data_3U6K # _model_server_result.job_id 4272ZZcbyhhVvHVfRFONnw _model_server_result.datetime_utc '2024-11-01 11:35:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 3u6k # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":394}' # _entry.id 3U6K # _exptl.entry_id 3U6K _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 3U6K _cell.length_a 80.372 _cell.length_b 82.216 _cell.length_c 129.9 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 3U6K _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E,F,I,K 1 1 B,D,G,H,J,L 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C SER 1 C SER 1 1_555 C N BB9 2 C BB9 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.364 sing covale ? covale2 C C SER 1 C SER 1 1_555 C SG BB9 2 C BB9 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.732 sing covale ? covale3 C CA SER 1 C SER 1 1_555 C C BB9 10 C BB9 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.42 sing covale ? covale4 C CB SER 1 C SER 1 1_555 C CB MH6 11 C MH6 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 sing covale ? covale5 C C BB9 2 C BB9 2 1_555 C N MEN 3 C MEN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.314 sing covale ? covale6 C C MEN 3 C MEN 3 1_555 C SG BB6 4 C BB6 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.751 sing covale ? covale7 C C MEN 3 C MEN 3 1_555 C N BB6 4 C BB6 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 sing covale ? covale8 C C BB6 4 C BB6 4 1_555 C N VAL 5 C VAL 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 sing covale ? covale9 C C VAL 5 C VAL 5 1_555 C SG BB7 6 C BB7 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.749 sing covale ? covale10 C C VAL 5 C VAL 5 1_555 C N BB7 6 C BB7 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 sing covale ? covale11 C C BB7 6 C BB7 6 1_555 C N GLY 7 C GLY 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.358 sing covale ? covale12 C C GLY 7 C GLY 7 1_555 C N BB8 8 C BB8 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 sing covale ? covale13 C C BB8 8 C BB8 8 1_555 C N BB9 9 C BB9 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.309 sing covale ? covale14 C C BB8 8 C BB8 8 1_555 C SG BB9 9 C BB9 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.775 sing covale ? covale15 C C BB9 9 C BB9 9 1_555 C N BB9 10 C BB9 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 sing covale ? covale16 C C BB9 9 C BB9 9 1_555 C SG BB9 10 C BB9 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 sing covale ? covale17 C C BB9 10 C BB9 10 1_555 C N MH6 11 C MH6 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 sing covale ? covale18 C C MH6 11 C MH6 11 1_555 C N 9BB 12 C 9BB 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 sing covale ? covale19 C C MH6 11 C MH6 11 1_555 C SG 9BB 12 C 9BB 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.775 sing covale ? covale20 D C SER 1 D SER 1 1_555 D N BB9 2 D BB9 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.353 sing covale ? covale21 D C SER 1 D SER 1 1_555 D SG BB9 2 D BB9 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.747 sing covale ? covale22 D CA SER 1 D SER 1 1_555 D C BB9 10 D BB9 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.405 sing covale ? covale23 D CB SER 1 D SER 1 1_555 D CB MH6 11 D MH6 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.409 sing covale ? covale24 D C BB9 2 D BB9 2 1_555 D N MEN 3 D MEN 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 sing covale ? covale25 D C MEN 3 D MEN 3 1_555 D SG BB6 4 D BB6 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.755 sing covale ? covale26 D C MEN 3 D MEN 3 1_555 D N BB6 4 D BB6 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 sing covale ? covale27 D C BB6 4 D BB6 4 1_555 D N VAL 5 D VAL 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 sing covale ? covale28 