data_3U6B # _model_server_result.job_id vgvu7kZlI9LxLPKnnt6tsQ _model_server_result.datetime_utc '2024-10-12 12:25:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3u6b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 3U6B # _exptl.entry_id 3U6B _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3U6B _cell.length_a 97.246 _cell.length_b 100.376 _cell.length_c 156.483 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3U6B _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,F,I 1 1 B,C,G,H,J,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C SER 1 C SER 1 1_555 C N BB9 2 C BB9 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.36 sing covale ? covale2 C C SER 1 C SER 1 1_555 C SG BB9 2 C BB9 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.77 sing covale ? covale3 C CA SER 1 C SER 1 1_555 C C BB9 10 C BB9 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.415 sing covale ? covale4 C CB SER 1 C SER 1 1_555 C CB MH6 11 C MH6 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.399 sing covale ? covale5 C C BB9 2 C BB9 2 1_555 C N MEN 3 C MEN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.353 sing covale ? covale6 C C MEN 3 C MEN 3 1_555 C SG BB6 4 C BB6 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.745 sing covale ? covale7 C C MEN 3 C MEN 3 1_555 C N BB6 4 C BB6 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 sing covale ? covale8 C C BB6 4 C BB6 4 1_555 C N VAL 5 C VAL 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 sing covale ? covale9 C C VAL 5 C VAL 5 1_555 C SG BB7 6 C BB7 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.747 sing covale ? covale10 C C VAL 5 C VAL 5 1_555 C N BB7 6 C BB7 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 sing covale ? covale11 C C BB7 6 C BB7 6 1_555 C N GLY 7 C GLY 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.352 sing covale ? covale12 C C GLY 7 C GLY 7 1_555 C N BB8 8 C BB8 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 sing covale ? covale13 C C BB8 8 C BB8 8 1_555 C N BB9 9 C BB9 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.305 sing covale ? covale14 C C BB8 8 C BB8 8 1_555 C SG BB9 9 C BB9 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.761 sing covale ? covale15 C C BB9 9 C BB9 9 1_555 C N BB9 10 C BB9 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 sing covale ? covale16 C C BB9 9 C BB9 9 1_555 C SG BB9 10 C BB9 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.771 sing covale ? covale17 C C BB9 10 C BB9 10 1_555 C N MH6 11 C MH6 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 sing covale ? covale18 C C MH6 11 C MH6 11 1_555 C N 8BB 12 C 8BB 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.343 sing covale ? covale19 C C MH6 11 C MH6 11 1_555 C SG 8BB 12 C 8BB 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.762 sing covale ? covale20 D C SER 1 D SER 1 1_555 D N BB9 2 D BB9 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 sing covale ? covale21 D C SER 1 D SER 1 1_555 D SG BB9 2 D BB9 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.759 sing covale ? covale22 D CA SER 1 D SER 1 1_555 D C BB9 10 D BB9 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.42 sing covale ? covale23 D CB SER 1 D SER 1 1_555 D CB MH6 11 D MH6 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.393 sing covale ? covale24 D C BB9 2 D BB9 2 1_555 D N MEN 3 D MEN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 sing covale ? covale25 D C MEN 3 D MEN 3 1_555 D SG BB6 4 D BB6 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.743 sing covale ? covale26 D C MEN 3 D MEN 3 1_555 D N BB6 4 D BB6 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 sing covale ? covale27 D C BB6 4 D BB6 4 1_555 D N VAL 5 D VAL 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.346 sing covale ? covale28 D C VAL 5 D VAL 5 1_555 D SG BB7 6 D BB7 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.758 sing covale ? covale29 D C VAL 5 D VAL 5 1_555 D N BB7 6 D BB7 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 sing covale ? covale30 D C BB7 6 D BB7 6 1_555 D N GLY 7 D GLY 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.353 sing covale ? covale31 D C GLY 7 D GLY 7 1_555 D N BB8 8 D BB8 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 sing covale ? covale32 D C BB8 8 D BB8 8 1_555 D N BB9 9 D BB9 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 sing covale ? covale33 D C BB8 8 D BB8 8 1_555 D SG BB9 9 D BB9 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.769 sing covale ? covale34 D C BB9 9 D BB9 9 1_555 D N BB9 10 D BB9 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 sing covale ? covale35 D C BB9 9 D BB9 9 1_555 D SG BB9 10 D BB9 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.753 sing covale ? covale36 D C BB9 10 D BB9 10 1_555 D N MH6 11 D MH6 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 sing covale ? covale37 D C MH6 11 D MH6 11 1_555 D N 8BB 12 D 8BB 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 sing covale ? covale38 D C MH6 11 D MH6 11 1_555 D SG 8BB 12 D 8BB 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 sing metalc ? metalc1 A OG1 THR 26 A THR 25 1_555 E MG MG . A MG 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc2 E MG MG . A MG 401 1_555 F O2B GDP . A GDP 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.968 ? metalc ? metalc3 E MG MG . A MG 401 1_555 I O HOH . A HOH 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.005 ? metalc ? metalc4 E MG MG . A MG 401 1_555 I O HOH . A HOH 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.971 ? metalc ? metalc5 E MG MG . A MG 401 1_555 I O HOH . A HOH 517 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc6 E MG MG . A MG 401 1_555 I O HOH . A HOH 531 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.239 ? metalc ? metalc7 B OG1 THR 26 B THR 25 1_555 H MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.974 ? metalc ? metalc8 G O2B GDP . B GDP 401 1_555 H MG MG . B MG 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? metalc ? metalc9 H MG MG . B MG 402 1_555 J O HOH . B HOH 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc10 H MG MG . B MG 402 1_555 J O HOH . B HOH 512 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? metalc ? metalc11 H MG MG . B MG 402 1_555 J O HOH . B HOH 514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.195 ? metalc ? metalc12 H MG MG . B MG 402 1_555 J O HOH . B HOH 516 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3U6B _atom_sites.fract_transf_matrix[1][1] 0.010283 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009963 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00639 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 MG A 1 401 998 MG MG . F 4 GDP A 1 402 999 GDP GDP . G 4 GDP B 1 401 999 GDP GDP . H 3 MG B 1 402 998 MG MG . I 5 HOH A 1 501 1 HOH HOH . I 5 HOH A 2 502 3 HOH HOH . I 5 HOH A 3 503 5 HOH HOH . I 5 HOH A 4 504 6 HOH HOH . I 5 HOH A 5 505 7 HOH HOH . I 5 HOH A 6 506 8 HOH HOH . I 5 HOH A 7 507 9 HOH HOH . I 5 HOH A 8 508 14 HOH HOH . I 5 HOH A 9 509 18 HOH HOH . I 5 HOH A 10 510 22 HOH HOH . I 5 HOH A 11 511 25 HOH HOH . I 5 HOH A 12 512 26 HOH HOH . I 5 HOH A 13 513 28 HOH HOH . I 5 HOH A 14 514 29 HOH HOH . I 5 HOH A 15 515 32 HOH HOH . I 5 HOH A 16 516 34 HOH HOH . I 5 HOH A 17 517 35 HOH HOH . I 5 HOH A 18 518 36 HOH HOH . I 5 HOH A 19 519 38 HOH HOH . I 5 HOH A 20 520 39 HOH HOH . I 5 HOH A 21 521 42 HOH HOH . I 5 HOH A 22 522 44 HOH HOH . I 5 HOH A 23 523 45 HOH HOH . I 5 HOH A 24 524 48 HOH HOH . I 5 HOH A 25 525 49 HOH HOH . I 5 HOH A 26 526 52 HOH HOH . I 5 HOH A 27 527 53 HOH HOH . I 5 HOH A 28 528 55 HOH HOH . I 5 HOH A 29 529 56 HOH HOH . I 5 HOH A 30 530 57 HOH HOH . I 5 HOH A 31 531 58 HOH HOH . I 5 HOH A 32 532 59 HOH HOH . I 5 HOH A 33 533 60 HOH HOH . I 5 HOH A 34 534 61 HOH HOH . I 5 HOH A 35 535 62 HOH HOH . I 5 HOH A 36 536 63 HOH HOH . I 5 HOH A 37 537 64 HOH HOH . I 5 HOH A 38 538 66 HOH HOH . I 5 HOH A 39 539 67 HOH HOH . I 5 HOH A 40 540 68 HOH HOH . I 5 HOH A 41 541 71 HOH HOH . I 5 HOH A 42 542 72 HOH HOH . I 5 HOH A 43 543 73 HOH HOH . I 5 HOH A 44 544 74 HOH HOH . I 5 HOH A 45 545 75 HOH HOH . I 5 HOH A 46 546 76 HOH HOH . I 5 HOH A 47 547 82 HOH HOH . I 5 HOH A 48 548 83 HOH HOH . I 5 HOH A 49 549 84 HOH HOH . I 5 HOH A 50 550 85 HOH HOH . I 5 HOH A 51 551 86 HOH HOH . I 5 HOH A 52 552 87 HOH HOH . I 5 HOH A 53 553 88 HOH HOH . I 5 HOH A 54 554 102 HOH HOH . I 5 HOH A 55 555 103 HOH HOH . I 5 HOH A 56 556 104 HOH HOH . I 5 HOH A 57 557 105 HOH HOH . I 5 HOH A 58 558 106 HOH HOH . I 5 HOH A 59 559 107 HOH HOH . I 5 HOH A 60 560 108 HOH HOH . I 5 HOH A 61 561 109 HOH HOH . I 5 HOH A 62 562 111 HOH HOH . J 5 HOH B 1 501 2 HOH HOH . J 5 HOH B 2 502 4 HOH HOH . J 5 HOH B 3 503 10 HOH HOH . J 5 HOH B 4 504 11 HOH HOH . J 5 HOH B 5 505 12 HOH HOH . J 5 HOH B 6 506 13 HOH HOH . J 5 HOH B 7 507 15 HOH HOH . J 5 HOH B 8 508 16 HOH HOH . J 5 HOH B 9 509 17 HOH HOH . J 5 HOH B 10 510 19 HOH HOH . J 5 HOH B 11 511 20 HOH HOH . J 5 HOH B 12 512 21 HOH HOH . J 5 HOH B 13 513 23 HOH HOH . J 5 HOH B 14 514 24 HOH HOH . J 5 HOH B 15 515 27 HOH HOH . J 5 HOH B 16 516 30 HOH HOH . J 5 HOH B 17 517 31 HOH HOH . J 5 HOH B 18 518 33 HOH HOH . J 5 HOH B 19 519 37 HOH HOH . J 5 HOH B 20 520 40 HOH HOH . J 5 HOH B 21 521 41 HOH HOH . J 5 HOH B 22 522 43 HOH HOH . J 5 HOH B 23 523 46 HOH HOH . J 5 HOH B 24 524 47 HOH HOH . J 5 HOH B 25 525 50 HOH HOH . J 5 HOH B 26 526 51 HOH HOH . J 5 HOH B 27 527 54 HOH HOH . J 5 HOH B 28 528 65 HOH HOH . J 5 HOH B 29 529 69 HOH HOH . J 5 HOH B 30 530 70 HOH HOH . J 5 HOH B 31 531 77 HOH HOH . J 5 HOH B 32 532 78 HOH HOH . J 5 HOH B 33 533 79 HOH HOH . J 5 HOH B 34 534 80 HOH HOH . J 5 HOH B 35 535 81 HOH HOH . J 5 HOH B 36 536 89 HOH HOH . J 5 HOH B 37 537 90 HOH HOH . J 5 HOH B 38 538 91 HOH HOH . J 5 HOH B 39 539 94 HOH HOH . J 5 HOH B 40 540 95 HOH HOH . J 5 HOH B 41 541 96 HOH HOH . J 5 HOH B 42 542 97 HOH HOH . J 5 HOH B 43 543 98 HOH HOH . J 5 HOH B 44 544 99 HOH HOH . J 5 HOH B 45 545 100 HOH HOH . J 5 HOH B 46 546 101 HOH HOH . J 5 HOH B 47 547 110 HOH HOH . K 5 HOH C 1 101 92 HOH HOH . K 5 HOH C 2 102 93 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x -41.26 _atom_site.Cartn_y -22.901 _atom_site.Cartn_z 36.814 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 25.73 _atom_site.pdbx_formal_charge 2 _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 401 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #