data_3U5N # _model_server_result.job_id GENzMOK939HGSL6Msz3-Mg _model_server_result.datetime_utc '2025-02-05 11:53:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3u5n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1}' # _entry.id 3U5N # _exptl.entry_id 3U5N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3U5N _cell.length_a 97.586 _cell.length_b 113.737 _cell.length_c 39.861 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3U5N _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,E,F,I 1 1 C,D,G,H,J,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 B C ARG 8 C ARG 8 1_555 B N M3L 9 C M3L 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 B C M3L 9 C M3L 9 1_555 B N SER 10 C SER 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale3 D C ARG 8 D ARG 8 1_555 D N M3L 9 D M3L 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale4 D C M3L 9 D M3L 9 1_555 D N SER 10 D SER 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale5 D C GLY 13 D GLY 13 1_555 D N ALY 14 D ALY 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale6 D C ALY 14 D ALY 14 1_555 D N ALA 15 D ALA 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? metalc ? metalc1 E ZN ZN . A ZN 1 1_555 A SG CYS 10 A CYS 890 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc2 E ZN ZN . A ZN 1 1_555 A SG CYS 13 A CYS 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.332 ? metalc ? metalc3 E ZN ZN . A ZN 1 1_555 A ND1 HIS 30 A HIS 910 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.255 ? metalc ? metalc4 E ZN ZN . A ZN 1 1_555 A SG CYS 33 A CYS 913 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc5 F ZN ZN . A ZN 2 1_555 A SG CYS 22 A CYS 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc6 F ZN ZN . A ZN 2 1_555 A SG CYS 25 A CYS 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc7 F ZN ZN . A ZN 2 1_555 A SG CYS 48 A CYS 928 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.401 ? metalc ? metalc8 F ZN ZN . A ZN 2 1_555 A SG CYS 51 A CYS 931 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.458 ? metalc ? metalc9 G ZN ZN . B ZN 1 1_555 C SG CYS 10 B CYS 890 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.374 ? metalc ? metalc10 G ZN ZN . B ZN 1 1_555 C SG CYS 13 B CYS 893 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.518 ? metalc ? metalc11 G ZN ZN . B ZN 1 1_555 C ND1 HIS 30 B HIS 910 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc12 G ZN ZN . B ZN 1 1_555 C SG CYS 33 B CYS 913 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? metalc ? metalc13 H ZN ZN . B ZN 2 1_555 C SG CYS 22 B CYS 902 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? metalc ? metalc14 H ZN ZN . B ZN 2 1_555 C SG CYS 25 B CYS 905 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc15 H ZN ZN . B ZN 2 1_555 C SG CYS 48 B CYS 928 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.479 ? metalc ? metalc16 H ZN ZN . B ZN 2 1_555 C SG CYS 51 B CYS 931 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3U5N _atom_sites.fract_transf_matrix[1][1] 0.010247 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008792 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.025087 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 ZN A 1 1 1 ZN ZN . F 3 ZN A 1 2 2 ZN ZN . G 3 ZN B 1 1 1 ZN ZN . H 3 ZN B 1 2 2 ZN ZN . I 4 HOH A 1 4 4 HOH HOH . I 4 HOH A 2 5 5 HOH HOH . I 4 HOH A 3 6 6 HOH HOH . I 4 HOH A 4 7 7 HOH HOH . I 4 HOH A 5 8 8 HOH HOH . I 4 HOH A 6 9 9 HOH HOH . I 4 HOH A 7 10 10 HOH HOH . I 4 HOH A 8 11 11 HOH HOH . I 4 HOH A 9 12 12 HOH HOH . I 4 HOH A 10 13 13 HOH HOH . I 4 HOH A 11 14 14 HOH HOH . I 4 HOH A 12 15 15 HOH HOH . I 4 HOH A 13 16 16 HOH HOH . I 4 HOH A 14 20 20 HOH HOH . I 4 HOH A 15 22 22 HOH HOH . I 4 HOH A 16 23 23 HOH HOH . I 4 HOH A 17 25 25 HOH HOH . I 4 HOH A 18 26 26 HOH HOH . I 4 HOH A 19 27 27 HOH HOH . I 4 HOH A 20 28 28 HOH HOH . I 4 HOH A 21 29 29 HOH HOH . I 4 HOH A 22 30 30 HOH HOH . I 4 HOH A 23 31 31 HOH HOH . I 4 HOH A 24 33 33 HOH HOH . I 4 HOH A 25 35 35 HOH HOH . I 4 HOH A 26 36 36 HOH HOH . I 4 HOH A 27 40 40 HOH HOH . I 4 HOH A 28 41 41 HOH HOH . I 4 HOH A 29 42 42 HOH HOH . I 4 HOH A 30 43 43 HOH HOH . I 4 HOH A 31 45 45 HOH HOH . I 4 HOH A 32 46 46 HOH HOH . I 4 HOH A 33 48 48 HOH HOH . I 4 HOH A 34 49 49 HOH HOH . I 4 HOH A 35 53 53 HOH HOH . I 4 HOH A 36 55 55 HOH HOH . I 4 HOH A 37 56 56 HOH HOH . I 4 HOH A 38 62 62 HOH HOH . I 4 HOH A 39 63 63 HOH HOH . I 4 HOH A 40 64 64 HOH HOH . I 4 HOH A 41 65 65 HOH HOH . I 4 HOH A 42 66 66 HOH HOH . I 4 HOH A 43 67 67 HOH HOH . I 4 HOH A 44 68 68 HOH HOH . I 4 HOH A 45 69 69 HOH HOH . I 4 HOH A 46 70 70 HOH HOH . I 4 HOH A 47 73 73 HOH HOH . I 4 HOH A 48 74 74 HOH HOH . I 4 HOH A 49 75 75 HOH HOH . I 4 HOH A 50 76 76 HOH HOH . I 4 HOH A 51 79 79 HOH HOH . I 4 HOH A 52 80 80 HOH HOH . I 4 HOH A 53 81 81 HOH HOH . I 4 HOH A 54 83 83 HOH HOH . I 4 HOH A 55 84 84 HOH HOH . I 4 HOH A 56 85 85 HOH HOH . I 4 HOH A 57 86 86 HOH HOH . I 4 HOH A 58 87 87 HOH HOH . I 4 HOH A 59 88 88 HOH HOH . I 4 HOH A 60 89 89 HOH HOH . I 4 HOH A 61 93 93 HOH HOH . I 4 HOH A 62 96 96 HOH HOH . I 4 HOH A 63 98 98 HOH HOH . I 4 HOH A 64 99 99 HOH HOH . I 4 HOH A 65 100 100 HOH HOH . I 4 HOH A 66 104 104 HOH HOH . I 4 HOH A 67 105 105 HOH HOH . I 4 HOH A 68 107 107 HOH HOH . I 4 HOH A 69 108 108 HOH HOH . I 4 HOH A 70 110 110 HOH HOH . I 4 HOH A 71 112 112 HOH HOH . I 4 HOH A 72 114 114 HOH HOH . I 4 HOH A 73 115 115 HOH HOH . I 4 HOH A 74 118 118 HOH HOH . I 4 HOH A 75 119 119 HOH HOH . I 4 HOH A 76 120 120 HOH HOH . I 4 HOH A 77 122 122 HOH HOH . I 4 HOH A 78 125 125 HOH HOH . I 4 HOH A 79 126 126 HOH HOH . I 4 HOH A 80 128 128 HOH HOH . I 4 HOH A 81 129 129 HOH HOH . I 4 HOH A 82 130 130 HOH HOH . I 4 HOH A 83 132 132 HOH HOH . I 4 HOH A 84 133 133 HOH HOH . I 4 HOH A 85 134 134 HOH HOH . I 4 HOH A 86 136 136 HOH HOH . I 4 HOH A 87 137 137 HOH HOH . I 4 HOH A 88 138 138 HOH HOH . I 4 HOH A 89 140 140 HOH HOH . I 4 HOH A 90 141 141 HOH HOH . I 4 HOH A 91 142 142 HOH HOH . I 4 HOH A 92 144 144 HOH HOH . I 4 HOH A 93 145 145 HOH HOH . I 4 HOH A 94 147 147 HOH HOH . I 4 HOH A 95 149 149 HOH HOH . I 4 HOH A 96 153 153 HOH HOH . I 4 HOH A 97 154 154 HOH HOH . I 4 HOH A 98 155 155 HOH HOH . I 4 HOH A 99 161 161 HOH HOH . I 4 HOH A 100 162 162 HOH HOH . I 4 HOH A 101 163 163 HOH HOH . I 4 HOH A 102 164 164 HOH HOH . I 4 HOH A 103 165 165 HOH HOH . I 4 HOH A 104 167 167 HOH HOH . I 4 HOH A 105 168 168 HOH HOH . I 4 HOH A 106 169 169 HOH HOH . I 4 HOH A 107 171 171 HOH HOH . I 4 HOH A 108 172 172 HOH HOH . I 4 HOH A 109 178 178 HOH HOH . I 4 HOH A 110 179 179 HOH HOH . I 4 HOH A 111 180 180 HOH HOH . I 4 HOH A 112 189 189 HOH HOH . I 4 HOH A 113 192 192 HOH HOH . I 4 HOH A 114 193 193 HOH HOH . I 4 HOH A 115 195 195 HOH HOH . I 4 HOH A 116 198 198 HOH HOH . I 4 HOH A 117 199 199 HOH HOH . I 4 HOH A 118 210 210 HOH HOH . I 4 HOH A 119 212 212 HOH HOH . I 4 HOH A 120 213 213 HOH HOH . I 4 HOH A 121 1088 1 HOH HOH . J 4 HOH B 1 3 3 HOH HOH . J 4 HOH B 2 17 17 HOH HOH . J 4 HOH B 3 18 18 HOH HOH . J 4 HOH B 4 19 19 HOH HOH . J 4 HOH B 5 21 21 HOH HOH . J 4 HOH B 6 24 24 HOH HOH . J 4 HOH B 7 32 32 HOH HOH . J 4 HOH B 8 34 34 HOH HOH . J 4 HOH B 9 37 37 HOH HOH . J 4 HOH B 10 38 38 HOH HOH . J 4 HOH B 11 39 39 HOH HOH . J 4 HOH B 12 44 44 HOH HOH . J 4 HOH B 13 47 47 HOH HOH . J 4 HOH B 14 50 50 HOH HOH . J 4 HOH B 15 51 51 HOH HOH . J 4 HOH B 16 52 52 HOH HOH . J 4 HOH B 17 54 54 HOH HOH . J 4 HOH B 18 57 57 HOH HOH . J 4 HOH B 19 58 58 HOH HOH . J 4 HOH B 20 59 59 HOH HOH . J 4 HOH B 21 60 60 HOH HOH . J 4 HOH B 22 61 61 HOH HOH . J 4 HOH B 23 71 71 HOH HOH . J 4 HOH B 24 72 72 HOH HOH . J 4 HOH B 25 77 77 HOH HOH . J 4 HOH B 26 78 78 HOH HOH . J 4 HOH B 27 82 82 HOH HOH . J 4 HOH B 28 90 90 HOH HOH . J 4 HOH B 29 91 91 HOH HOH . J 4 HOH B 30 94 94 HOH HOH . J 4 HOH B 31 95 95 HOH HOH . J 4 HOH B 32 97 97 HOH HOH . J 4 HOH B 33 101 101 HOH HOH . J 4 HOH B 34 102 102 HOH HOH . J 4 HOH B 35 103 103 HOH HOH . J 4 HOH B 36 106 106 HOH HOH . J 4 HOH B 37 109 109 HOH HOH . J 4 HOH B 38 113 113 HOH HOH . J 4 HOH B 39 116 116 HOH HOH . J 4 HOH B 40 117 117 HOH HOH . J 4 HOH B 41 121 121 HOH HOH . J 4 HOH B 42 123 123 HOH HOH . J 4 HOH B 43 124 124 HOH HOH . J 4 HOH B 44 127 127 HOH HOH . J 4 HOH B 45 135 135 HOH HOH . J 4 HOH B 46 139 139 HOH HOH . J 4 HOH B 47 143 143 HOH HOH . J 4 HOH B 48 146 146 HOH HOH . J 4 HOH B 49 148 148 HOH HOH . J 4 HOH B 50 150 150 HOH HOH . J 4 HOH B 51 151 151 HOH HOH . J 4 HOH B 52 152 152 HOH HOH . J 4 HOH B 53 156 156 HOH HOH . J 4 HOH B 54 157 157 HOH HOH . J 4 HOH B 55 158 158 HOH HOH . J 4 HOH B 56 159 159 HOH HOH . J 4 HOH B 57 160 160 HOH HOH . J 4 HOH B 58 166 166 HOH HOH . J 4 HOH B 59 173 173 HOH HOH . J 4 HOH B 60 174 174 HOH HOH . J 4 HOH B 61 175 175 HOH HOH . J 4 HOH B 62 176 176 HOH HOH . J 4 HOH B 63 177 177 HOH HOH . J 4 HOH B 64 181 181 HOH HOH . J 4 HOH B 65 182 182 HOH HOH . J 4 HOH B 66 184 184 HOH HOH . J 4 HOH B 67 185 185 HOH HOH . J 4 HOH B 68 186 186 HOH HOH . J 4 HOH B 69 187 187 HOH HOH . J 4 HOH B 70 188 188 HOH HOH . J 4 HOH B 71 190 190 HOH HOH . J 4 HOH B 72 191 191 HOH HOH . J 4 HOH B 73 194 194 HOH HOH . J 4 HOH B 74 196 196 HOH HOH . J 4 HOH B 75 197 197 HOH HOH . J 4 HOH B 76 200 200 HOH HOH . J 4 HOH B 77 201 201 HOH HOH . J 4 HOH B 78 202 202 HOH HOH . J 4 HOH B 79 203 203 HOH HOH . J 4 HOH B 80 204 204 HOH HOH . J 4 HOH B 81 205 205 HOH HOH . J 4 HOH B 82 206 206 HOH HOH . J 4 HOH B 83 208 208 HOH HOH . J 4 HOH B 84 209 209 HOH HOH . J 4 HOH B 85 211 211 HOH HOH . J 4 HOH B 86 1088 2 HOH HOH . K 4 HOH D 1 111 111 HOH HOH . K 4 HOH D 2 131 131 HOH HOH . K 4 HOH D 3 170 170 HOH HOH . K 4 HOH D 4 207 207 HOH HOH . K 4 HOH D 5 214 214 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id G _atom_site.label_entity_id 3 _atom_site.Cartn_x -21.998 _atom_site.Cartn_y -38.864 _atom_site.Cartn_z -9.553 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 37.56 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 1 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 56 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 250 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #