data_3U5J
#
_model_server_result.job_id            F4Fe8c-iWP5TIDQtaUyNXA 
_model_server_result.datetime_utc      '2024-12-01 23:24:47' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3u5j 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":2}' 
#
_entry.id    3U5J 
#
_exptl.entry_id    3U5J 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3U5J 
_cell.length_a            37.3 
_cell.length_b            44.21 
_cell.length_c            78.36 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3U5J 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
? 3 E N N 
? 3 F N N 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 121 n n 
C1 C2 EDO sing 122 n n 
C1 H11 EDO sing 123 n n 
C1 H12 EDO sing 124 n n 
O1 HO1 EDO sing 125 n n 
C2 O2 EDO sing 126 n n 
C2 H21 EDO sing 127 n n 
C2 H22 EDO sing 128 n n 
O2 HO2 EDO sing 129 n n 
#
_atom_sites.entry_id                     3U5J 
_atom_sites.fract_transf_matrix[1][1]    0.02681 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.022619 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012762 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 08H A 1 1 1 08H DRG . 
C 3 EDO A 1 169 1 EDO EDO . 
D 3 EDO A 1 2 2 EDO EDO . 
E 3 EDO A 1 3 3 EDO EDO . 
F 3 EDO A 1 4 4 EDO EDO . 
G 4 HOH A 1 5 5 HOH HOH . 
G 4 HOH A 2 6 6 HOH HOH . 
G 4 HOH A 3 7 7 HOH HOH . 
G 4 HOH A 4 8 8 HOH HOH . 
G 4 HOH A 5 9 9 HOH HOH . 
G 4 HOH A 6 10 10 HOH HOH . 
G 4 HOH A 7 11 11 HOH HOH . 
G 4 HOH A 8 12 12 HOH HOH . 
G 4 HOH A 9 13 13 HOH HOH . 
G 4 HOH A 10 14 14 HOH HOH . 
G 4 HOH A 11 15 15 HOH HOH . 
G 4 HOH A 12 16 16 HOH HOH . 
G 4 HOH A 13 17 17 HOH HOH . 
G 4 HOH A 14 18 18 HOH HOH . 
G 4 HOH A 15 19 19 HOH HOH . 
G 4 HOH A 16 20 20 HOH HOH . 
G 4 HOH A 17 21 21 HOH HOH . 
G 4 HOH A 18 22 22 HOH HOH . 
G 4 HOH A 19 23 23 HOH HOH . 
G 4 HOH A 20 24 24 HOH HOH . 
G 4 HOH A 21 25 25 HOH HOH . 
G 4 HOH A 22 26 26 HOH HOH . 
G 4 HOH A 23 28 28 HOH HOH . 
G 4 HOH A 24 29 29 HOH HOH . 
G 4 HOH A 25 30 30 HOH HOH . 
G 4 HOH A 26 31 31 HOH HOH . 
G 4 HOH A 27 32 32 HOH HOH . 
G 4 HOH A 28 33 33 HOH HOH . 
G 4 HOH A 29 34 34 HOH HOH . 
G 4 HOH A 30 35 35 HOH HOH . 
G 4 HOH A 31 36 36 HOH HOH . 
G 4 HOH A 32 37 37 HOH HOH . 
G 4 HOH A 33 38 38 HOH HOH . 
G 4 HOH A 34 39 39 HOH HOH . 
G 4 HOH A 35 40 40 HOH HOH . 
G 4 HOH A 36 41 41 HOH HOH . 
G 4 HOH A 37 170 1 HOH HOH . 
G 4 HOH A 38 171 171 HOH HOH . 
G 4 HOH A 39 172 172 HOH HOH . 
G 4 HOH A 40 173 173 HOH HOH . 
G 4 HOH A 41 174 174 HOH HOH . 
G 4 HOH A 42 175 175 HOH HOH . 
G 4 HOH A 43 176 176 HOH HOH . 
G 4 HOH A 44 177 177 HOH HOH . 
G 4 HOH A 45 178 2 HOH HOH . 
G 4 HOH A 46 179 179 HOH HOH . 
G 4 HOH A 47 180 180 HOH HOH . 
G 4 HOH A 48 181 181 HOH HOH . 
G 4 HOH A 49 182 182 HOH HOH . 
G 4 HOH A 50 183 183 HOH HOH . 
G 4 HOH A 51 184 184 HOH HOH . 
G 4 HOH A 52 185 185 HOH HOH . 
G 4 HOH A 53 186 186 HOH HOH . 
G 4 HOH A 54 187 187 HOH HOH . 
G 4 HOH A 55 188 188 HOH HOH . 
G 4 HOH A 56 189 189 HOH HOH . 
G 4 HOH A 57 190 190 HOH HOH . 
G 4 HOH A 58 191 191 HOH HOH . 
G 4 HOH A 59 192 192 HOH HOH . 
G 4 HOH A 60 193 193 HOH HOH . 
G 4 HOH A 61 194 194 HOH HOH . 
