data_3U6F # _model_server_result.job_id ooBgw-ACNa7wdVpuU2TwEQ _model_server_result.datetime_utc '2024-10-19 00:54:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3u6f # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":315}' # _entry.id 3U6F # _exptl.entry_id 3U6F _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 90.121 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,4-BUTANEDIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.97 _cell.angle_gamma 90 _cell.entry_id 3U6F _cell.length_a 64.886 _cell.length_b 56.644 _cell.length_c 68.143 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3U6F _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASP 18 B ASP 18 1_555 G MG MG . C MG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? metalc ? metalc2 I O HOH . B HOH 332 1_555 G MG MG . C MG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.283 ? metalc ? metalc3 I O HOH . B HOH 363 1_555 G MG MG . C MG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc4 I O HOH . B HOH 370 1_555 G MG MG . C MG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? metalc ? metalc5 B OD1 ASP 18 A ASP 18 1_555 H MG MG . D MG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc6 J O HOH . A HOH 331 1_555 H MG MG . D MG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc7 J O HOH . A HOH 359 1_555 H MG MG . D MG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.432 ? metalc ? metalc8 J O HOH . A HOH 381 1_555 H MG MG . D MG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc9 C O3' DC 3 C DC 3 1_555 G MG MG . C MG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.836 ? metalc ? metalc10 C OP1 DG 4 C DG 4 1_555 G MG MG . C MG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc11 D O3' DC 3 D DC 3 1_555 H MG MG . D MG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.654 ? metalc ? metalc12 D OP1 DG 4 D DG 4 1_555 H MG MG . D MG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? # _chem_comp.formula 'C4 H10 O2' _chem_comp.formula_weight 90.121 _chem_comp.id BU1 _chem_comp.mon_nstd_flag . _chem_comp.name 1,4-BUTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 BU1 sing 70 n n C1 O5 BU1 sing 71 n n C1 H11 BU1 sing 72 n n C1 H12 BU1 sing 73 n n C2 C3 BU1 sing 74 n n C2 H21 BU1 sing 75 n n C2 H22 BU1 sing 76 n n C3 C4 BU1 sing 77 n n C3 H31 BU1 sing 78 n n C3 H32 BU1 sing 79 n n C4 O6 BU1 sing 80 n n C4 H41 BU1 sing 81 n n C4 H42 BU1 sing 82 n n O5 HO5 BU1 sing 83 n n O6 HO6 BU1 sing 84 n n # _atom_sites.entry_id 3U6F _atom_sites.fract_transf_matrix[1][1] 0.015412 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004999 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017654 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015428 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 BU1 B 1 315 1 BU1 BU1 . F 3 BU1 A 1 315 1 BU1 BU1 . G 4 MG C 1 5 2 MG MG . H 4 MG D 1 5 1 MG MG . I 5 HOH B 1 316 1 HOH HOH . I 5 HOH B 2 317 2 HOH HOH . I 5 HOH B 3 318 6 HOH HOH . I 5 HOH B 4 319 7 HOH HOH . I 5 HOH B 5 320 8 HOH HOH . I 5 HOH B 6 321 12 HOH HOH . I 5 HOH B 7 322 15 HOH HOH . I 5 HOH B 8 323 16 HOH HOH . I 5 HOH B 9 324 18 HOH HOH . I 5 HOH B 10 325 19 HOH HOH . I 5 HOH B 11 326 21 HOH HOH . I 5 HOH B 12 327 25 HOH HOH . I 5 HOH B 13 328 27 HOH HOH . I 5 HOH B 14 329 28 HOH HOH . I 5 HOH B 15 330 29 HOH HOH . I 5 HOH B 16 331 35 HOH HOH . I 5 HOH B 17 332 41 HOH HOH . I 5 HOH B 18 333 47 HOH HOH . I 5 HOH B 19 334 49 HOH HOH . I 5 HOH B 20 335 51 HOH HOH . I 5 HOH B 21 336 52 HOH HOH . I 5 HOH B 22 337 54 HOH HOH . I 5 HOH B 23 338 55 HOH HOH . I 5 HOH B 24 339 59 HOH HOH . I 5 HOH B 25 340 61 HOH HOH . I 5 HOH B 26 341 62 HOH HOH . I 5 HOH B 27 342 66 HOH HOH . I 5 HOH B 28 343 67 HOH HOH . I 5 HOH B 29 344 68 HOH HOH . I 5 HOH B 30 345 70 HOH HOH . I 5 HOH B 31 346 73 HOH HOH . I 5 HOH B 32 347 76 HOH HOH . I 5 HOH B 33 348 78 HOH HOH . I 5 HOH B 34 349 84 HOH HOH . I 5 HOH B 35 350 86 HOH HOH . I 5 HOH B 36 351 89 HOH HOH . I 5 HOH B 37 352 91 HOH HOH . I 5 HOH B 38 353 95 HOH HOH . I 5 HOH B 39 354 97 HOH HOH . I 5 HOH B 40 355 98 HOH HOH . I 5 HOH B 41 356 99 HOH HOH . I 5 HOH B 42 357 100 HOH HOH . I 5 HOH B 43 358 104 HOH HOH . I 5 HOH B 44 359 107 HOH HOH . I 5 HOH B 45 360 108 HOH HOH . I 5 HOH B 46 361 109 HOH HOH . I 5 HOH B 47 362 110 HOH HOH . I 5 HOH B 48 363 112 HOH HOH . I 5 HOH B 49 364 119 HOH HOH . I 5 HOH B 50 365 120 HOH HOH . I 5 HOH B 51 366 125 HOH HOH . I 5 HOH B 52 367 129 HOH HOH . I 5 HOH B 53 368 130 HOH HOH . I 5 HOH B 54 369 131 HOH HOH . I 5 HOH B 55 370 133 HOH HOH . I 5 HOH B 56 371 134 HOH HOH . I 5 HOH B 57 372 136 HOH HOH . I 5 HOH B 58 373 139 HOH HOH . I 5 HOH B 59 374 140 HOH HOH . I 5 HOH B 60 375 144 HOH HOH . I 5 HOH B 61 376 147 HOH HOH . I 5 HOH B 62 377 148 HOH HOH . I 5 HOH B 63 378 151 HOH HOH . I 5 HOH B 64 379 153 HOH HOH . I 5 HOH B 65 380 155 HOH HOH . I 5 HOH B 66 381 157 HOH HOH . I 5 HOH B 67 382 158 HOH HOH . I 5 HOH B 68 383 160 HOH HOH . I 5 HOH B 69 384 161 HOH HOH . I 5 HOH B 70 385 163 HOH HOH . I 5 HOH B 71 386 164 HOH HOH . I 5 HOH B 72 387 165 HOH HOH . I 5 HOH B 73 388 167 HOH HOH . I 5 HOH B 74 389 171 HOH HOH . I 5 HOH B 75 390 177 HOH HOH . I 5 HOH B 76 391 182 HOH HOH . J 5 HOH A 1 316 4 HOH HOH . J 5 HOH A 2 317 5 HOH HOH . J 5 HOH A 3 318 10 HOH HOH . J 5 HOH A 4 319 11 HOH HOH . J 5 HOH A 5 320 13 HOH HOH . J 5 HOH A 6 321 14 HOH HOH . J 5 HOH A 7 322 17 HOH HOH . J 5 HOH A 8 323 20 HOH HOH . J 5 HOH A 9 324 23 HOH HOH . J 5 HOH A 10 325 24 HOH HOH . J 5 HOH A 11 326 31 HOH HOH . J 5 HOH A 12 327 32 HOH HOH . J 5 HOH A 13 328 33 HOH HOH . J 5 HOH A 14 329 34 HOH HOH . J 5 HOH A 15 330 36 HOH HOH . J 5 HOH A 16 331 37 HOH HOH . J 5 HOH A 17 332 38 HOH HOH . J 5 HOH A 18 333 39 HOH HOH . J 5 HOH A 19 334 43 HOH HOH . J 5 HOH A 20 335 44 HOH HOH . J 5 HOH A 21 336 45 HOH HOH . J 5 HOH A 22 337 46 HOH HOH . J 5 HOH A 23 338 48 HOH HOH . J 5 HOH A 24 339 50 HOH HOH . J 5 HOH A 25 340 53 HOH HOH . J 5 HOH A 26 341 56 HOH HOH . J 5 HOH A 27 342 57 HOH HOH . J 5 HOH A 28 343 58 HOH HOH . J 5 HOH A 29 344 60 HOH HOH . J 5 HOH A 30 345 64 HOH HOH . J 5 HOH A 31 346 65 HOH HOH . J 5 HOH A 32 347 69 HOH HOH . J 5 HOH A 33 348 71 HOH HOH . J 5 HOH A 34 349 74 HOH HOH . J 5 HOH A 35 350 75 HOH HOH . J 5 HOH A 36 351 77 HOH HOH . J 5 HOH A 37 352 79 HOH HOH . J 5 HOH A 38 353 80 HOH HOH . J 5 HOH A 39 354 81 HOH HOH . J 5 HOH A 40 355 83 HOH HOH . J 5 HOH A 41 356 85 HOH HOH . J 5 HOH A 42 357 87 HOH HOH . J 5 HOH A 43 358 90 HOH HOH . J 5 HOH A 44 359 92 HOH HOH . J 5 HOH A 45 360 93 HOH HOH . J 5 HOH A 46 361 94 HOH HOH . J 5 HOH A 47 362 96 HOH HOH . J 5 HOH A 48 363 101 HOH HOH . J 5 HOH A 49 364 102 HOH HOH . J 5 HOH A 50 365 103 HOH HOH . J 5 HOH A 51 366 105 HOH HOH . J 5 HOH A 52 367 106 HOH HOH . J 5 HOH A 53 368 113 HOH HOH . J 5 HOH A 54 369 114 HOH HOH . J 5 HOH A 55 370 117 HOH HOH . J 5 HOH A 56 371 118 HOH HOH . J 5 HOH A 57 372 122 HOH HOH . J 5 HOH A 58 373 123 HOH HOH . J 5 HOH A 59 374 124 HOH HOH . J 5 HOH A 60 375 126 HOH HOH . J 5 HOH A 61 376 127 HOH HOH . J 5 HOH A 62 377 128 HOH HOH . J 5 HOH A 63 378 135 HOH HOH . J 5 HOH A 64 379 137 HOH HOH . J 5 HOH A 65 380 138 HOH HOH . J 5 HOH A 66 381 141 HOH HOH . J 5 HOH A 67 382 143 HOH HOH . J 5 HOH A 68 383 146 HOH HOH . J 5 HOH A 69 384 149 HOH HOH . J 5 HOH A 70 385 150 HOH HOH . J 5 HOH A 71 386 152 HOH HOH . J 5 HOH A 72 387 159 HOH HOH . J 5 HOH A 73 388 169 HOH HOH . J 5 HOH A 74 389 170 HOH HOH . J 5 HOH A 75 390 172 HOH HOH . J 5 HOH A 76 391 173 HOH HOH . J 5 HOH A 77 392 174 HOH HOH . J 5 HOH A 78 393 175 HOH HOH . J 5 HOH A 79 394 176 HOH HOH . J 5 HOH A 80 395 178 HOH HOH . J 5 HOH A 81 396 180 HOH HOH . J 5 HOH A 82 397 181 HOH HOH . J 5 HOH A 83 398 184 HOH HOH . K 5 HOH C 1 6 3 HOH HOH . K 5 HOH C 2 22 22 HOH HOH . K 5 HOH C 3 26 26 HOH HOH . K 5 HOH C 4 30 30 HOH HOH . K 5 HOH C 5 63 63 HOH HOH . K 5 HOH C 6 132 132 HOH HOH . K 5 HOH C 7 154 154 HOH HOH . L 5 HOH D 1 9 9 HOH HOH . L 5 HOH D 2 40 40 HOH HOH . L 5 HOH D 3 72 72 HOH HOH . L 5 HOH D 4 111 111 HOH HOH . L 5 HOH D 5 115 115 HOH HOH . L 5 HOH D 6 142 142 HOH HOH . L 5 HOH D 7 145 145 HOH HOH . L 5 HOH D 8 156 156 HOH HOH . L 5 HOH D 9 166 166 HOH HOH . L 5 HOH D 10 168 168 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 BU1 . . . F 3 3.016 -6.461 21.982 1 51.67 ? C1 BU1 315 A 1 HETATM 2 C C2 BU1 . . . F 3 3.204 -4.945 21.928 1 56.6 ? C2 BU1 315 A 1 HETATM 3 C C3 BU1 . . . F 3 3.246 -4.452 20.483 1 58.28 ? C3 BU1 315 A 1 HETATM 4 C C4 BU1 . . . F 3 4.591 -3.822 20.12 1 65.28 ? C4 BU1 315 A 1 HETATM 5 O O5 BU1 . . . F 3 2.422 -6.866 23.222 1 42.87 ? O5 BU1 315 A 1 HETATM 6 O O6 BU1 . . . F 3 4.45 -2.414 19.873 1 68.02 ? O6 BU1 315 A 1 HETATM 7 H H11 BU1 . . . F 3 3.985 -6.951 21.867 1 61.97 ? H11 BU1 315 A 1 HETATM 8 H H12 BU1 . . . F 3 2.379 -6.778 21.154 1 61.97 ? H12 BU1 315 A 1 HETATM 9 H H21 BU1 . . . F 3 2.382 -4.457 22.456 1 67.88 ? H21 BU1 315 A 1 HETATM 10 H H22 BU1 . . . F 3 4.134 -4.675 22.432 1 67.88 ? H22 BU1 315 A 1 HETATM 11 H H31 BU1 . . . F 3 3.051 -5.291 19.812 1 69.91 ? H31 BU1 315 A 1 HETATM 12 H H32 BU1 . . . F 3 2.453 -3.717 20.332 1 69.91 ? H32 BU1 315 A 1 HETATM 13 H H41 BU1 . . . F 3 5.298 -3.979 20.937 1 78.31 ? H41 BU1 315 A 1 HETATM 14 H H42 BU1 . . . F 3 4.993 -4.309 19.23 1 78.31 ? H42 BU1 315 A 1 HETATM 15 H HO5 BU1 . . . F 3 2.242 -7.816 23.198 1 51.41 ? HO5 BU1 315 A 1 HETATM 16 H HO6 BU1 . . . F 3 5.322 -2.024 19.724 1 81.6 ? HO6 BU1 315 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 16 #