data_3U67
#
_model_server_result.job_id            w7sJQN7Z4uF6LqZwNRW4uQ 
_model_server_result.datetime_utc      '2024-11-22 18:53:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          3u67 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":217}' 
#
_entry.id    3U67 
#
_exptl.entry_id    3U67 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            3U67 
_cell.length_a            121.865 
_cell.length_b            42.991 
_cell.length_c            51.253 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 3U67 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        18 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
PISA dimeric 2 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G 1 1 
A,B,C,D,E,F,G 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 42.991 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 D N N 
? 4 E N N 
? 4 F N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASN 54 A ASN 36 1_555 C MG MG . A MG 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.003 ? 
metalc ? metalc2 B O1A ADP . A ADP 214 1_555 C MG MG . A MG 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.073 ? 
metalc ? metalc3 B O1B ADP . A ADP 214 1_555 C MG MG . A MG 215 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.081 ? 
metalc ? metalc4 C MG MG . A MG 215 1_555 G O HOH . A HOH 356 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? 
metalc ? metalc5 C MG MG . A MG 215 1_555 G O HOH . A HOH 357 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? 
metalc ? metalc6 C MG MG . A MG 215 1_555 G O HOH . A HOH 358 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 127 n n 
C1 C2 EDO sing 128 n n 
C1 H11 EDO sing 129 n n 
C1 H12 EDO sing 130 n n 
O1 HO1 EDO sing 131 n n 
C2 O2 EDO sing 132 n n 
C2 H21 EDO sing 133 n n 
C2 H22 EDO sing 134 n n 
O2 HO2 EDO sing 135 n n 
#
_atom_sites.entry_id                     3U67 
_atom_sites.fract_transf_matrix[1][1]    0.008206 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.023261 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.019511 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ADP A 1 214 1 ADP ADP . 
C 3 MG A 1 215 1 MG MG . 
D 4 EDO A 1 216 1 EDO EDO . 
E 4 EDO A 1 217 1 EDO EDO . 
F 4 EDO A 1 218 1 EDO EDO . 
G 5 HOH A 1 219 1 HOH HOH . 
G 5 HOH A 2 220 2 HOH HOH . 
G 5 HOH A 3 221 3 HOH HOH . 
G 5 HOH A 4 222 4 HOH HOH . 
G 5 HOH A 5 223 5 HOH HOH . 
G 5 HOH A 6 224 6 HOH HOH . 
G 5 HOH A 7 225 7 HOH HOH . 
G 5 HOH A 8 226 8 HOH HOH . 
G 5 HOH A 9 227 9 HOH HOH . 
G 5 HOH A 10 228 10 HOH HOH . 
G 5 HOH A 11 229 11 HOH HOH . 
G 5 HOH A 12 230 12 HOH HOH . 
G 5 HOH A 13 231 13 HOH HOH . 
G 5 HOH A 14 232 14 HOH HOH . 
G 5 HOH A 15 233 15 HOH HOH . 
G 5 HOH A 16 234 16 HOH HOH . 
G 5 HOH A 17 235 17 HOH HOH . 
G 5 HOH A 18 236 18 HOH HOH . 
G 5 HOH A 19 237 19 HOH HOH . 
G 5 HOH A 20 238 20 HOH HOH . 
G 5 HOH A 21 239 21 HOH HOH . 
G 5 HOH A 22 240 22 HOH HOH . 
G 5 HOH A 23 241 23 HOH HOH . 
G 5 HOH A 24 242 24 HOH HOH . 
G 5 HOH A 25 243 25 HOH HOH . 
G 5 HOH A 26 244 26 HOH HOH . 
G 5 HOH A 27 245 27 HOH HOH . 
G 5 HOH A 28 246 28 HOH HOH . 
G 5 HOH A 29 247 29 HOH HOH . 
G 5 HOH A 30 248 30 HOH HOH . 
G 5 HOH A 31 249 31 HOH HOH . 
G 5 HOH A 32 250 32 HOH HOH . 
G 5 HOH A 33 251 33 HOH HOH . 
G 5 HOH A 34 252 34 HOH HOH . 
G 5 HOH A 35 253 35 HOH HOH . 
G 5 HOH A 36 254 36 HOH HOH . 
G 5 HOH A 37 255 37 HOH HOH . 
G 5 HOH A 38 256 38 HOH HOH . 
G 5 HOH A 39 257 39 HOH HOH . 
G 5 HOH A 40 258 40 HOH HOH . 
G 5 HOH A 41 259 41 HOH HOH . 
G 5 HOH A 42 260 42 HOH HOH . 
G 5 HOH A 43 261 43 HOH HOH . 
G 5 HOH A 44 262 44 HOH HOH . 
G 5 HOH A 45 263 45 HOH HOH . 
G 5 HOH A 46 264 46 HOH HOH . 
G 5 HOH A 47 265 47 HOH HOH . 
G 5 HOH A 48 266 48 HOH HOH . 
G 5 HOH A 49 267 49 HOH HOH . 
G 5 HOH A 50 268 50 HOH HOH . 
G 5 HOH A 51 269 51 HOH HOH . 
G 5 HOH A 52 270 52 HOH HOH . 
G 5 HOH A 53 271 53 HOH HOH . 
G 5 HOH A 54 272 54 HOH HOH . 
G 5 HOH A 55 273 55 HOH HOH . 
G 5 HOH A 56 274 56 HOH HOH . 
G 5 HOH A 57 275 57 HOH HOH . 
G 5 HOH A 58 276 58 HOH HOH . 
G 5 HOH A 59 277 59 HOH HOH . 
G 5 HOH A 60 278 60 HOH HOH . 
G 5 HOH A 61 279 61 HOH HOH . 
G 5 HOH A 62 280 62 HOH HOH . 
G 5 HOH A 63 281 63 HOH HOH . 
G 5 HOH A 64 282 64 HOH HOH . 
G 5 HOH A 65 283 65 HOH HOH . 
G 5 HOH A 66 284 66 HOH HOH . 
G 5 HOH A 67 285 67 HOH HOH . 
G 5 HOH A 68 286 68 HOH HOH . 
G 5 HOH A 69 287 69 HOH HOH . 
G 5 HOH A 70 288 70 HOH HOH . 
G 5 HOH A 71 289 71 HOH HOH . 
G 5 HOH A 72 290 72 HOH HOH . 
G 5 HOH A 73 291 73 HOH HOH . 
G 5 HOH A 74 292 74 HOH HOH . 
G 5 HOH A 75 293 75 HOH HOH . 
G 5 HOH A 76 294 76 HOH HOH . 
G 5 HOH A 77 295 77 HOH HOH . 
G 5 HOH A 78 296 78 HOH HOH . 
G 5 HOH A 79 297 79 HOH HOH . 
G 5 HOH A 80 298 80 HOH HOH . 
G 5 HOH A 81 299 81 HOH HOH . 
G 5 HOH A 82 300 82 HOH HOH . 
G 5 HOH A 83 301 83 HOH HOH . 
G 5 HOH A 84 302 84 HOH HOH . 
G 5 HOH A 85 303 85 HOH HOH . 
G 5 HOH A 86 304 86 HOH HOH . 
G 5 HOH A 87 305 87 HOH HOH . 
G 5 HOH A 88 306 88 HOH HOH . 
G 5 HOH A 89 307 89 HOH HOH . 
G 5 HOH A 90 308 90 HOH HOH . 
G 5 HOH A 91 309 91 HOH HOH . 
G 5 HOH A 92 310 92 HOH HOH . 
G 5 HOH A 93 311 93 HOH HOH . 
G 5 HOH A 94 312 94 HOH HOH . 
G 5 HOH A 95 313 95 HOH HOH . 
G 5 HOH A 96 314 96 HOH HOH . 
G 5 HOH A 97 315 97 HOH HOH . 
G 5 HOH A 98 316 98 HOH HOH . 
G 5 HOH A 99 317 99 HOH HOH . 
G 5 HOH A 100 318 100 HOH HOH . 
G 5 HOH A 101 319 101 HOH HOH . 
G 5 HOH A 102 320 102 HOH HOH . 
G 5 HOH A 103 321 103 HOH HOH . 
G 5 HOH A 104 322 104 HOH HOH . 
G 5 HOH A 105 323 105 HOH HOH . 
G 5 HOH A 106 324 106 HOH HOH . 
G 5 HOH A 107 325 107 HOH HOH . 
G 5 HOH A 108 326 108 HOH HOH . 
G 5 HOH A 109 327 109 HOH HOH . 
G 5 HOH A 110 328 110 HOH HOH . 
G 5 HOH A 111 329 111 HOH HOH . 
G 5 HOH A 112 330 112 HOH HOH . 
G 5 HOH A 113 331 113 HOH HOH . 
G 5 HOH A 114 332 114 HOH HOH . 
G 5 HOH A 115 333 115 HOH HOH . 
G 5 HOH A 116 334 116 HOH HOH . 
G 5 HOH A 117 335 117 HOH HOH . 
G 5 HOH A 118 336 118 HOH HOH . 
G 5 HOH A 119 337 119 HOH HOH . 
G 5 HOH A 120 338 120 HOH HOH . 