G 4 HOH A 62 195 195 HOH HOH . 
G 4 HOH A 63 196 196 HOH HOH . 
G 4 HOH A 64 197 197 HOH HOH . 
G 4 HOH A 65 198 198 HOH HOH . 
G 4 HOH A 66 199 199 HOH HOH . 
G 4 HOH A 67 200 200 HOH HOH . 
G 4 HOH A 68 201 201 HOH HOH . 
G 4 HOH A 69 202 202 HOH HOH . 
G 4 HOH A 70 203 203 HOH HOH . 
G 4 HOH A 71 204 204 HOH HOH . 
G 4 HOH A 72 205 205 HOH HOH . 
G 4 HOH A 73 206 206 HOH HOH . 
G 4 HOH A 74 207 207 HOH HOH . 
G 4 HOH A 75 208 208 HOH HOH . 
G 4 HOH A 76 209 209 HOH HOH . 
G 4 HOH A 77 210 210 HOH HOH . 
G 4 HOH A 78 211 211 HOH HOH . 
G 4 HOH A 79 212 212 HOH HOH . 
G 4 HOH A 80 213 213 HOH HOH . 
G 4 HOH A 81 214 214 HOH HOH . 
G 4 HOH A 82 215 215 HOH HOH . 
G 4 HOH A 83 216 216 HOH HOH . 
G 4 HOH A 84 217 217 HOH HOH . 
G 4 HOH A 85 218 218 HOH HOH . 
G 4 HOH A 86 219 219 HOH HOH . 
G 4 HOH A 87 220 220 HOH HOH . 
G 4 HOH A 88 221 221 HOH HOH . 
G 4 HOH A 89 222 222 HOH HOH . 
G 4 HOH A 90 223 223 HOH HOH . 
G 4 HOH A 91 224 3 HOH HOH . 
G 4 HOH A 92 225 4 HOH HOH . 
G 4 HOH A 93 226 42 HOH HOH . 
G 4 HOH A 94 227 43 HOH HOH . 
G 4 HOH A 95 228 44 HOH HOH . 
G 4 HOH A 96 229 45 HOH HOH . 
G 4 HOH A 97 230 47 HOH HOH . 
G 4 HOH A 98 231 48 HOH HOH . 
G 4 HOH A 99 232 49 HOH HOH . 
G 4 HOH A 100 233 50 HOH HOH . 
G 4 HOH A 101 234 51 HOH HOH . 
G 4 HOH A 102 235 52 HOH HOH . 
G 4 HOH A 103 236 53 HOH HOH . 
G 4 HOH A 104 237 54 HOH HOH . 
G 4 HOH A 105 238 55 HOH HOH . 
G 4 HOH A 106 239 56 HOH HOH . 
G 4 HOH A 107 240 57 HOH HOH . 
G 4 HOH A 108 241 58 HOH HOH . 
G 4 HOH A 109 242 59 HOH HOH . 
G 4 HOH A 110 243 60 HOH HOH . 
G 4 HOH A 111 244 61 HOH HOH . 
G 4 HOH A 112 245 62 HOH HOH . 
G 4 HOH A 113 246 63 HOH HOH . 
G 4 HOH A 114 247 64 HOH HOH . 
G 4 HOH A 115 248 65 HOH HOH . 
G 4 HOH A 116 249 66 HOH HOH . 
G 4 HOH A 117 250 67 HOH HOH . 
G 4 HOH A 118 251 68 HOH HOH . 
G 4 HOH A 119 252 69 HOH HOH . 
G 4 HOH A 120 253 70 HOH HOH . 
G 4 HOH A 121 254 71 HOH HOH . 
G 4 HOH A 122 255 72 HOH HOH . 
G 4 HOH A 123 256 73 HOH HOH . 
G 4 HOH A 124 257 74 HOH HOH . 
G 4 HOH A 125 258 75 HOH HOH . 
G 4 HOH A 126 259 76 HOH HOH . 
G 4 HOH A 127 260 77 HOH HOH . 
G 4 HOH A 128 261 79 HOH HOH . 
G 4 HOH A 129 262 80 HOH HOH . 
G 4 HOH A 130 263 81 HOH HOH . 
G 4 HOH A 131 264 82 HOH HOH . 
G 4 HOH A 132 265 83 HOH HOH . 
G 4 HOH A 133 266 84 HOH HOH . 
G 4 HOH A 134 267 85 HOH HOH . 
G 4 HOH A 135 268 86 HOH HOH . 
G 4 HOH A 136 269 87 HOH HOH . 
G 4 HOH A 137 270 88 HOH HOH . 
G 4 HOH A 138 271 89 HOH HOH . 
G 4 HOH A 139 272 90 HOH HOH . 
G 4 HOH A 140 273 91 HOH HOH . 
G 4 HOH A 141 274 92 HOH HOH . 
G 4 HOH A 142 275 93 HOH HOH . 