D C VAL 5 D VAL 5 1_555 D SG BB7 6 D BB7 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.755 sing covale ? covale29 D C VAL 5 D VAL 5 1_555 D N BB7 6 D BB7 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 sing covale ? covale30 D C BB7 6 D BB7 6 1_555 D N GLY 7 D GLY 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.358 sing covale ? covale31 D C GLY 7 D GLY 7 1_555 D N BB8 8 D BB8 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 sing covale ? covale32 D C BB8 8 D BB8 8 1_555 D N BB9 9 D BB9 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 sing covale ? covale33 D C BB8 8 D BB8 8 1_555 D SG BB9 9 D BB9 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.79 sing covale ? covale34 D C BB9 9 D BB9 9 1_555 D N BB9 10 D BB9 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 sing covale ? covale35 D C BB9 9 D BB9 9 1_555 D SG BB9 10 D BB9 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.762 sing covale ? covale36 D C BB9 10 D BB9 10 1_555 D N MH6 11 D MH6 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 sing covale ? covale37 D C MH6 11 D MH6 11 1_555 D N 9BB 12 D 9BB 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.351 sing covale ? covale38 D C MH6 11 D MH6 11 1_555 D SG 9BB 12 D 9BB 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.765 sing metalc ? metalc1 A OG1 THR 26 A THR 25 1_555 F MG MG . A MG 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc2 F MG MG . A MG 394 1_555 I O HOH . A HOH 439 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc3 F MG MG . A MG 394 1_555 I O HOH . A HOH 441 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.702 ? metalc ? metalc4 F MG MG . A MG 394 1_555 I O HOH . A HOH 442 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.578 ? metalc ? metalc5 F MG MG . A MG 394 1_555 I O HOH . A HOH 444 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc6 F MG MG . A MG 394 1_555 E O3B GDP . A GDP 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.533 ? metalc ? metalc7 B OG1 THR 26 B THR 25 1_555 H MG MG . B MG 394 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.429 ? metalc ? metalc8 H MG MG . B MG 394 1_555 J O HOH . B HOH 395 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.215 ? metalc ? metalc9 H MG MG . B MG 394 1_555 J O HOH . B HOH 396 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc10 H MG MG . B MG 394 1_555 J O HOH . B HOH 397 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc11 H MG MG . B MG 394 1_555 J O HOH . B HOH 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? metalc ? metalc12 H MG MG . B MG 394 1_555 G O3B GDP . B GDP 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 3U6K _atom_sites.fract_transf_matrix[1][1] 0.012442 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012163 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007698 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 GDP A 1 500 500 GDP GDP . F 4 MG A 1 394 1 MG MG . G 3 GDP B 1 500 500 GDP GDP . H 4 MG B 1 394 1 MG MG . I 5 HOH A 1 395 11 HOH HOH . I 5 HOH A 2 396 12 HOH HOH . I 5 HOH A 3 397 13 HOH HOH . I 5 HOH A 4 398 14 HOH HOH . I 5 HOH A 5 399 15 HOH HOH . I 5 HOH A 6 400 16 HOH HOH . I 5 HOH A 7 401 17 HOH HOH . I 5 HOH A 8 402 19 HOH HOH . I 5 HOH A 9 403 20 HOH HOH . I 5 HOH A 10 404 21 HOH HOH . I 5 HOH A 11 405 22 HOH HOH . I 5 HOH A 12 406 23 HOH HOH . I 5 HOH A 13 407 24 HOH HOH . I 5 HOH A 14 408 25 HOH HOH . I 5 HOH A 15 409 26 HOH HOH . I 5 HOH A 16 410 27 HOH HOH . I 5 HOH A 17 411 28 HOH HOH . I 5 HOH A 18 412 29 HOH HOH . I 5 HOH A 19 413 30 HOH HOH . I 5 HOH A 20 414 31 HOH HOH . I 5 HOH A 21 415 32 HOH HOH . I 5 HOH A 22 416 33 HOH HOH . I 5 HOH A 23 417 34 HOH HOH . I 5 HOH A 24 418 35 HOH HOH . I 5 HOH A 25 419 37 HOH HOH . I 5 HOH A 26 420 38 HOH HOH . I 5 HOH A 27 421 39 HOH HOH . I 5 HOH A 28 422 40 HOH HOH . I 5 HOH A 29 423 41 HOH HOH . I 5 HOH A 30 424 42 HOH HOH . I 5 HOH A 31 425 43 HOH HOH . I 5 HOH A 32 426 44 HOH HOH . I 5 HOH A 33 427 45 HOH HOH . I 5 HOH A 34 428 46 HOH HOH . I 5 HOH A 35 429 47 HOH HOH . I 5 HOH A 36 430 48 HOH HOH . I 5 HOH A 37 431 49 HOH HOH . I 5 HOH A 38 432 50 HOH HOH . I 5 HOH A 39 433 51 HOH HOH . I 5 HOH A 40 434 52 HOH HOH . I 5 HOH A 41 435 53 HOH HOH . I 5 HOH A 42 436 54 HOH HOH . I 5 HOH A 43 437 55 HOH HOH . I 5 HOH A 44 438 56 HOH HOH . I 5 HOH A 45 439 57 HOH HOH . I 5 HOH A 46 440 84 HOH HOH . I 5 HOH A 47 441 105 HOH HOH . I 5 HOH A 48 442 106 HOH HOH . I 5 HOH A 49 443 107 HOH HOH . I 5 HOH A 50 444 108 HOH HOH . I 5 HOH A 51 445 112 HOH HOH . I 5 HOH A 52 446 114 HOH HOH . I 5 HOH A 53 447 115 HOH HOH . I 5 HOH A 54 448 117 HOH HOH . I 5 HOH A 55 449 118 HOH HOH . I 5 HOH A 56 450 122 HOH HOH . I 5 HOH A 57 451 124 HOH HOH . I 5 HOH A 58 452 126 HOH HOH . I 5 HOH A 59 453 127 HOH HOH . I 5 HOH A 60 454 128 HOH HOH . I 5 HOH A 61 455 129 HOH HOH . I 5 HOH A 62 456 132 HOH HOH . I 5 HOH A 63 457 133 HOH HOH . I 5 HOH A 64 458 134 HOH HOH . I 5 HOH A 65 459 137 HOH HOH . I 5 HOH A 66 460 139 HOH HOH . I 5 HOH A 67 461 140 HOH HOH . I 5 HOH A 68 462 141 HOH HOH . I 5 HOH A 69 463 142 HOH HOH . J 5 HOH B 1 395 1 HOH HOH . J 5 HOH B 2 396 2 HOH HOH . J 5 HOH B 3 397 3 HOH HOH . J 5 HOH B 4 398 4 HOH HOH . J 5 HOH B 5 399 6 HOH HOH . J 5 HOH B 6 400 8 HOH HOH . J 5 HOH B 7 401 9 HOH HOH . J 5 HOH B 8 402 10 HOH HOH . J 5 HOH B 9 403 58 HOH HOH . J 5 HOH B 10 404 59 HOH HOH . J 5 HOH B 11 405 60 HOH HOH . J 5 HOH B 12 406 61 HOH HOH . J 5 HOH B 13 407 62 HOH HOH . J 5 HOH B 14 408 63 HOH HOH . J 5 HOH B 15 409 64 HOH HOH . J 5 HOH B 16 410 65 HOH HOH . J 5 HOH B 17 411 66 HOH HOH . J 5 HOH B 18 412 67 HOH HOH . J 5 HOH B 19 413 68 HOH HOH . J 5 HOH B 20 414 69 HOH HOH . J 5 HOH B 21 415 70 HOH HOH . J 5 HOH B 22 416 71 HOH HOH . J 5 HOH B 23 417 72 HOH HOH . J 5 HOH B 24 418 73 HOH HOH . J 5 HOH B 25 419 74 HOH HOH . J 5 HOH B 26 420 75 HOH HOH . J 5 HOH B 27 421 76 HOH HOH . J 5 HOH B 28 422 77 HOH HOH . J 5 HOH B 29 423 78 HOH HOH . J 5 HOH B 30 424 79 HOH HOH . J 5 HOH B 31 425 80 HOH HOH . J 5 HOH B 32 426 81 HOH HOH . J 5 HOH B 33 427 82 HOH HOH . J 5 HOH B 34 428 83 HOH HOH . J 5 HOH B 35 429 85 HOH HOH . J 5 HOH B 36 430 86 HOH HOH . J 5 HOH B 37 431 87 HOH HOH . J 5 HOH B 38 432 88 HOH HOH . J 5 HOH B 39 433 89 HOH HOH . J 5 HOH B 40 434 90 HOH HOH . J 5 HOH B 41 435 91 HOH HOH . J 5 HOH B 42 436 92 HOH HOH . J 5 HOH B 43 437 93 HOH HOH . J 5 HOH B 44 438 94 HOH HOH . J 5 HOH B 45 439 95 HOH HOH . J 5 HOH B 46 440 96 HOH HOH . J 5 HOH B 47 441 97 HOH HOH . J 5 HOH B 48 442 98 HOH HOH . J 5 HOH B 49 443 99 HOH HOH . J 5 HOH B 50 444 100 HOH HOH . J 5 HOH B 51 445 101 HOH HOH . J 5 HOH B 52 446 102 HOH HOH . J 5 HOH B 53 447 103 HOH HOH . J 5 HOH B 54 448 104 HOH HOH . J 5 HOH B 55 449 109 HOH HOH . J 5 HOH B 56 450 110 HOH HOH . J 5 HOH B 57 451 111 HOH HOH . J 5 HOH B 58 452 113 HOH HOH . J 5 HOH B 59 453 116 HOH HOH . J 5 HOH B 60 454 119 HOH HOH . J 5 HOH B 61 455 120 HOH HOH . J 5 HOH B 62 456 121 HOH HOH . J 5 HOH B 63 457 123 HOH HOH . J 5 HOH B 64 458 125 HOH HOH . J 5 HOH B 65 459 130 HOH HOH . J 5 HOH B 66 460 131 HOH HOH . J 5 HOH B 67 461 135 HOH HOH . J 5 HOH B 68 462 136 HOH HOH . J 5 HOH B 69 463 138 HOH HOH . J 5 HOH B 70 464 144 HOH HOH . J 5 HOH B 71 465 145 HOH HOH . J 5 HOH B 72 466 146 HOH HOH . K 5 HOH C 1 18 18 HOH HOH . L 5 HOH D 1 13 5 HOH HOH . L 5 HOH D 2 14 7 HOH HOH . L 5 HOH D 3 143 143 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 4 _atom_site.Cartn_x 19.677 _atom_site.Cartn_y -13.216 _atom_site.Cartn_z 3.527 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 41.92 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 394 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #