data_3U4X # _model_server_result.job_id f-rP302QnJRYA1kELL-eRQ _model_server_result.datetime_utc '2024-12-05 03:44:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3u4x # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":238}' # _entry.id 3U4X # _exptl.entry_id 3U4X _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 54.938 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MANGANESE (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3U4X _cell.length_a 65.94 _cell.length_b 66.78 _cell.length_c 107.7 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3U4X _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 0 -66.78 0 3 'crystal symmetry operation' 3_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 4_545 x,-y-1,-z 1 0 0 0 -1 0 0 0 -1 0 -66.78 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE2 GLU 8 A GLU 8 1_555 C MN MN . A MN 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc2 A OD1 ASP 10 A ASP 10 1_555 B CA CA . A CA 237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.491 ? metalc ? metalc3 A OD2 ASP 10 A ASP 10 1_555 B CA CA . A CA 237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? metalc ? metalc4 A OD1 ASP 10 A ASP 10 1_555 C MN MN . A MN 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc5 A O TYR 12 A TYR 12 1_555 B CA CA . A CA 237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc6 A OD1 ASN 14 A ASN 14 1_555 B CA CA . A CA 237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.424 ? metalc ? metalc7 A OD2 ASP 19 A ASP 19 1_555 B CA CA . A CA 237 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.246 ? metalc ? metalc8 A OD1 ASP 19 A ASP 19 1_555 C MN MN . A MN 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc9 A NE2 HIS 24 A HIS 24 1_555 C MN MN . A MN 238 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc10 B CA CA . A CA 237 1_555 E O HOH . A HOH 241 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc11 B CA CA . A CA 237 1_555 E O HOH . A HOH 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc12 C MN MN . A MN 238 1_555 E O HOH . A HOH 249 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? # _chem_comp.formula 'Mn 2' _chem_comp.formula_weight 54.938 _chem_comp.id MN _chem_comp.mon_nstd_flag . _chem_comp.name 'MANGANESE (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3U4X _atom_sites.fract_transf_matrix[1][1] 0.015165 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014975 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009285 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CA A 1 237 237 CA CA . C 3 MN A 1 238 238 MN MN . D 4 XMM A 1 239 1 XMM XMM . E 5 HOH A 1 240 1 HOH HOH . E 5 HOH A 2 241 2 HOH HOH . E 5 HOH A 3 242 3 HOH HOH . E 5 HOH A 4 243 4 HOH HOH . E 5 HOH A 5 244 5 HOH HOH . E 5 HOH A 6 245 6 HOH HOH . E 5 HOH A 7 246 7 HOH HOH . E 5 HOH A 8 247 8 HOH HOH . E 5 HOH A 9 248 9 HOH HOH . E 5 HOH A 10 249 10 HOH HOH . E 5 HOH A 11 250 11 HOH HOH . E 5 HOH A 12 251 12 HOH HOH . E 5 HOH A 13 252 13 HOH HOH . E 5 HOH A 14 253 14 HOH HOH . E 5 HOH A 15 254 15 HOH HOH . E 5 HOH A 16 255 16 HOH HOH . E 5 HOH A 17 256 17 HOH HOH . E 5 HOH A 18 257 18 HOH HOH . E 5 HOH A 19 258 19 HOH HOH . E 5 HOH A 20 259 20 HOH HOH . E 5 HOH A 21 260 21 HOH HOH . E 5 HOH A 22 261 22 HOH HOH . E 5 HOH A 23 262 23 HOH HOH . E 5 HOH A 24 263 24 HOH HOH . E 5 HOH A 25 264 25 HOH HOH . E 5 HOH A 26 265 26 HOH HOH . E 5 HOH A 27 266 27 HOH HOH . E 5 HOH A 28 267 28 HOH HOH . E 5 HOH A 29 268 29 HOH HOH . E 5 HOH A 30 269 30 HOH HOH . E 5 HOH A 31 270 31 HOH HOH . E 5 HOH A 32 271 32 HOH HOH . E 5 HOH A 33 272 33 HOH HOH . E 5 HOH A 34 273 34 HOH HOH . E 5 HOH A 35 274 35 HOH HOH . E 5 HOH A 36 275 36 HOH HOH . E 5 HOH A 37 276 37 HOH HOH . E 5 HOH A 38 277 38 HOH HOH . E 5 HOH A 39 278 39 HOH HOH . E 5 HOH A 40 279 40 HOH HOH . E 5 HOH A 41 280 41 HOH HOH . E 5 HOH A 42 281 42 HOH HOH . E 5 HOH A 43 282 43 HOH HOH . E 5 HOH A 44 283 44 HOH HOH . E 5 HOH A 45 284 45 HOH HOH . E 5 HOH A 46 285 46 HOH HOH . E 5 HOH A 47 286 47 HOH HOH . E 5 HOH A 48 287 48 HOH HOH . E 5 HOH A 49 288 49 HOH HOH . E 5 HOH A 50 289 50 HOH HOH . E 5 HOH A 51 290 51 HOH HOH . E 5 HOH A 52 291 52 HOH HOH . E 5 HOH A 53 292 53 HOH HOH . E 5 HOH A 54 293 54 HOH HOH . E 5 HOH A 55 294 55 HOH HOH . E 5 HOH A 56 295 56 HOH HOH . E 5 HOH A 57 296 57 HOH HOH . E 5 HOH A 58 297 58 HOH HOH . E 5 HOH A 59 298 59 HOH HOH . E 5 HOH A 60 299 60 HOH HOH . E 5 HOH A 61 300 61 HOH HOH . E 5 HOH A 62 301 62 HOH HOH . E 5 HOH A 63 302 63 HOH HOH . E 5 HOH A 64 303 64 HOH HOH . E 5 HOH A 65 304 65 HOH HOH . E 5 HOH A 66 305 66 HOH HOH . E 5 HOH A 67 306 67 HOH HOH . E 5 HOH A 68 307 68 HOH HOH . E 5 HOH A 69 308 69 HOH HOH . E 5 HOH A 70 309 70 HOH HOH . E 5 HOH A 71 310 71 HOH HOH . E 5 HOH A 72 311 72 HOH HOH . E 5 HOH A 73 312 73 HOH HOH . E 5 HOH A 74 313 74 HOH HOH . E 5 HOH A 75 314 75 HOH HOH . E 5 HOH A 76 315 76 HOH HOH . E 5 HOH A 77 316 77 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MN _atom_site.label_atom_id MN _atom_site.label_comp_id MN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 3 _atom_site.Cartn_x -14.774 _atom_site.Cartn_y -17.214 _atom_site.Cartn_z 25.313 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 12.07 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MN _atom_site.auth_comp_id MN _atom_site.auth_seq_id 238 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 432 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 1 #