G 5 HOH A 121 339 121 HOH HOH . 
G 5 HOH A 122 340 122 HOH HOH . 
G 5 HOH A 123 341 123 HOH HOH . 
G 5 HOH A 124 342 124 HOH HOH . 
G 5 HOH A 125 343 125 HOH HOH . 
G 5 HOH A 126 344 126 HOH HOH . 
G 5 HOH A 127 345 127 HOH HOH . 
G 5 HOH A 128 346 128 HOH HOH . 
G 5 HOH A 129 347 129 HOH HOH . 
G 5 HOH A 130 348 130 HOH HOH . 
G 5 HOH A 131 349 131 HOH HOH . 
G 5 HOH A 132 350 132 HOH HOH . 
G 5 HOH A 133 351 133 HOH HOH . 
G 5 HOH A 134 352 134 HOH HOH . 
G 5 HOH A 135 353 135 HOH HOH . 
G 5 HOH A 136 354 136 HOH HOH . 
G 5 HOH A 137 355 137 HOH HOH . 
G 5 HOH A 138 356 138 HOH HOH . 
G 5 HOH A 139 357 139 HOH HOH . 
G 5 HOH A 140 358 140 HOH HOH . 
G 5 HOH A 141 359 141 HOH HOH . 
G 5 HOH A 142 360 142 HOH HOH . 
G 5 HOH A 143 361 143 HOH HOH . 
G 5 HOH A 144 362 144 HOH HOH . 
G 5 HOH A 145 363 145 HOH HOH . 
G 5 HOH A 146 364 146 HOH HOH . 
G 5 HOH A 147 365 147 HOH HOH . 
G 5 HOH A 148 366 148 HOH HOH . 
G 5 HOH A 149 367 149 HOH HOH . 
G 5 HOH A 150 368 150 HOH HOH . 
G 5 HOH A 151 369 151 HOH HOH . 
G 5 HOH A 152 370 152 HOH HOH . 
G 5 HOH A 153 371 153 HOH HOH . 
G 5 HOH A 154 372 154 HOH HOH . 
G 5 HOH A 155 373 155 HOH HOH . 
G 5 HOH A 156 374 156 HOH HOH . 
G 5 HOH A 157 375 157 HOH HOH . 
G 5 HOH A 158 376 158 HOH HOH . 
G 5 HOH A 159 377 159 HOH HOH . 
G 5 HOH A 160 378 160 HOH HOH . 
G 5 HOH A 161 379 161 HOH HOH . 
G 5 HOH A 162 380 162 HOH HOH . 
G 5 HOH A 163 381 163 HOH HOH . 
G 5 HOH A 164 382 164 HOH HOH . 
G 5 HOH A 165 383 165 HOH HOH . 
G 5 HOH A 166 384 166 HOH HOH . 
G 5 HOH A 167 385 167 HOH HOH . 
G 5 HOH A 168 386 168 HOH HOH . 
G 5 HOH A 169 387 169 HOH HOH . 
G 5 HOH A 170 388 170 HOH HOH . 
G 5 HOH A 171 389 171 HOH HOH . 
G 5 HOH A 172 390 172 HOH HOH . 
G 5 HOH A 173 391 173 HOH HOH . 
G 5 HOH A 174 392 174 HOH HOH . 
G 5 HOH A 175 393 175 HOH HOH . 
G 5 HOH A 176 394 176 HOH HOH . 
G 5 HOH A 177 395 177 HOH HOH . 
G 5 HOH A 178 396 178 HOH HOH . 
G 5 HOH A 179 397 179 HOH HOH . 
G 5 HOH A 180 398 180 HOH HOH . 
G 5 HOH A 181 399 181 HOH HOH . 
G 5 HOH A 182 400 182 HOH HOH . 
G 5 HOH A 183 401 183 HOH HOH . 
G 5 HOH A 184 402 184 HOH HOH . 
G 5 HOH A 185 403 185 HOH HOH . 
G 5 HOH A 186 404 186 HOH HOH . 
G 5 HOH A 187 405 187 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . E 4 -20.163 -8.825 -25.619 1 51.59 ? C1 EDO 217 A 1 
HETATM 2 O O1 EDO . . . E 4 -21.13 -8.149 -24.799 1 51.98 ? O1 EDO 217 A 1 
HETATM 3 C C2 EDO . . . E 4 -18.931 -9.223 -24.801 1 47.22 ? C2 EDO 217 A 1 
HETATM 4 O O2 EDO . . . E 4 -19.28 -10.233 -23.841 1 58.33 ? O2 EDO 217 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    15 
_model_server_stats.query_time_ms           295 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           4 
#