH A 216 258 258 HOH HOH . E 4 HOH A 217 259 259 HOH HOH . E 4 HOH A 218 262 262 HOH HOH . E 4 HOH A 219 265 265 HOH HOH . E 4 HOH A 220 266 266 HOH HOH . E 4 HOH A 221 268 268 HOH HOH . E 4 HOH A 222 270 270 HOH HOH . E 4 HOH A 223 271 271 HOH HOH . E 4 HOH A 224 272 272 HOH HOH . E 4 HOH A 225 279 279 HOH HOH . E 4 HOH A 226 280 280 HOH HOH . E 4 HOH A 227 281 281 HOH HOH . E 4 HOH A 228 283 283 HOH HOH . E 4 HOH A 229 285 285 HOH HOH . E 4 HOH A 230 290 290 HOH HOH . E 4 HOH A 231 295 295 HOH HOH . E 4 HOH A 232 297 297 HOH HOH . E 4 HOH A 233 301 301 HOH HOH . E 4 HOH A 234 302 302 HOH HOH . E 4 HOH A 235 304 304 HOH HOH . E 4 HOH A 236 305 305 HOH HOH . E 4 HOH A 237 306 306 HOH HOH . E 4 HOH A 238 307 307 HOH HOH . E 4 HOH A 239 308 308 HOH HOH . E 4 HOH A 240 309 309 HOH HOH . E 4 HOH A 241 310 310 HOH HOH . E 4 HOH A 242 311 311 HOH HOH . E 4 HOH A 243 312 312 HOH HOH . E 4 HOH A 244 313 313 HOH HOH . E 4 HOH A 245 314 314 HOH HOH . E 4 HOH A 246 315 315 HOH HOH . E 4 HOH A 247 316 316 HOH HOH . E 4 HOH A 248 317 317 HOH HOH . E 4 HOH A 249 318 318 HOH HOH . E 4 HOH A 250 319 319 HOH HOH . E 4 HOH A 251 320 320 HOH HOH . E 4 HOH A 252 321 321 HOH HOH . E 4 HOH A 253 322 322 HOH HOH . E 4 HOH A 254 323 323 HOH HOH . E 4 HOH A 255 324 324 HOH HOH . E 4 HOH A 256 325 325 HOH HOH . E 4 HOH A 257 836 836 HOH HOH . E 4 HOH A 258 837 837 HOH HOH . F 4 HOH B 1 19 19 HOH HOH . F 4 HOH B 2 54 54 HOH HOH . F 4 HOH B 3 62 62 HOH HOH . F 4 HOH B 4 114 114 HOH HOH . F 4 HOH B 5 121 121 HOH HOH . F 4 HOH B 6 133 133 HOH HOH . F 4 HOH B 7 135 135 HOH HOH . F 4 HOH B 8 141 141 HOH HOH . F 4 HOH B 9 144 144 HOH HOH . F 4 HOH B 10 145 145 HOH HOH . F 4 HOH B 11 147 147 HOH HOH . F 4 HOH B 12 168 168 HOH HOH . F 4 HOH B 13 184 184 HOH HOH . F 4 HOH B 14 198 198 HOH HOH . F 4 HOH B 15 213 213 HOH HOH . F 4 HOH B 16 227 227 HOH HOH . F 4 HOH B 17 240 240 HOH HOH . F 4 HOH B 18 253 253 HOH HOH . F 4 HOH B 19 255 255 HOH HOH . F 4 HOH B 20 256 256 HOH HOH . F 4 HOH B 21 287 287 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 -9.438 -34.108 -21.522 1 30.41 ? C1 GOL 1 A 1 HETATM 2 O O1 GOL . . . C 3 -9.549 -34.747 -22.774 1 35.14 ? O1 GOL 1 A 1 HETATM 3 C C2 GOL . . . C 3 -8.345 -33.044 -21.587 1 28.6 ? C2 GOL 1 A 1 HETATM 4 O O2 GOL . . . C 3 -7.578 -33.234 -22.749 1 32.02 ? O2 GOL 1 A 1 HETATM 5 C C3 GOL . . . C 3 -7.454 -33.117 -20.355 1 22.36 ? C3 GOL 1 A 1 HETATM 6 O O3 GOL . A . C 3 -6.225 -32.477 -20.603 0.64 11.88 ? O3 GOL 1 A 1 HETATM 7 O O3 GOL . B . C 3 -7.105 -34.458 -20.079 0.36 23.86 ? O3 GOL 1 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 234 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 7 #