data_3U5K # _model_server_result.job_id WgTwEu3yOOn4OJC-GkdvWQ _model_server_result.datetime_utc '2024-12-01 20:55:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3u5k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1}' # _entry.id 3U5K # _exptl.entry_id 3U5K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 325.767 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 8-chloro-6-(2-fluorophenyl)-1-methyl-4H-imidazo[1,5-a][1,4]benzodiazepine _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 3U5K _cell.length_a 89.55 _cell.length_b 89.55 _cell.length_c 64.411 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3U5K _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,I 1 1 B,F,J 2 1 C,G,K 3 1 D,H,L 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C18 H13 Cl F N3' _chem_comp.formula_weight 325.767 _chem_comp.id 08J _chem_comp.mon_nstd_flag . _chem_comp.name 8-chloro-6-(2-fluorophenyl)-1-methyl-4H-imidazo[1,5-a][1,4]benzodiazepine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms Midazolam # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAJ NAN 08J sing 1 n y CAJ CAS 08J doub 2 n y NAN CAR 08J doub 3 n y CAS CAL 08J sing 4 n n CAS NAW 08J sing 5 n y CAR CAA 08J sing 6 n n CAR NAW 08J sing 7 n y CAL NAM 08J sing 8 n n NAW CAV 08J sing 9 n n NAM CAO 08J doub 10 n n CAV CAI 08J doub 11 n y CAV CAU 08J sing 12 n y FAB CAQ 08J sing 13 n n CAO CAU 08J sing 14 n n CAO CAT 08J sing 15 n n CAI CAH 08J sing 16 n y CAU CAK 08J doub 17 n y CAQ CAT 08J doub 18 n y CAQ CAF 08J sing 19 n y CAT CAG 08J sing 20 n y CAF CAD 08J doub 21 n y CAG CAE 08J doub 22 n y CAH CAP 08J doub 23 n y CAK CAP 08J sing 24 n y CAD CAE 08J sing 25 n y CAP CLAC 08J sing 26 n n CAK H1 08J sing 27 n n CAH H2 08J sing 28 n n CAI H3 08J sing 29 n n CAA H4 08J sing 30 n n CAA H5 08J sing 31 n n CAA H6 08J sing 32 n n CAJ H7 08J sing 33 n n CAL H8 08J sing 34 n n CAL H9 08J sing 35 n n CAG H10 08J sing 36 n n CAE H11 08J sing 37 n n CAD H12 08J sing 38 n n CAF H13 08J sing 39 n n # _atom_sites.entry_id 3U5K _atom_sites.fract_transf_matrix[1][1] 0.011167 _atom_sites.fract_transf_matrix[1][2] 0.006447 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012895 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015525 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 08J A 1 1 1 08J DRG . F 2 08J B 1 2 2 08J DRG . G 2 08J C 1 3 3 08J DRG . H 2 08J D 1 4 4 08J DRG . I 3 HOH A 1 5 5 HOH HOH . I 3 HOH A 2 12 12 HOH HOH . I 3 HOH A 3 14 14 HOH HOH . I 3 HOH A 4 15 15 HOH HOH . I 3 HOH A 5 16 16 HOH HOH . I 3 HOH A 6 18 18 HOH HOH . I 3 HOH A 7 19 19 HOH HOH . I 3 HOH A 8 20 20 HOH HOH . I 3 HOH A 9 24 24 HOH HOH . I 3 HOH A 10 25 25 HOH HOH . I 3 HOH A 11 29 29 HOH HOH . I 3 HOH A 12 33 33 HOH HOH . I 3 HOH A 13 34 34 HOH HOH . I 3 HOH A 14 35 35 HOH