data_3U57 # _model_server_result.job_id eraBEGul9whRTpYsZwuywA _model_server_result.datetime_utc '2024-11-18 14:26:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3u57 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1000}' # _entry.id 3U57 # _exptl.entry_id 3U57 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 514.567 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2beta,7beta,16S,17R,19E,21beta)-21-(beta-D-glucopyranosyloxy)-2,7-dihydro-7,17-cyclosarpagan-17-yl acetate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3U57 _cell.length_a 104.885 _cell.length_b 129.552 _cell.length_c 216.918 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3U57 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 104.885 129.552 0 3 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 104.885 0 0 4 'crystal symmetry operation' 4_565 x,-y+1,-z 1 0 0 0 -1 0 0 0 -1 0 129.552 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C27 H34 N2 O8' _chem_comp.formula_weight 514.567 _chem_comp.id DH8 _chem_comp.mon_nstd_flag . _chem_comp.name '(2beta,7beta,16S,17R,19E,21beta)-21-(beta-D-glucopyranosyloxy)-2,7-dihydro-7,17-cyclosarpagan-17-yl acetate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 DH8 sing 83 n n C1 C2 DH8 sing 84 n n C1 O5 DH8 sing 85 n n O1 CBG DH8 sing 86 n n C2 O2 DH8 sing 87 n n C2 C3 DH8 sing 88 n n C3 O3 DH8 sing 89 n n C3 C4 DH8 sing 90 n n C4 O4 DH8 sing 91 n n C4 C5 DH8 sing 92 n n C5 O5 DH8 sing 93 n n C5 C6 DH8 sing 94 n n C6 O6 DH8 sing 95 n n CAA CAH DH8 sing 96 n n CAB CAT DH8 sing 97 n n OAC CAT DH8 doub 98 n n CAH CAU DH8 doub 99 e n CAI CAJ DH8 doub 100 n y CAI CAK DH8 sing 101 n y CAJ CAL DH8 sing 102 n y CAK CAW DH8 doub 103 n y CAL CAX DH8 doub 104 n y CAN CBC DH8 sing 105 n n CAN CBD DH8 sing 106 n n CAO CBF DH8 sing 107 n n CAO CBK DH8 sing 108 n n NAP CAV DH8 sing 109 n n NAP CAW DH8 sing 110 n n OAQ CAT DH8 sing 111 n n OAQ CBH DH8 sing 112 n n CAU CBC DH8 sing 113 n n CAU CBG DH8 sing 114 n n CAV CBD DH8 sing 115 n n CAV CBK DH8 sing 116 n n CAW CAX DH8 sing 117 n y CAX CBK DH8 sing 118 n n CBC CBI DH8 sing 119 n n CBD NBJ DH8 sing 120 n n CBF CBI DH8 sing 121 n n CBF NBJ DH8 sing 122 n n CBG NBJ DH8 sing 123 n n CBH CBI DH8 sing 124 n n CBH CBK DH8 sing 125 n n C1 H1 DH8 sing 126 n n C2 H2 DH8 sing 127 n n O2 HO2 DH8 sing 128 n n C3 H3 DH8 sing 129 n n O3 HO3 DH8 sing 130 n n C4 H4 DH8 sing 131 n n O4 HO4 DH8 sing 132 n n C5 H5 DH8 sing 133 n n C6 H6 DH8 sing 134 n n C6 H6A DH8 sing 135 n n O6 HO6 DH8 sing 136 n n CAA HAA DH8 sing 137 n n CAA HAAA DH8 sing 138 n n CAA HAAB DH8 sing 139 n n CAB HAB DH8 sing 140 n n CAB HABA DH8 sing 141 n n CAB HABB DH8 sing 142 n n CAH HAH DH8 sing 143 n n CAI HAI DH8 sing 144 n n CAJ HAJ DH8 sing 145 n n CAK HAK DH8 sing 146 n n CAL HAL DH8 sing 147 n n CAN HAN DH8 sing 148 n n CAN HANA DH8 sing 149 n n CAO HAO DH8 sing 150 n n CAO HAOA DH8 sing 151 n n NAP HNAP DH8 sing 152 n n CAV HAV DH8 sing 153 n n CBC HBC DH8 sing 154 n n CBD HBD DH8 sing 155 n n CBF HBF DH8 sing 156 n n CBG HBG DH8 sing 157 n n CBH HBH DH8 sing 158 n n CBI HBI DH8 sing 159 n n # _atom_sites.entry_id 3U57 _atom_sites.fract_transf_matrix[1][1] 0.009534 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007719 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00461 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DH8 A 1 1000 1000 DH8 DHR . D 3 CL A 1 514 1 CL CL . E 2 DH8 B 1 1000 1000 DH8 DHR . F 3 CL B 1 514 1 CL CL . G 4 HOH A 1 515 1 HOH HOH . G 4 HOH A 2 516 3 HOH HOH . G 4 HOH A 3 517 4 HOH HOH . G 4 HOH A 4 518 5 HOH HOH . G 4 HOH A 5 519 6 HOH HOH . G 4 HOH A 6 520 8 HOH HOH . G 4 HOH A 7 521 16 HOH HOH . G 4 HOH A 8 522 17 HOH HOH . G 4 HOH A 9 523 22 HOH HOH . G 4 HOH A 10 524 23 HOH HOH . G 4 HOH A 11 525 24 HOH HOH . G 4 HOH A 12 526 25 HOH HOH . G 4 HOH A 13 527 26 HOH HOH . G 4 HOH A 14 528 29 HOH HOH . G 4 HOH A 15 529 32 HOH HOH . G 4 HOH A 16 530 34 HOH HOH . G 4 HOH A 17 531 35 HOH HOH . G 4 HOH A 18 532 36 HOH HOH . G 4 HOH A 19 533 37 HOH HOH . G 4 HOH A 20 534 38 HOH HOH . G 4 HOH A 21 535 39 HOH HOH . G 4 HOH A 22 536 41 HOH HOH . G 4 HOH A 23 537 44 HOH HOH . G 4 HOH A 24 538 45 HOH HOH . G 4 HOH A 25 539 48 HOH HOH . G 4 HOH A 26 540 49 HOH HOH . G 4 HOH A 27 541 50 HOH HOH . G 4 HOH A 28 542 51 HOH HOH . G 4 HOH A 29 543 52 HOH HOH . G 4 HOH A 30 544 53 HOH HOH . G 4 HOH A 31 545 56 HOH HOH . G 4 HOH A 32 546 57 HOH HOH . G 4 HOH A 33 547 59 HOH HOH . G 4 HOH A 34 548 62 HOH HOH . G 4 HOH A 35 549 64 HOH HOH . G 4 HOH A 36 550 65 HOH HOH . G 4 HOH A 37 551 66 HOH HOH . G 4 HOH A 38 552 67 HOH HOH . G 4 HOH A 39 553 68 HOH HOH . G 4 HOH A 40 554 69 HOH HOH . G 4 HOH A 41 555 73 HOH HOH . G 4 HOH A 42 556 75 HOH HOH . G 4 HOH A 43 557 76 HOH HOH . G 4 HOH A 44 558 77 HOH HOH . G 4 HOH A 45 559 79 HOH HOH . G 4 HOH A 46 560 81 HOH HOH . G 4 HOH A 47 561 82 HOH HOH . G 4 HOH A 48 562 83 HOH HOH . G 4 HOH A 49 563 87 HOH HOH . G 4 HOH A 50 564 89 HOH HOH . G 4 HOH A 51 565 90 HOH HOH . G 4 HOH A 52 566 92 HOH HOH . H 4 HOH B 1 515 2 HOH HOH . H 4 HOH B 2 516 7 HOH HOH . H 4 HOH B 3 517 9 HOH HOH . H 4 HOH B 4 518 10 HOH HOH . H 4 HOH B 5 519 11 HOH HOH . H 4 HOH B 6 520 12 HOH HOH . H 4 HOH B 7 521 13 HOH HOH . H 4 HOH B 8 522 14 HOH HOH . H 4 HOH B 9 523 15 HOH HOH . H 4 HOH B 10 524 18 HOH HOH . H 4 HOH B 11 525 19 HOH HOH . H 4 HOH B 12 526 20 HOH HOH . H 4 HOH B 13 527 21 HOH HOH . H 4 HOH B 14 528 27 HOH HOH . H 4 HOH B 15 529 28 HOH HOH . H 4 HOH B 16 530 30 HOH HOH . H 4 HOH B 17 531 31 HOH HOH . H 4 HOH B 18 532 33 HOH HOH . H 4 HOH B 19 533 40 HOH HOH . H 4 HOH B 20 534 42 HOH HOH . H 4 HOH B 21 535 43 HOH HOH . H 4 HOH B 22 536 46 HOH HOH . H 4 HOH B 23 537 47 HOH HOH . H 4 HOH B 24 538 54 HOH HOH . H 4 HOH B 25 539 55 HOH HOH . H 4 HOH B 26 540 58 HOH HOH . H 4 HOH B 27 541 60 HOH HOH . H 4 HOH B 28 542 61 HOH HOH . H 4 HOH B 29 543 63 HOH HOH . H 4 HOH B 30 544 70 HOH HOH . H 4 HOH B 31 545 71 HOH HOH . H 4 HOH B 32 546 72 HOH HOH . H 4 HOH B 33 547 74 HOH HOH . H 4 HOH B 34 548 78 HOH HOH . H 4 HOH B 35 549 80 HOH HOH . H 4 HOH B 36 550 84 HOH HOH . H 4 HOH B 37 551 85 HOH HOH . H 4 HOH B 38 552 86 HOH HOH . H 4 HOH B 39 553 88 HOH HOH . H 4 HOH B 40 554 91 HOH HOH . H 4 HOH B 41 555 93 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DH8 . . . C 2 34.134 44.415 35.239 1 55.5 ? C1 DH8 1000 A 1 HETATM 2 O O1 DH8 . . . C 2 33.986 44.488 36.669 1 57.07 ? O1 DH8 1000 A 1 HETATM 3 C C2 DH8 . . . C 2 34.518 45.851 34.784 1 55.88 ? C2 DH8 1000 A 1 HETATM 4 O O2 DH8 . . . C 2 33.459 46.806 35.012 1 57.63 ? O2 DH8 1000 A 1 HETATM 5 C C3 DH8 . . . C 2 35.015 45.934 33.326 1 54.62 ? C3 DH8 1000 A 1 HETATM 6 O O3 DH8 . . . C 2 35.725 47.198 33.123 1 53.34 ? O3 DH8 1000 A 1 HETATM 7 C C4 DH8 . . . C 2 35.934 44.728 33.012 1 52.42 ? C4 DH8 1000 A 1 HETATM 8 O O4 DH8 . . . C 2 36.198 44.655 31.605 1 49.07 ? O4 DH8 1000 A 1 HETATM 9 C C5 DH8 . . . C 2 35.331 43.405 33.521 1 52.35 ? C5 DH8 1000 A 1 HETATM 10 O O5 DH8 . . . C 2 35.174 43.464 34.951 1 53.26 ? O5 DH8 1000 A 1 HETATM 11 C C6 DH8 . . . C 2 36.239 42.219 33.176 1 51.55 ? C6 DH8 1000 A 1 HETATM 12 O O6 DH8 . . . C 2 37.439 42.27 33.973 1 51.28 ? O6 DH8 1000 A 1 HETATM 13 C CAA DH8 . . . C 2 30.67 43.895 39.584 1 61.47 ? CAA DH8 1000 A 1 HETATM 14 C CAB DH8 . . . C 2 35.998 40.015 44.075 1 61.56 ? CAB DH8 1000 A 1 HETATM 15 O OAC DH8 . . . C 2 34.964 42.161 43.741 1 60.66 ? OAC DH8 1000 A 1 HETATM 16 C CAH DH8 . . . C 2 31.574 43.667 38.366 1 61.65 ? CAH DH8 1000 A 1 HETATM 17 C CAI DH8 . . . C 2 40.042 42.042 42.669 1 60.93 ? CAI DH8 1000 A 1 HETATM 18 C CAJ DH8 . . . C 2 39.45 40.775 42.605 1 61.94 ? CAJ DH8 1000 A 1 HETATM 19 C CAK DH8 . . . C 2 39.488 43.12 41.979 1 60.2 ? CAK DH8 1000 A 1 HETATM 20 C CAL DH8 . . . C 2 38.291 40.57 41.841 1 62.51 ? CAL DH8 1000 A 1 HETATM 21 C CAN DH8 . . . C 2 34.831 44.334 39.755 1 59.26 ? CAN DH8 1000 A 1 HETATM 22 C CAO DH8 . . . C 2 36.054 40.753 39.267 1 59.73 ? CAO DH8 1000 A 1 HETATM 23 N NAP DH8 . . . C 2 37.623 43.808 40.47 1 60.49 ? NAP DH8 1000 A 1 HETATM 24 O OAQ DH8 . . . C 2 35.073 40.859 41.921 1 60.71 ? OAQ DH8 1000 A 1 HETATM 25 C CAT DH8 . . . C 2 35.306 41.093 43.238 1 60.91 ? CAT DH8 1000 A 1 HETATM 26 C CAU DH8 . . . C 2 32.942 43.434 38.514 1 59.88 ? CAU DH8 1000 A 1 HETATM 27 C CAV DH8 . . . C 2 36.97 43.023 39.413 1 59.93 ? CAV DH8 1000 A 1 HETATM 28 C CAW DH8 . . . C 2 38.334 42.938 41.214 1 61.2 ? CAW DH8 1000 A 1 HETATM 29 C CAX DH8 . . . C 2 37.739 41.65 41.138 1 61.82 ? CAX DH8 1000 A 1 HETATM 30 C CBC DH8 . . . C 2 33.622 43.411 39.866 1 59.77 ? CBC DH8 1000 A 1 HETATM 31 C CBD DH8 . . . C 2 35.798 43.717 38.73 1 59.51 ? CBD DH8 1000 A 1 HETATM 32 C CBF DH8 . . . C 2 34.786 41.491 38.788 1 59.63 ? CBF DH8 1000 A 1 HETATM 33 C CBG DH8 . . . C 2 33.855 43.207 37.32 1 58.96 ? CBG DH8 1000 A 1 HETATM 34 C CBH DH8 . . . C 2 35.248 42.02 41.105 1 60.39 ? CBH DH8 1000 A 1 HETATM 35 C CBI DH8 . . . C 2 34.121 41.998 40.087 1 59.59 ? CBI DH8 1000 A 1 HETATM 36 N NBJ DH8 . . . C 2 35.104 42.68 37.933 1 60.15 ? NBJ DH8 1000 A 1 HETATM 37 C CBK DH8 . . . C 2 36.511 41.818 40.232 1 60.9 ? CBK DH8 1000 A 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 45 _model_server_stats.query_time_ms 900 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 37 #