G 4 HOH A 143 276 94 HOH HOH . 
G 4 HOH A 144 277 95 HOH HOH . 
G 4 HOH A 145 278 96 HOH HOH . 
G 4 HOH A 146 279 97 HOH HOH . 
G 4 HOH A 147 280 98 HOH HOH . 
G 4 HOH A 148 281 99 HOH HOH . 
G 4 HOH A 149 282 100 HOH HOH . 
G 4 HOH A 150 283 101 HOH HOH . 
G 4 HOH A 151 284 102 HOH HOH . 
G 4 HOH A 152 285 103 HOH HOH . 
G 4 HOH A 153 286 104 HOH HOH . 
G 4 HOH A 154 287 105 HOH HOH . 
G 4 HOH A 155 288 106 HOH HOH . 
G 4 HOH A 156 289 107 HOH HOH . 
G 4 HOH A 157 290 108 HOH HOH . 
G 4 HOH A 158 291 109 HOH HOH . 
G 4 HOH A 159 292 110 HOH HOH . 
G 4 HOH A 160 293 111 HOH HOH . 
G 4 HOH A 161 294 112 HOH HOH . 
G 4 HOH A 162 295 113 HOH HOH . 
G 4 HOH A 163 296 114 HOH HOH . 
G 4 HOH A 164 297 115 HOH HOH . 
G 4 HOH A 165 298 116 HOH HOH . 
G 4 HOH A 166 299 117 HOH HOH . 
G 4 HOH A 167 300 118 HOH HOH . 
G 4 HOH A 168 301 119 HOH HOH . 
G 4 HOH A 169 302 120 HOH HOH . 
G 4 HOH A 170 303 121 HOH HOH . 
G 4 HOH A 171 304 122 HOH HOH . 
G 4 HOH A 172 305 123 HOH HOH . 
G 4 HOH A 173 306 124 HOH HOH . 
G 4 HOH A 174 307 125 HOH HOH . 
G 4 HOH A 175 308 126 HOH HOH . 
G 4 HOH A 176 309 127 HOH HOH . 
G 4 HOH A 177 310 128 HOH HOH . 
G 4 HOH A 178 311 129 HOH HOH . 
G 4 HOH A 179 312 130 HOH HOH . 
G 4 HOH A 180 313 131 HOH HOH . 
G 4 HOH A 181 314 132 HOH HOH . 
G 4 HOH A 182 315 133 HOH HOH . 
G 4 HOH A 183 316 134 HOH HOH . 
G 4 HOH A 184 317 136 HOH HOH . 
G 4 HOH A 185 318 137 HOH HOH . 
G 4 HOH A 186 319 138 HOH HOH . 
G 4 HOH A 187 320 139 HOH HOH . 
G 4 HOH A 188 321 140 HOH HOH . 
G 4 HOH A 189 322 141 HOH HOH . 
G 4 HOH A 190 323 142 HOH HOH . 
G 4 HOH A 191 324 143 HOH HOH . 
G 4 HOH A 192 325 144 HOH HOH . 
G 4 HOH A 193 326 145 HOH HOH . 
G 4 HOH A 194 327 146 HOH HOH . 
G 4 HOH A 195 328 147 HOH HOH . 
G 4 HOH A 196 329 148 HOH HOH . 
G 4 HOH A 197 330 149 HOH HOH . 
G 4 HOH A 198 331 150 HOH HOH . 
G 4 HOH A 199 332 151 HOH HOH . 
G 4 HOH A 200 333 152 HOH HOH . 
G 4 HOH A 201 334 153 HOH HOH . 
G 4 HOH A 202 335 154 HOH HOH . 
G 4 HOH A 203 336 155 HOH HOH . 
G 4 HOH A 204 337 156 HOH HOH . 
G 4 HOH A 205 338 157 HOH HOH . 
G 4 HOH A 206 339 158 HOH HOH . 
G 4 HOH A 207 340 159 HOH HOH . 
G 4 HOH A 208 341 160 HOH HOH . 
G 4 HOH A 209 342 162 HOH HOH . 
G 4 HOH A 210 343 163 HOH HOH . 
G 4 HOH A 211 344 164 HOH HOH . 
G 4 HOH A 212 345 165 HOH HOH . 
G 4 HOH A 213 346 166 HOH HOH . 
G 4 HOH A 214 347 167 HOH HOH . 
G 4 HOH A 215 348 168 HOH HOH . 
G 4 HOH A 216 349 169 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . D 3 42.607 5.389 7.214 1 47.62 ? C1 EDO 2 A 1 
HETATM 2 O O1 EDO . . . D 3 43.269 5.678 8.464 1 32.98 ? O1 EDO 2 A 1 
HETATM 3 C C2 EDO . . . D 3 41.368 6.263 7.025 1 43.51 ? C2 EDO 2 A 1 
HETATM 4 O O2 EDO . . . D 3 41.71 7.661 7.015 1 29.48 ? O2 EDO 2 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           277 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           4 
#