HOH . I 3 HOH A 15 36 36 HOH HOH . I 3 HOH A 16 169 47 HOH HOH . I 3 HOH A 17 170 170 HOH HOH . I 3 HOH A 18 171 171 HOH HOH . I 3 HOH A 19 172 49 HOH HOH . I 3 HOH A 20 173 173 HOH HOH . I 3 HOH A 21 174 174 HOH HOH . I 3 HOH A 22 175 175 HOH HOH . I 3 HOH A 23 176 176 HOH HOH . I 3 HOH A 24 177 177 HOH HOH . I 3 HOH A 25 178 178 HOH HOH . I 3 HOH A 26 179 179 HOH HOH . I 3 HOH A 27 180 55 HOH HOH . I 3 HOH A 28 181 61 HOH HOH . I 3 HOH A 29 182 62 HOH HOH . I 3 HOH A 30 183 63 HOH HOH . I 3 HOH A 31 184 64 HOH HOH . I 3 HOH A 32 185 185 HOH HOH . I 3 HOH A 33 186 67 HOH HOH . I 3 HOH A 34 187 72 HOH HOH . I 3 HOH A 35 188 87 HOH HOH . I 3 HOH A 36 189 93 HOH HOH . I 3 HOH A 37 190 96 HOH HOH . I 3 HOH A 38 191 99 HOH HOH . I 3 HOH A 39 192 104 HOH HOH . I 3 HOH A 40 193 105 HOH HOH . I 3 HOH A 41 194 113 HOH HOH . I 3 HOH A 42 195 114 HOH HOH . I 3 HOH A 43 196 116 HOH HOH . I 3 HOH A 44 197 117 HOH HOH . I 3 HOH A 45 198 118 HOH HOH . I 3 HOH A 46 199 119 HOH HOH . I 3 HOH A 47 200 125 HOH HOH . I 3 HOH A 48 201 127 HOH HOH . I 3 HOH A 49 202 128 HOH HOH . I 3 HOH A 50 203 130 HOH HOH . I 3 HOH A 51 204 132 HOH HOH . I 3 HOH A 52 205 136 HOH HOH . I 3 HOH A 53 206 155 HOH HOH . I 3 HOH A 54 207 156 HOH HOH . I 3 HOH A 55 219 219 HOH HOH . I 3 HOH A 56 223 223 HOH HOH . J 3 HOH B 1 1 1 HOH HOH . J 3 HOH B 2 3 3 HOH HOH . J 3 HOH B 3 4 4 HOH HOH . J 3 HOH B 4 6 6 HOH HOH . J 3 HOH B 5 7 7 HOH HOH . J 3 HOH B 6 8 8 HOH HOH . J 3 HOH B 7 9 9 HOH HOH . J 3 HOH B 8 10 10 HOH HOH . J 3 HOH B 9 13 13 HOH HOH . J 3 HOH B 10 21 21 HOH HOH . J 3 HOH B 11 26 26 HOH HOH . J 3 HOH B 12 31 31 HOH HOH . J 3 HOH B 13 38 38 HOH HOH . J 3 HOH B 14 41 41 HOH HOH . J 3 HOH B 15 169 2 HOH HOH . J 3 HOH B 16 170 42 HOH HOH . J 3 HOH B 17 171 44 HOH HOH . J 3 HOH B 18 172 172 HOH HOH . J 3 HOH B 19 173 46 HOH HOH . J 3 HOH B 20 174 48 HOH HOH . J 3 HOH B 21 175 54 HOH HOH . J 3 HOH B 22 176 56 HOH HOH . J 3 HOH B 23 177 58 HOH HOH . J 3 HOH B 24 178 60 HOH HOH . J 3 HOH B 25 179 68 HOH HOH . J 3 HOH B 26 180 180 HOH HOH . J 3 HOH B 27 181 181 HOH HOH . J 3 HOH B 28 182 182 HOH HOH . J 3 HOH B 29 183 183 HOH HOH . J 3 HOH B 30 184 184 HOH HOH . J 3 HOH B 31 185 75 HOH HOH . J 3 HOH B 32 186 186 HOH HOH . J 3 HOH B 33 187 187 HOH HOH . J 3 HOH B 34 188 188 HOH HOH . J 3 HOH B 35 189 189 HOH HOH . J 3 HOH B 36 190 190 HOH HOH . J 3 HOH B 37 191 191 HOH HOH . J 3 HOH B 38 192 192 HOH HOH . J 3 HOH B 39 193 193 HOH HOH . J 3 HOH B 40 194 194 HOH HOH . J 3 HOH B 41 195 195 HOH HOH . J 3 HOH B 42 196 196 HOH HOH . J 3 HOH B 43 197 197 HOH HOH . J 3 HOH B 44 198 198 HOH HOH . J 3 HOH B 45 199 199 HOH HOH . J 3 HOH B 46 200 200 HOH HOH . J 3 HOH B 47 201 201 HOH HOH . J 3 HOH B 48 202 202 HOH HOH . J 3 HOH B 49 203 203 HOH HOH . J 3 HOH B 50 204 204 HOH HOH . J 3 HOH B 51 205 205 HOH HOH . J 3 HOH B 52 206 76 HOH HOH . J 3 HOH B 53 207 77 HOH HOH . J 3 HOH B 54 208 78 HOH HOH . J 3 HOH B 55 209 82 HOH HOH . J 3 HOH B 56 210 85 HOH HOH . J 3 HOH B 57 211 86 HOH HOH . J 3 HOH B 58 212 88 HOH HOH . J 3 HOH B 59 213 89 HOH HOH . J 3 HOH B 60 214 92 HOH HOH . J 3 HOH B 61 215 94 HOH HOH . J 3 HOH B 62 216 97 HOH HOH . J 3 HOH B 63 217 98 HOH HOH . J 3 HOH B 64 218 103 HOH HOH . J 3 HOH B 65 219 110 HOH HOH . J 3 HOH B 66 220 111 HOH HOH . J 3 HOH B 67 221 112 HOH HOH . J 3 HOH B 68 222 139 HOH HOH . J 3 HOH B 69 223 140 HOH HOH . J 3 HOH B 70 224 142 HOH HOH . J 3 HOH B 71 225 143 HOH HOH . J 3 HOH B 72 226 144 HOH HOH . J 3 HOH B 73 227 145 HOH HOH . J 3 HOH B 74 228 146 HOH HOH . J 3 HOH B 75 229 147 HOH HOH . J 3 HOH B 76 230 230 HOH HOH . J 3 HOH B 77 231 231 HOH HOH . J 3 HOH B 78 232 232 HOH HOH . K 3 HOH C 1 27 27 HOH HOH . K 3 HOH C 2 28 28 HOH HOH . K 3 HOH C 3 30 30 HOH HOH . K 3 HOH C 4 40 40 HOH HOH . K 3 HOH C 5 169 50 HOH HOH . K 3 HOH C 6 170 52 HOH HOH . K 3 HOH C 7 171 53 HOH HOH . K 3 HOH C 8 172 57 HOH HOH . K 3 HOH C 9 173 65 HOH HOH . K 3 HOH C 10 174 66 HOH HOH . K 3 HOH C 11 175 69 HOH HOH . K 3 HOH C 12 176 70 HOH HOH . K 3 HOH C 13 177 71 HOH HOH . K 3 HOH C 14 178 79 HOH HOH . K 3 HOH C 15 179 80 HOH HOH . K 3 HOH C 16 180 83 HOH HOH . K 3 HOH C 17 181 84 HOH HOH . K 3 HOH C 18 182 90 HOH HOH . K 3 HOH C 19 183 95 HOH HOH . K 3 HOH C 20 184 100 HOH HOH . K 3 HOH C 21 185 102 HOH HOH . K 3 HOH C 22 186 107 HOH HOH . K 3 HOH C 23 187 121 HOH HOH . K 3 HOH C 24 188 122 HOH HOH . K 3 HOH C 25 189 123 HOH HOH . K 3 HOH C 26 190 124 HOH HOH . K 3 HOH C 27 191 134 HOH HOH . K 3 HOH C 28 192 135 HOH HOH . K 3 HOH C 29 193 137 HOH HOH . K 3 HOH C 30 194 141 HOH HOH . K 3 HOH C 31 195 149 HOH HOH . K 3 HOH C 32 196 150 HOH HOH . K 3 HOH C 33 197 151 HOH HOH . K 3 HOH C 34 198 152 HOH HOH . K 3 HOH C 35 199 153 HOH HOH . K 3 HOH C 36 200 157 HOH HOH . K 3 HOH C 37 201 158 HOH HOH . K 3 HOH C 38 202 159 HOH HOH . K 3 HOH C 39 203 160 HOH HOH . K 3 HOH C 40 204 161 HOH HOH . K 3 HOH C 41 205 162 HOH HOH . K 3 HOH C 42 206 206 HOH HOH . K 3 HOH C 43 207 207 HOH HOH . K 3 HOH C 44 208 208 HOH HOH . K 3 HOH C 45 209 209 HOH HOH . K 3 HOH C 46 210 210 HOH HOH . K 3 HOH C 47 211 211 HOH HOH . K 3 HOH C 48 212 212 HOH HOH . K 3 HOH C 49 213 213 HOH HOH . K 3 HOH C 50 214 214 HOH HOH . K 3 HOH C 51 215 215 HOH HOH . K 3 HOH C 52 216 163 HOH HOH . K 3 HOH C 53 217 164 HOH HOH . L 3 HOH D 1 11 11 HOH HOH . L 3 HOH D 2 17 17 HOH HOH . L 3 HOH D 3 22 22 HOH HOH . L 3 HOH D 4 23 23 HOH HOH . L 3 HOH D 5 32 32 HOH HOH . L 3 HOH D 6 37 37 HOH HOH . L 3 HOH D 7 39 39 HOH HOH . L 3 HOH D 8 169 169 HOH HOH . L 3 HOH D 9 170 43 HOH HOH . L 3 HOH D 10 171 51 HOH HOH . L 3 HOH D 11 172 59 HOH HOH . L 3 HOH D 12 173 73 HOH HOH . L 3 HOH D 13 174 74 HOH HOH . L 3 HOH D 14 175 81 HOH HOH . L 3 HOH D 15 176 91 HOH HOH . L 3 HOH D 16 177 101 HOH HOH . L 3 HOH D 17 178 106 HOH HOH . L 3 HOH D 18 179 108 HOH HOH . L 3 HOH D 19 180 109 HOH HOH . L 3 HOH D 20 181 115 HOH HOH . L 3 HOH D 21 182 120 HOH HOH . L 3 HOH D 22 183 126 HOH HOH . L 3 HOH D 23 184 129 HOH HOH . L 3 HOH D 24 185 131 HOH HOH . L 3 HOH D 25 186 133 HOH HOH . L 3 HOH D 26 187 138 HOH HOH . L 3 HOH D 27 188 148 HOH HOH . L 3 HOH D 28 189 154 HOH HOH . L 3 HOH D 29 190 165 HOH HOH . L 3 HOH D 30 191 166 HOH HOH . L 3 HOH D 31 192 167 HOH HOH . L 3 HOH D 32 193 168 HOH HOH . L 3 HOH D 33 216 216 HOH HOH . L 3 HOH D 34 217 217 HOH HOH . L 3 HOH D 35 218 218 HOH HOH . L 3 HOH D 36 220 220 HOH HOH . L 3 HOH D 37 221 221 HOH HOH . L 3 HOH D 38 222 222 HOH HOH . L 3 HOH D 39 224 224 HOH HOH . L 3 HOH D 40 225 225 HOH HOH . L 3 HOH D 41 226 226 HOH HOH . L 3 HOH D 42 227 227 HOH HOH . L 3 HOH D 43 228 228 HOH HOH . L 3 HOH D 44 229 229 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAU 08J . . . E 2 76.14 -4.326 13.82 1 30.21 ? CAU 08J 1 A 1 HETATM 2 C CAK 08J . . . E 2 76.487 -4.518 15.163 1 25.39 ? CAK 08J 1 A 1 HETATM 3 C CAP 08J . . . E 2 77.562 -3.79 15.708 1 25.28 ? CAP 08J 1 A 1 HETATM 4 CL CLAC 08J . . . E 2 78.061 -3.935 17.362 1 31.65 ? CLAC 08J 1 A 1 HETATM 5 C CAH 08J . . . E 2 78.286 -2.875 14.912 1 17.3 ? CAH 08J 1 A 1 HETATM 6 C CAI 08J . . . E 2 77.971 -2.694 13.571 1 14.83 ? CAI 08J 1 A 1 HETATM 7 C CAV 08J . . . E 2 76.891 -3.393 13.029 1 14.01 ? CAV 08J 1 A 1 HETATM 8 N NAW 08J . . . E 2 76.71 -3.132 11.722 1 26.56 ? NAW 08J 1 A 1 HETATM 9 C CAR 08J . . . E 2 76.84 -1.965 11.04 1 29.35 ? CAR 08J 1 A 1 HETATM 10 C CAA 08J . . . E 2 77.201 -0.512 11.535 1 18.01 ? CAA 08J 1 A 1 HETATM 11 N NAN 08J . . . E 2 76.6 -2.225 9.758 1 21.34 ? NAN 08J 1 A 1 HETATM 12 C CAJ 08J . . . E 2 76.367 -3.53 9.616 1 18.56 ? CAJ 08J 1 A 1 HETATM 13 C CAS 08J . . . E 2 76.435 -4.082 10.819 1 23.94 ? CAS 08J 1 A 1 HETATM 14 C CAL 08J . . . E 2 76.194 -5.556 11.14 1 27.06 ? CAL 08J 1 A 1 HETATM 15 N NAM 08J . . . E 2 75.079 -5.607 12.081 1 19.74 ? NAM 08J 1 A 1 HETATM 16 C CAO 08J . . . E 2 75.046 -5.114 13.335 1 24.95 ? CAO 08J 1 A 1 HETATM 17 C CAT 08J . . . E 2 73.784 -5.29 13.972 1 37.53 ? CAT 08J 1 A 1 HETATM 18 C CAG 08J . . . E 2 73.187 -4.208 14.623 1 29.35 ? CAG 08J 1 A 1 HETATM 19 C CAE 08J . . . E 2 71.935 -4.322 15.242 1 37.12 ? CAE 08J 1 A 1 HETATM 20 C CAD 08J . . . E 2 71.231 -5.53 15.209 1 41.39 ? CAD 08J 1 A 1 HETATM 21 C CAF 08J . . . E 2 71.794 -6.624 14.552 1 35.15 ? CAF 08J 1 A 1 HETATM 22 C CAQ 08J . . . E 2 73.052 -6.507 13.932 1 27.95 ? CAQ 08J 1 A 1 HETATM 23 F FAB 08J . . . E 2 73.51 -7.613 13.315 1 34.53 ? FAB 08J 1 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 23 #