data_3U57 # _model_server_result.job_id xl5pcua6YPIOxI04FVNIYA _model_server_result.datetime_utc '2025-02-26 13:06:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3u57 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1000}' # _entry.id 3U57 # _exptl.entry_id 3U57 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 514.567 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2beta,7beta,16S,17R,19E,21beta)-21-(beta-D-glucopyranosyloxy)-2,7-dihydro-7,17-cyclosarpagan-17-yl acetate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3U57 _cell.length_a 104.885 _cell.length_b 129.552 _cell.length_c 216.918 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3U57 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 104.885 129.552 0 3 'crystal symmetry operation' 3_655 -x+1,y,-z -1 0 0 0 1 0 0 0 -1 104.885 0 0 4 'crystal symmetry operation' 4_565 x,-y+1,-z 1 0 0 0 -1 0 0 0 -1 0 129.552 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # _chem_comp.formula 'C27 H34 N2 O8' _chem_comp.formula_weight 514.567 _chem_comp.id DH8 _chem_comp.mon_nstd_flag . _chem_comp.name '(2beta,7beta,16S,17R,19E,21beta)-21-(beta-D-glucopyranosyloxy)-2,7-dihydro-7,17-cyclosarpagan-17-yl acetate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 DH8 sing 83 n n C1 C2 DH8 sing 84 n n C1 O5 DH8 sing 85 n n O1 CBG DH8 sing 86 n n C2 O2 DH8 sing 87 n n C2 C3 DH8 sing 88 n n C3 O3 DH8 sing 89 n n C3 C4 DH8 sing 90 n n C4 O4 DH8 sing 91 n n C4 C5 DH8 sing 92 n n C5 O5 DH8 sing 93 n n C5 C6 DH8 sing 94 n n C6 O6 DH8 sing 95 n n CAA CAH DH8 sing 96 n n CAB CAT DH8 sing 97 n n OAC CAT DH8 doub 98 n n CAH CAU DH8 doub 99 e n CAI CAJ DH8 doub 100 n y CAI CAK DH8 sing 101 n y CAJ CAL DH8 sing 102 n y CAK CAW DH8 doub 103 n y CAL CAX DH8 doub 104 n y CAN CBC DH8 sing 105 n n CAN CBD DH8 sing 106 n n CAO CBF DH8 sing 107 n n CAO CBK DH8 sing 108 n n NAP CAV DH8 sing 109 n n NAP CAW DH8 sing 110 n n OAQ CAT DH8 sing 111 n n OAQ CBH DH8 sing 112 n n CAU CBC DH8 sing 113 n n CAU CBG DH8 sing 114 n n CAV CBD DH8 sing 115 n n CAV CBK DH8 sing 116 n n CAW CAX DH8 sing 117 n y CAX CBK DH8 sing 118 n n CBC CBI DH8 sing 119 n n CBD NBJ DH8 sing 120 n n CBF CBI DH8 sing 121 n n CBF NBJ DH8 sing 122 n n CBG NBJ DH8 sing 123 n n CBH CBI DH8 sing 124 n n CBH CBK DH8 sing 125 n n C1 H1 DH8 sing 126 n n C2 H2 DH8 sing 127 n n O2 HO2 DH8 sing 128 n n C3 H3 DH8 sing 129 n n O3 HO3 DH8 sing 130 n n C4 H4 DH8 sing 131 n n O4 HO4 DH8 sing 132 n n C5 H5 DH8 sing 133 n n C6 H6 DH8 sing 134 n n C6 H6A DH8 sing 135 n n O6 HO6 DH8 sing 136 n n CAA HAA DH8 sing 137 n n CAA HAAA DH8 sing 138 n n CAA HAAB DH8 sing 139 n n CAB HAB DH8 sing 140 n n CAB HABA DH8 sing 141 n n CAB HABB DH8 sing 142 n n CAH HAH DH8 sing 143 n n CAI HAI DH8 sing 144 n n CAJ HAJ DH8 sing 145 n n CAK HAK DH8 sing 146 n n CAL HAL DH8 sing 147 n n CAN HAN DH8 sing 148 n n CAN HANA DH8 sing 149 n n CAO HAO DH8 sing 150 n n CAO HAOA DH8 sing 151 n n NAP HNAP DH8 sing 152 n n CAV HAV DH8 sing 153 n n CBC HBC DH8 sing 154 n n CBD HBD DH8 sing 155 n n CBF HBF DH8 sing 156 n n CBG HBG DH8 sing 157 n n CBH HBH DH8 sing 158 n n CBI HBI DH8 sing 159 n n # _atom_sites.entry_id 3U57 _atom_sites.fract_transf_matrix[1][1] 0.009534 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007719 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00461 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DH8 A 1 1000 1000 DH8 DHR . D 3 CL A 1 514 1 CL CL . E 2 DH8 B 1 1000 1000 DH8 DHR . F 3 CL B 1 514 1 CL CL . G 4 HOH A 1 515 1 HOH HOH . G 4 HOH A 2 516 3 HOH HOH . G 4 HOH A 3 517 4 HOH HOH . G 4 HOH A 4 518 5 HOH HOH . G 4 HOH A 5 519 6 HOH HOH . G 4 HOH A 6 520 8 HOH HOH . G 4 HOH A 7 521 16 HOH HOH . G 4 HOH A 8 522 17 HOH HOH . G 4 HOH A 9 523 22 HOH HOH . G 4 HOH A 10 524 23 HOH HOH . G 4 HOH A 11 525 24 HOH HOH . G 4 HOH A 12 526 25 HOH HOH . G 4 HOH A 13 527 26 HOH HOH . G 4 HOH A 14 528 29 HOH HOH . G 4 HOH A 15 529 32 HOH HOH . G 4 HOH A 16 530 34 HOH HOH . G 4 HOH A 17 531 35 HOH HOH . G 4 HOH A 18 532 36 HOH HOH . G 4 HOH A 19 533 37 HOH HOH . G 4 HOH A 20 534 38 HOH HOH . G 4 HOH A 21 535 39 HOH HOH . G 4 HOH A 22 536 41 HOH HOH . G 4 HOH A 23 537 44 HOH HOH . G 4 HOH A 24 538 45 HOH HOH . G 4 HOH A 25 539 48 HOH HOH . G 4 HOH A 26 540 49 HOH HOH . G 4 HOH A 27 541 50 HOH HOH . G 4 HOH A 28 542 51 HOH HOH . G 4 HOH A 29 543 52 HOH HOH . G 4 HOH A 30 544 53 HOH HOH . G 4 HOH A 31 545 56 HOH HOH . G 4 HOH A 32 546 57 HOH HOH . G 4 HOH A 33 547 59 HOH HOH . G 4 HOH A 34 548 62 HOH HOH . G 4 HOH A 35 549 64 HOH HOH . G 4 HOH A 36 550 65 HOH HOH . G 4 HOH A 37 551 66 HOH HOH . G 4 HOH A 38 552 67 HOH HOH . G 4 HOH A 39 553 68 HOH HOH . G 4 HOH A 40 554 69 HOH HOH . G 4 HOH A 41 555 73 HOH HOH . G 4 HOH A 42 556 75 HOH HOH . G 4 HOH A 43 557 76 HOH HOH . G 4 HOH A 44 558 77 HOH HOH . G 4 HOH A 45 559 79 HOH HOH . G 4 HOH A 46 560 81 HOH HOH . G 4 HOH A 47 561 82 HOH HOH . G 4 HOH A 48 562 83 HOH HOH . G 4 HOH A 49 563 87 HOH HOH . G 4 HOH A 50 564 89 HOH HOH . G 4 HOH A 51 565 90 HOH HOH . G 4 HOH A 52 566 92 HOH HOH . H 4 HOH B 1 515 2 HOH HOH . H 4 HOH B 2 516 7 HOH HOH . H 4 HOH B 3 517 9 HOH HOH . H 4 HOH B 4 518 10 HOH HOH . H 4 HOH B 5 519 11 HOH HOH . H 4 HOH B 6 520 12 HOH HOH . H 4 HOH B 7 521 13 HOH HOH . H 4 HOH B 8 522 14 HOH HOH . H 4 HOH B 9 523 15 HOH HOH . H 4 HOH B 10 524 18 HOH HOH . H 4 HOH B 11 525 19 HOH HOH . H 4 HOH B 12 526 20 HOH HOH . H 4 HOH B 13 527 21 HOH HOH . H 4 HOH B 14 528 27 HOH HOH . H 4 HOH B 15 529 28 HOH HOH . H 4 HOH B 16 530 30 HOH HOH . H 4 HOH B 17 531 31 HOH HOH . H 4 HOH B 18 532 33 HOH HOH . H 4 HOH B 19 533 40 HOH HOH . H 4 HOH B 20 534 42 HOH HOH . H 4 HOH B 21 535 43 HOH HOH . H 4 HOH B 22 536 46 HOH HOH . H 4 HOH B 23 537 47 HOH HOH . H 4 HOH B 24 538 54 HOH HOH . H 4 HOH B 25 539 55 HOH HOH . H 4 HOH B 26 540 58 HOH HOH . H 4 HOH B 27 541 60 HOH HOH . H 4 HOH B 28 542 61 HOH HOH . H 4 HOH B 29 543 63 HOH HOH . H 4 HOH B 30 544 70 HOH HOH . H 4 HOH B 31 545 71 HOH HOH . H 4 HOH B 32 546 72 HOH HOH . H 4 HOH B 33 547 74 HOH HOH . H 4 HOH B 34 548 78 HOH HOH . H 4 HOH B 35 549 80 HOH HOH . H 4 HOH B 36 550 84 HOH HOH . H 4 HOH B 37 551 85 HOH HOH . H 4 HOH B 38 552 86 HOH HOH . H 4 HOH B 39 553 88 HOH HOH . H 4 HOH B 40 554 91 HOH HOH . H 4 HOH B 41 555 93 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 DH8 . . . E 2 70.715 29.623 20.083 1 62.34 ? C1 DH8 1000 B 1 HETATM 2 O O1 DH8 . . . E 2 70.951 28.173 20.01 1 62.75 ? O1 DH8 1000 B 1 HETATM 3 C C2 DH8 . . . E 2 70.391 30.188 18.668 1 61.13 ? C2 DH8 1000 B 1 HETATM 4 O O2 DH8 . . . E 2 71.579 30.298 17.878 1 61.91 ? O2 DH8 1000 B 1 HETATM 5 C C3 DH8 . . . E 2 69.671 31.551 18.658 1 60.7 ? C3 DH8 1000 B 1 HETATM 6 O O3 DH8 . . . E 2 68.792 31.616 17.498 1 57.71 ? O3 DH8 1000 B 1 HETATM 7 C C4 DH8 . . . E 2 68.886 31.85 19.965 1 60.29 ? C4 DH8 1000 B 1 HETATM 8 O O4 DH8 . . . E 2 68.804 33.262 20.152 1 60.19 ? O4 DH8 1000 B 1 HETATM 9 C C5 DH8 . . . E 2 69.54 31.257 21.22 1 60.54 ? C5 DH8 1000 B 1 HETATM 10 O O5 DH8 . . . E 2 69.669 29.852 21.077 1 61.25 ? O5 DH8 1000 B 1 HETATM 11 C C6 DH8 . . . E 2 68.69 31.521 22.465 1 59.89 ? C6 DH8 1000 B 1 HETATM 12 O O6 DH8 . . . E 2 67.434 30.86 22.336 1 59.17 ? O6 DH8 1000 B 1 HETATM 13 C CAA DH8 . . . E 2 74.369 25.476 21.029 1 63.77 ? CAA DH8 1000 B 1 HETATM 14 C CAB DH8 . . . E 2 68.962 21.44 25.295 1 63.33 ? CAB DH8 1000 B 1 HETATM 15 O OAC DH8 . . . E 2 69.622 21.043 22.987 1 62.98 ? OAC DH8 1000 B 1 HETATM 16 C CAH DH8 . . . E 2 73.373 26.646 21.109 1 64.24 ? CAH DH8 1000 B 1 HETATM 17 C CAI DH8 . . . E 2 65.006 22.176 23.074 1 60.55 ? CAI DH8 1000 B 1 HETATM 18 C CAJ DH8 . . . E 2 65.652 22.346 24.299 1 60.63 ? CAJ DH8 1000 B 1 HETATM 19 C CAK DH8 . . . E 2 65.493 22.781 21.92 1 59.98 ? CAK DH8 1000 B 1 HETATM 20 C CAL DH8 . . . E 2 66.799 23.127 24.374 1 60.53 ? CAL DH8 1000 B 1 HETATM 21 C CAN DH8 . . . E 2 70.172 24.98 20.412 1 62.12 ? CAN DH8 1000 B 1 HETATM 22 C CAO DH8 . . . E 2 68.874 25.725 23.903 1 61.48 ? CAO DH8 1000 B 1 HETATM 23 N NAP DH8 . . . E 2 67.297 24.238 21.014 1 60.61 ? NAP DH8 1000 B 1 HETATM 24 O OAQ DH8 . . . E 2 70.317 22.988 23.847 1 63.14 ? OAQ DH8 1000 B 1 HETATM 25 C CAT DH8 . . . E 2 69.657 21.8 23.961 1 63.63 ? CAT DH8 1000 B 1 HETATM 26 C CAU DH8 . . . E 2 71.998 26.43 21.236 1 63.34 ? CAU DH8 1000 B 1 HETATM 27 C CAV DH8 . . . E 2 67.987 25.338 21.696 1 61.22 ? CAV DH8 1000 B 1 HETATM 28 C CAW DH8 . . . E 2 66.638 23.567 21.98 1 60.43 ? CAW DH8 1000 B 1 HETATM 29 C CAX DH8 . . . E 2 67.283 23.738 23.22 1 60.65 ? CAX DH8 1000 B 1 HETATM 30 C CBC DH8 . . . E 2 71.392 25.046 21.328 1 62.96 ? CBC DH8 1000 B 1 HETATM 31 C CBD DH8 . . . E 2 69.142 25.995 20.931 1 61.6 ? CBD DH8 1000 B 1 HETATM 32 C CBF DH8 . . . E 2 70.128 26.211 23.133 1 62.59 ? CBF DH8 1000 B 1 HETATM 33 C CBG DH8 . . . E 2 71.01 27.576 21.334 1 62.76 ? CBG DH8 1000 B 1 HETATM 34 C CBH DH8 . . . E 2 69.819 23.815 22.755 1 62.58 ? CBH DH8 1000 B 1 HETATM 35 C CBI DH8 . . . E 2 70.877 24.913 22.741 1 62.69 ? CBI DH8 1000 B 1 HETATM 36 N NBJ DH8 . . . E 2 69.778 26.939 21.882 1 62.41 ? NBJ DH8 1000 B 1 HETATM 37 C CBK DH8 . . . E 2 68.483 24.634 22.944 1 61.68 ? CBK DH8 1000 B 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 211 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 37 #